Showing: mpileupreset
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23
votes
8
answers
20k
views
16 follow
8
answers
Calculate The Frequency Of Nucleotides At Each Position In An Mpileup File
mpileup written 5.3 years ago by komal.rathi3.4k • updated 4.4 years ago by inesdesantiago160
12
votes
2
answers
11k
views
12 follow
2
answers
13
votes
2
answers
12k
views
11 follow
2
answers
12
votes
2
answers
4.5k
views
11 follow
2
answers
Mapping Quality 0 Reads And Variant Calling
gatk bwa mpileup written 5.8 years ago by huskerjeff492160 • updated 5.7 years ago by Jorge Amigo11k
4
votes
6
answers
14k
views
11 follow
6
answers
Variant Calling With Bcftools Call
variant-calling bcftools samtools mpileup written 5.3 years ago by tayebwajb90 • updated 3.4 years ago by vladimir.kovacevic60
12
votes
5
answers
11k
views
10 follow
5
answers
Extract Base Based On Position From Bam File
samtools mpileup written 7.1 years ago by Empyrean160 • updated 2.8 years ago by stephanieP0
9
votes
2
answers
6.0k
views
10 follow
2
answers
Changing Quality Scores Within Bam Files
fastq bam samtools mpileup written 6.9 years ago by matted7.0k • updated 6.9 years ago by Lee Katz2.9k
27
votes
3
answers
22k
views
8 follow
3
answers
Snp Quality In Vcf File
vcf dbsnp mpileup snp written 8.0 years ago by Tiffani150 • updated 8.0 years ago by Chris Miller21k
6
votes
1
answer
6.8k
views
8 follow
1
answer
How To Make Samtools Mpileup Produce Genotype Information At Every Base?
samtools bcftools mpileup written 5.6 years ago by komal.rathi3.4k • updated 5.6 years ago by Istvan Albert ♦♦ 80k
1
vote
2
answers
1.5k
views
8 follow
2
answers
Calling SNPs with low coverage
vcf low-coverage samtools mpileup snp written 2.2 years ago by devin.porter920 • updated 20 months ago by pierre.peterlongo840
6
votes
2
answers
6.5k
views
8 follow
2
answers
samtools mpileup output documentation
samtools mpileup output written 2.1 years ago by bec30 • updated 2.1 years ago by James Bonfield130
19
votes
1
answer
8.0k
views
7 follow
1
answer
4
votes
1
answer
2.1k
views
7 follow
1
answer
Wgs: Variant Calling Per Chr Or Region?
mpileup written 6.1 years ago by mathiasf5220 • updated 6.1 years ago by Ashutosh Pandey11k
6
votes
1
answer
2.3k
views
7 follow
1
answer
2
votes
1
answer
858
views
7 follow
1
answer
Samtools mpileup degenerative characters
samtools degenrative characters mpileup written 2.0 years ago by bruseq40 • updated 12 months ago by swbarnes26.0k
4
votes
2
answers
12k
views
6 follow
2
answers
What Is Mpileup Data And Where Is The Snp Data?
samtools snp mpileup written 7.6 years ago by Sortinghat10 • updated 3.7 years ago by Biostar ♦♦ 20
6
votes
2
answers
10k
views
6 follow
2
answers
5
votes
3
answers
3.9k
views
6 follow
3
answers
Snp Calling Of Tcga Data Using Samtools
samtools tcga snp mpileup transcriptome exome written 5.7 years ago by pm201350 • updated 5.6 years ago by tayebwajb90
8
votes
2
answers
11k
views
5 follow
2
answers
Samtools Mpileup Output
samtools sam mpileup written 8.1 years ago by Sam40 • updated 8.1 years ago by Nina340
5
votes
2
answers
4.7k
views
5 follow
2
answers
Sam Tools Pileup Format
format samtools mpileup written 7.3 years ago by Vittorio Fortino20 • updated 2.5 years ago by Biostar ♦♦ 20
3
votes
1
answer
8.3k
views
5 follow
1
answer
Understanding Vcf Output From Mpileup
snps mpileup written 5.8 years ago by ThePresident60 • updated 4.7 years ago by Biostar ♦♦ 20
2
votes
1
answer
4.6k
views
5 follow
1
answer
Mpileup File From Samtools
varscan mpileup written 5.4 years ago by tejaswikoganti60 • updated 5.4 years ago by Pierre Lindenbaum121k
16
votes
3
answers
6.4k
views
5 follow
3
answers
1
vote
1
answer
334
views
5 follow
1
answer
Can you get mpileup to report positions with coverage of 0?
samtools mpileup written 12 months ago by blur110 • updated 12 months ago by Devon Ryan91k
4
votes
0
answers
782
views
5 follow
0
answers
15
votes
2
answers
14k
views
2
answers
What Is The Difference Between Samtools Mpileup And Pileup
indel pileup samtools mpileup snp written 8.4 years ago by Ian5.5k • updated 8.4 years ago by lh331k
11
votes
2
answers
3.5k
views
2
answers
Mpileup Variant Call
mpileup written 8.0 years ago by Tiffani150 • updated 8.0 years ago by lh331k
4
votes
3
answers
6.8k
views
3
answers
How To Filter The Snps/Indel Results From Mpileup?
mpileup written 8.0 years ago by Haiping110 • updated 3.7 years ago by Biostar ♦♦ 20
24
votes
3
answers
4.1k
views
3
answers
Can I Convert Fasta Lowercase Bases To 'N'?
read samtools mpileup conversion written 7.7 years ago by User 808720 • updated 7.3 years ago by Frédéric Mahé2.9k
1
vote
3
answers
2.4k
views
3
answers
Samtools Mpileup Directional Coverage
samtools coverage mpileup written 7.4 years ago by User 187410 • updated 7.4 years ago by Pierre Lindenbaum121k
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