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25
votes
8
answers
22k
views
16 follow
8
answers
Calculate The Frequency Of Nucleotides At Each Position In An Mpileup File
mpileup written 6.2 years ago by komal.rathi3.6k • updated 5.2 years ago by inesdesantiago170
12
votes
2
answers
12k
views
12 follow
2
answers
How To Create A Venn Diagram Of Sample1.Vcf, Sample2.Vcf And Sample1&2(Union).Vcf Files
vcftools mpileup written 8.3 years ago by Deniz50 • updated 18 months ago by zx87549.2k
13
votes
5
answers
13k
views
11 follow
5
answers
Extract Base Based On Position From Bam File
samtools mpileup written 7.9 years ago by Empyrean160 • updated 3.6 years ago by stephanieP10
13
votes
2
answers
12k
views
11 follow
2
answers
12
votes
2
answers
5.1k
views
11 follow
2
answers
Mapping Quality 0 Reads And Variant Calling
gatk bwa mpileup written 6.6 years ago by huskerjeff492160 • updated 6.6 years ago by Jorge Amigo11k
4
votes
6
answers
15k
views
11 follow
6
answers
Variant Calling With Bcftools Call
variant-calling bcftools samtools mpileup written 6.2 years ago by tayebwajb90 • updated 4.3 years ago by vladimir.kovacevic60
9
votes
2
answers
6.5k
views
10 follow
2
answers
Changing Quality Scores Within Bam Files
fastq bam samtools mpileup written 7.8 years ago by matted7.2k • updated 7.8 years ago by Lee Katz3.0k
3
votes
2
answers
1.9k
views
9 follow
2
answers
Calling SNPs with low coverage
vcf low-coverage samtools mpileup snp written 3.1 years ago by devin.porter920 • updated 2.5 years ago by pierre.peterlongo860
28
votes
3
answers
24k
views
8 follow
3
answers
Snp Quality In Vcf File
vcf dbsnp mpileup snp written 8.9 years ago by Tiffani150 • updated 8.9 years ago by Chris Miller21k
6
votes
1
answer
7.4k
views
8 follow
1
answer
How To Make Samtools Mpileup Produce Genotype Information At Every Base?
samtools bcftools mpileup written 6.5 years ago by komal.rathi3.6k • updated 6.5 years ago by Istvan Albert ♦♦ 84k
7
votes
2
answers
8.6k
views
8 follow
2
answers
samtools mpileup output documentation
samtools mpileup output written 3.0 years ago by bec40 • updated 3.0 years ago by James Bonfield130
19
votes
1
answer
8.3k
views
7 follow
1
answer
4
votes
1
answer
2.3k
views
7 follow
1
answer
Wgs: Variant Calling Per Chr Or Region?
mpileup written 7.0 years ago by mathiasf5220 • updated 7.0 years ago by Ashutosh Pandey12k
6
votes
1
answer
2.9k
views
7 follow
1
answer
2
votes
1
answer
1.1k
views
7 follow
1
answer
Samtools mpileup degenerative characters
samtools degenrative characters mpileup written 2.9 years ago by bruseq40 • updated 22 months ago by swbarnes27.7k
4
votes
2
answers
13k
views
6 follow
2
answers
What Is Mpileup Data And Where Is The Snp Data?
samtools snp mpileup written 8.5 years ago by Sortinghat10 • updated 4.5 years ago by Biostar ♦♦ 20
6
votes
2
answers
11k
views
6 follow
2
answers
5
votes
3
answers
4.1k
views
6 follow
3
answers
Snp Calling Of Tcga Data Using Samtools
samtools tcga snp mpileup transcriptome exome written 6.6 years ago by pm201350 • updated 6.5 years ago by tayebwajb90
5
votes
0
answers
1.7k
views
6 follow
0
answers
9
votes
2
answers
12k
views
5 follow
2
answers
Samtools Mpileup Output
samtools sam mpileup written 9.0 years ago by Sam40 • updated 9.0 years ago by Nina370
5
votes
2
answers
5.1k
views
5 follow
2
answers
Sam Tools Pileup Format
format samtools mpileup written 8.2 years ago by Vittorio Fortino20 • updated 3.4 years ago by Biostar ♦♦ 20
3
votes
1
answer
8.8k
views
5 follow
1
answer
Understanding Vcf Output From Mpileup
snps mpileup written 6.6 years ago by ThePresident60 • updated 5.6 years ago by Biostar ♦♦ 20
3
votes
3
answers
4.7k
views
5 follow
3
answers
Per Sample Mpileup Output From Merged Bam File
samtools mpileup written 6.5 years ago by thomasvangurp10 • updated 21 days ago by wkretzsch0
2
votes
1
answer
5.1k
views
5 follow
1
answer
Mpileup File From Samtools
varscan mpileup written 6.3 years ago by tejaswikoganti60 • updated 6.3 years ago by Pierre Lindenbaum128k
10
votes
1
answer
9.5k
views
5 follow
1
answer
Mpileup With A Region File
samtools variant mpileup chip-seq written 6.3 years ago by Dataminer2.7k • updated 6.3 years ago by Devon Ryan95k
16
votes
3
answers
6.9k
views
5 follow
3
answers
3
votes
3
answers
8.7k
views
5 follow
3
answers
1
vote
1
answer
536
views
5 follow
1
answer
Can you get mpileup to report positions with coverage of 0?
samtools mpileup written 23 months ago by blur110 • updated 23 months ago by Devon Ryan95k
2
votes
1
answer
1.1k
views
5 follow
1
answer
15
votes
2
answers
15k
views
2
answers
What Is The Difference Between Samtools Mpileup And Pileup
indel pileup samtools mpileup snp written 9.2 years ago by Ian5.6k • updated 9.2 years ago by lh332k
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