Showing: mpileupreset
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19
votes
8
answers
13k
views
16 follow
8
answers
Calculate The Frequency Of Nucleotides At Each Position In An Mpileup File
mpileup written 3.3 years ago by komal.rathi2.9k • updated 2.3 years ago by inesdesantiago130
4
votes
6
answers
9.2k
views
11 follow
6
answers
Variant Calling With Bcftools Call
variant-calling bcftools samtools mpileup written 3.2 years ago by tayebwajb80 • updated 16 months ago by vladimir.kovacevic40
9
votes
2
answers
4.4k
views
10 follow
2
answers
Changing Quality Scores Within Bam Files
fastq bam samtools mpileup written 4.9 years ago by matted6.4k • updated 4.9 years ago by Lee Katz2.8k
6
votes
3
answers
8.2k
views
9 follow
3
answers
11
votes
5
answers
8.2k
views
9 follow
5
answers
Extract Base Based On Position From Bam File
samtools mpileup written 5.0 years ago by Empyrean150 • updated 8 months ago by stephanieP0
6
votes
1
answer
4.7k
views
8 follow
1
answer
How To Make Samtools Mpileup Produce Genotype Information At Every Base?
samtools bcftools mpileup written 3.6 years ago by komal.rathi2.9k • updated 3.6 years ago by Istvan Albert ♦♦ 71k
14
votes
3
answers
14k
views
7 follow
3
answers
Snp Quality In Vcf File
vcf dbsnp mpileup snp written 6.0 years ago by Tiffani120 • updated 6.0 years ago by Chris Miller18k
19
votes
1
answer
6.5k
views
7 follow
1
answer
4
votes
1
answer
1.3k
views
7 follow
1
answer
Wgs: Variant Calling Per Chr Or Region?
mpileup written 4.0 years ago by mathiasf5220 • updated 4.0 years ago by Ashutosh Pandey11k
4
votes
2
answers
9.3k
views
6 follow
2
answers
What Is Mpileup Data And Where Is The Snp Data?
samtools snp mpileup written 5.5 years ago by Sortinghat10 • updated 19 months ago by Biostar ♦♦ 20
7
votes
2
answers
8.8k
views
6 follow
2
answers
6
votes
2
answers
8.5k
views
6 follow
2
answers
5
votes
2
answers
2.8k
views
6 follow
2
answers
Mapping Quality 0 Reads And Variant Calling
gatk bwa mpileup written 3.7 years ago by huskerjeff492100 • updated 3.7 years ago by Jorge Amigo9.7k
5
votes
3
answers
3.0k
views
6 follow
3
answers
Snp Calling Of Tcga Data Using Samtools
samtools tcga snp mpileup transcriptome exome written 3.6 years ago by pm201350 • updated 3.6 years ago by tayebwajb80
6
votes
2
answers
8.7k
views
5 follow
2
answers
Samtools Mpileup Output
samtools sam mpileup written 6.1 years ago by Sam30 • updated 6.1 years ago by Nina310
5
votes
2
answers
3.3k
views
5 follow
2
answers
Sam Tools Pileup Format
format samtools mpileup written 5.2 years ago by Vittorio Fortino20 • updated 5 months ago by Biostar ♦♦ 20
2
votes
1
answer
2.9k
views
5 follow
1
answer
Mpileup File From Samtools
varscan mpileup written 3.3 years ago by tejaswikoganti60 • updated 3.3 years ago by Pierre Lindenbaum95k
13
votes
3
answers
4.2k
views
5 follow
3
answers
5
votes
0
answers
294
views
5 follow
0
answers
14
votes
2
answers
11k
views
2
answers
What Is The Difference Between Samtools Mpileup And Pileup
indel pileup samtools mpileup snp written 6.3 years ago by Ian4.9k • updated 6.3 years ago by lh330k
11
votes
2
answers
2.8k
views
2
answers
Mpileup Variant Call
mpileup written 6.0 years ago by Tiffani120 • updated 6.0 years ago by lh330k
4
votes
3
answers
5.4k
views
3
answers
How To Filter The Snps/Indel Results From Mpileup?
mpileup written 5.9 years ago by Haiping100 • updated 19 months ago by Biostar ♦♦ 20
22
votes
3
answers
2.9k
views
3
answers
Can I Convert Fasta Lowercase Bases To 'N'?
read samtools mpileup conversion written 5.7 years ago by User 808720 • updated 5.2 years ago by Frédéric Mahé2.5k
1
vote
3
answers
1.9k
views
3
answers
Samtools Mpileup Directional Coverage
samtools coverage mpileup written 5.3 years ago by User 187410 • updated 5.3 years ago by Pierre Lindenbaum95k
5
votes
3
answers
1.8k
views
3
answers
Some Help Understanding With Mpileup Output
samtools mpileup written 4.9 years ago by Lee Katz2.8k • updated 3.0 years ago by swbarnes22.7k
5
votes
1
answer
3.7k
views
1
answer
Mpileup Output And Quality Scores
mpileup written 4.8 years ago by NextGenSeek290
0
votes
3
answers
1.5k
views
3
answers
Mpileup -D And -S
vcf mpileup written 4.6 years ago by GPR280 • updated 4.6 years ago by swbarnes22.7k
5
votes
1
answer
2.1k
views
1
answer
3
votes
0
answers
1.8k
views
0
answers
1
vote
2
answers
1.9k
views
2
answers
Input Error Using Varscan2.3
error mpileup written 4.2 years ago by Jordan1.0k • updated 3.8 years ago by dankoboldt140
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