Showing: mpileupreset
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Samtools mpileup: AF1 and DP4 not provided
samtools mpileup af1 info written 9 weeks ago by filippo.martignano0 • updated 9 weeks ago by Kevin Blighe11k
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Unsynchronized simultaneous reads on a single .bam file
bam samtools mpileup written 3 months ago by kennethlim2060 • updated 3 months ago by Brian Bushnell15k
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Samtools mpileup output: missing fields?
rnaseq samtools pileup mpileup written 4 months ago by cjaln0 • updated 4 months ago by John Marshall1.2k
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Samtools mpileup degenerative characters
samtools degenrative characters mpileup written 6 months ago by divya10 • updated 4 months ago by Biostar ♦♦ 20
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How to filter a multisample VCF based on individual sample depth?
vcf samtools mpileup gbs written 6 months ago by jtwalker20 • updated 6 months ago by Pierre Lindenbaum103k
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samtools mpileup output documentation
samtools mpileup output written 8 months ago by bec10 • updated 8 months ago by James Bonfield110
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mpileup for PacBio reads
quiver calling pacbio mpileup variants written 9 months ago by Biomonika (Noolean)3.0k • updated 5 weeks ago by tjduncan100
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Calling SNPs with low coverage
vcf low-coverage samtools mpileup snp written 9 months ago by devin.porter920 • updated 10 weeks ago by pierre.peterlongo670
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emtpy bcf file
alignment samtools mpileup written 11 months ago by Illinu90
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Bam-readcounts min-base-quality not giving expected output
bam-readcount mpileup written 11 months ago by sheenams50 • updated 11 months ago by Chris Miller19k
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Why does mpileup tell me the starting and ending base of a read?
samtools mpileup written 12 months ago by Peavil10 • updated 16 hours ago by Vasisht150
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What is mean that mpileup read depth (read count) 0?
samtools mpileup written 12 months ago by Peavil10 • updated 12 months ago by Devon Ryan75k
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How best to parse samtools mpileup results?
vcf samtools vcftools mpileup written 12 months ago by yarmda0 • updated 12 months ago by Pierre Lindenbaum103k
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Difference between samtools DEPTH and MPILEUP
reads samtools chip-seq mpileup depth written 15 months ago by ariel.balter120 • updated 15 months ago by Devon Ryan75k
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