Showing: mpileupreset
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19
votes
8
answers
17k
views
16 follow
8
answers
Calculate The Frequency Of Nucleotides At Each Position In An Mpileup File
mpileup written 4.1 years ago by komal.rathi3.1k • updated 3.1 years ago by inesdesantiago140
9
votes
3
answers
9.5k
views
12 follow
3
answers
11
votes
2
answers
3.5k
views
11 follow
2
answers
Mapping Quality 0 Reads And Variant Calling
gatk bwa mpileup written 4.5 years ago by huskerjeff492160 • updated 4.5 years ago by Jorge Amigo10k
4
votes
6
answers
11k
views
11 follow
6
answers
Variant Calling With Bcftools Call
variant-calling bcftools samtools mpileup written 4.1 years ago by tayebwajb90 • updated 2.2 years ago by vladimir.kovacevic50
12
votes
5
answers
9.5k
views
10 follow
5
answers
Extract Base Based On Position From Bam File
samtools mpileup written 5.8 years ago by Empyrean160 • updated 18 months ago by stephanieP0
11
votes
2
answers
10k
views
10 follow
2
answers
9
votes
2
answers
5.2k
views
10 follow
2
answers
Changing Quality Scores Within Bam Files
fastq bam samtools mpileup written 5.7 years ago by matted6.7k • updated 5.7 years ago by Lee Katz2.9k
16
votes
3
answers
17k
views
8 follow
3
answers
Snp Quality In Vcf File
vcf dbsnp mpileup snp written 6.8 years ago by Tiffani120 • updated 6.8 years ago by Chris Miller19k
6
votes
1
answer
5.6k
views
8 follow
1
answer
How To Make Samtools Mpileup Produce Genotype Information At Every Base?
samtools bcftools mpileup written 4.4 years ago by komal.rathi3.1k • updated 4.4 years ago by Istvan Albert ♦♦ 76k
1
vote
2
answers
722
views
8 follow
2
answers
Calling SNPs with low coverage
vcf low-coverage samtools mpileup snp written 12 months ago by devin.porter920 • updated 5 months ago by pierre.peterlongo720
19
votes
1
answer
7.2k
views
7 follow
1
answer
4
votes
1
answer
1.6k
views
7 follow
1
answer
Wgs: Variant Calling Per Chr Or Region?
mpileup written 4.9 years ago by mathiasf5220 • updated 4.9 years ago by Ashutosh Pandey11k
5
votes
0
answers
960
views
7 follow
0
answers
4
votes
2
answers
10k
views
6 follow
2
answers
What Is Mpileup Data And Where Is The Snp Data?
samtools snp mpileup written 6.4 years ago by Sortinghat10 • updated 2.4 years ago by Biostar ♦♦ 20
6
votes
2
answers
9.7k
views
6 follow
2
answers
5
votes
3
answers
3.4k
views
6 follow
3
answers
Snp Calling Of Tcga Data Using Samtools
samtools tcga snp mpileup transcriptome exome written 4.5 years ago by pm201350 • updated 4.4 years ago by tayebwajb90
3
votes
2
answers
2.3k
views
6 follow
2
answers
samtools mpileup output documentation
samtools mpileup output written 11 months ago by bec10 • updated 11 months ago by James Bonfield120
7
votes
2
answers
9.8k
views
5 follow
2
answers
Samtools Mpileup Output
samtools sam mpileup written 6.9 years ago by Sam30 • updated 6.9 years ago by Nina330
5
votes
2
answers
3.9k
views
5 follow
2
answers
Sam Tools Pileup Format
format samtools mpileup written 6.1 years ago by Vittorio Fortino20 • updated 15 months ago by Biostar ♦♦ 20
3
votes
1
answer
7.1k
views
5 follow
1
answer
Understanding Vcf Output From Mpileup
snps mpileup written 4.6 years ago by ThePresident60 • updated 3.5 years ago by Biostar ♦♦ 20
2
votes
1
answer
3.6k
views
5 follow
1
answer
Mpileup File From Samtools
varscan mpileup written 4.2 years ago by tejaswikoganti60 • updated 4.2 years ago by Pierre Lindenbaum106k
15
votes
3
answers
5.3k
views
5 follow
3
answers
14
votes
2
answers
12k
views
2
answers
What Is The Difference Between Samtools Mpileup And Pileup
indel pileup samtools mpileup snp written 7.1 years ago by Ian5.1k • updated 7.1 years ago by lh330k
11
votes
2
answers
3.2k
views
2
answers
Mpileup Variant Call
mpileup written 6.8 years ago by Tiffani120 • updated 6.8 years ago by lh330k
4
votes
3
answers
6.0k
views
3
answers
How To Filter The Snps/Indel Results From Mpileup?
mpileup written 6.7 years ago by Haiping100 • updated 2.4 years ago by Biostar ♦♦ 20
24
votes
3
answers
3.4k
views
3
answers
Can I Convert Fasta Lowercase Bases To 'N'?
read samtools mpileup conversion written 6.5 years ago by User 808720 • updated 6.1 years ago by Frédéric Mahé2.7k
1
vote
3
answers
2.1k
views
3
answers
Samtools Mpileup Directional Coverage
samtools coverage mpileup written 6.2 years ago by User 187410 • updated 6.2 years ago by Pierre Lindenbaum106k
5
votes
3
answers
2.1k
views
3
answers
Some Help Understanding With Mpileup Output
samtools mpileup written 5.7 years ago by Lee Katz2.9k • updated 3.8 years ago by swbarnes23.4k
5
votes
1
answer
4.3k
views
1
answer
Mpileup Output And Quality Scores
mpileup written 5.6 years ago by NextGenSeek290
1
vote
3
answers
1.8k
views
3
answers
Mpileup -D And -S
vcf mpileup written 5.5 years ago by GPR300 • updated 5.5 years ago by swbarnes23.4k
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