Showing: mpileupreset
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18
votes
8
answers
12k
views
16 follow
8
answers
Calculate The Frequency Of Nucleotides At Each Position In An Mpileup File
mpileup written 2.9 years ago by komal.rathi2.7k • updated 23 months ago by inesdesantiago120
4
votes
6
answers
8.2k
views
11 follow
6
answers
Variant Calling With Bcftools Call
variant-calling bcftools samtools mpileup written 2.9 years ago by tayebwajb80 • updated 12 months ago by vladimir.kovacevic30
6
votes
3
answers
7.4k
views
9 follow
3
answers
11
votes
5
answers
7.5k
views
9 follow
5
answers
Extract Base Based On Position From Bam File
samtools mpileup written 4.7 years ago by Empyrean150 • updated 4 months ago by stephanieP0
8
votes
2
answers
4.1k
views
8 follow
2
answers
Changing Quality Scores Within Bam Files
fastq bam samtools mpileup written 4.5 years ago by matted6.3k • updated 4.5 years ago by Lee Katz2.8k
6
votes
1
answer
4.3k
views
8 follow
1
answer
How To Make Samtools Mpileup Produce Genotype Information At Every Base?
samtools bcftools mpileup written 3.3 years ago by komal.rathi2.7k • updated 3.3 years ago by Istvan Albert ♦♦ 69k
14
votes
3
answers
13k
views
7 follow
3
answers
Snp Quality In Vcf File
vcf dbsnp mpileup snp written 5.7 years ago by Tiffani120 • updated 5.7 years ago by Chris Miller17k
4
votes
1
answer
1.2k
views
7 follow
1
answer
Wgs: Variant Calling Per Chr Or Region?
mpileup written 3.7 years ago by mathiasf5220 • updated 3.7 years ago by Ashutosh Pandey10k
4
votes
2
answers
8.8k
views
6 follow
2
answers
What Is Mpileup Data And Where Is The Snp Data?
samtools snp mpileup written 5.2 years ago by Sortinghat10 • updated 15 months ago by Biostar ♦♦ 10
7
votes
2
answers
8.3k
views
6 follow
2
answers
6
votes
2
answers
7.8k
views
6 follow
2
answers
5
votes
2
answers
2.6k
views
6 follow
2
answers
Mapping Quality 0 Reads And Variant Calling
gatk bwa mpileup written 3.4 years ago by huskerjeff49280 • updated 3.4 years ago by Jorge Amigo9.4k
5
votes
3
answers
2.8k
views
6 follow
3
answers
Snp Calling Of Tcga Data Using Samtools
samtools tcga snp mpileup transcriptome exome written 3.3 years ago by pm201350 • updated 3.2 years ago by tayebwajb80
6
votes
2
answers
8.3k
views
5 follow
2
answers
Samtools Mpileup Output
samtools sam mpileup written 5.8 years ago by Sam30 • updated 5.8 years ago by Nina310
17
votes
1
answer
6.3k
views
5 follow
1
answer
5
votes
2
answers
3.1k
views
5 follow
2
answers
Sam Tools Pileup Format
format samtools mpileup written 4.9 years ago by Vittorio Fortino20 • updated 6 weeks ago by Biostar ♦♦ 10
2
votes
1
answer
2.6k
views
5 follow
1
answer
Mpileup File From Samtools
varscan mpileup written 3.0 years ago by tejaswikoganti60 • updated 3.0 years ago by Pierre Lindenbaum89k
13
votes
3
answers
3.8k
views
5 follow
3
answers
4
votes
0
answers
132
views
5 follow
0
answers
14
votes
2
answers
10k
views
2
answers
What Is The Difference Between Samtools Mpileup And Pileup
indel pileup samtools mpileup snp written 6.0 years ago by Ian4.7k • updated 6.0 years ago by lh328k
11
votes
2
answers
2.7k
views
2
answers
Mpileup Variant Call
mpileup written 5.6 years ago by Tiffani120 • updated 5.6 years ago by lh328k
4
votes
3
answers
5.1k
views
3
answers
How To Filter The Snps/Indel Results From Mpileup?
mpileup written 5.6 years ago by Haiping100 • updated 15 months ago by Biostar ♦♦ 10
21
votes
3
answers
2.7k
views
3
answers
Can I Convert Fasta Lowercase Bases To 'N'?
read samtools mpileup conversion written 5.3 years ago by User 808720 • updated 4.9 years ago by Frédéric Mahé2.5k
1
vote
3
answers
1.8k
views
3
answers
Samtools Mpileup Directional Coverage
samtools coverage mpileup written 5.0 years ago by User 187410 • updated 5.0 years ago by Pierre Lindenbaum89k
5
votes
3
answers
1.7k
views
3
answers
Some Help Understanding With Mpileup Output
samtools mpileup written 4.6 years ago by Lee Katz2.8k • updated 2.6 years ago by swbarnes22.6k
5
votes
1
answer
3.4k
views
1
answer
Mpileup Output And Quality Scores
mpileup written 4.5 years ago by NextGenSeek290
0
votes
3
answers
1.4k
views
3
answers
Mpileup -D And -S
vcf mpileup written 4.3 years ago by GPR280 • updated 4.3 years ago by swbarnes22.6k
5
votes
1
answer
2.0k
views
1
answer
3
votes
0
answers
1.7k
views
0
answers
1
vote
2
answers
1.8k
views
2
answers
Input Error Using Varscan2.3
error mpileup written 3.8 years ago by Jordan980 • updated 3.5 years ago by dankoboldt140
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