Showing: mpileupreset
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19
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1
answer
7.2k
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7 follow
1
answer
14
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1
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5.3k
views
1
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Samtools: Local Realignment Around Indel
indel samtools mpileup written 6.9 years ago by Nanada70 • updated 4.2 years ago by Biostar ♦♦ 20
19
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8
answers
17k
views
16 follow
8
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Calculate The Frequency Of Nucleotides At Each Position In An Mpileup File
mpileup written 4.2 years ago by komal.rathi3.2k • updated 3.2 years ago by inesdesantiago140
11
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2
answers
3.6k
views
11 follow
2
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Mapping Quality 0 Reads And Variant Calling
gatk bwa mpileup written 4.6 years ago by huskerjeff492160 • updated 4.6 years ago by Jorge Amigo10k
16
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3
answers
18k
views
8 follow
3
answers
Snp Quality In Vcf File
vcf dbsnp mpileup snp written 6.9 years ago by Tiffani120 • updated 6.9 years ago by Chris Miller19k
13
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1
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5.8k
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1
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Samtools Mpileup Vs Pileup: Multiple Samples And Gt=0/0
bam samtools mpileup written 6.2 years ago by Pierre Lindenbaum107k • updated 5.2 years ago by Christof Winter910
11
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2
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10k
views
10 follow
2
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9
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3
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9.6k
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12 follow
3
answers
6
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1
answer
5.7k
views
8 follow
1
answer
How To Make Samtools Mpileup Produce Genotype Information At Every Base?
samtools bcftools mpileup written 4.5 years ago by komal.rathi3.2k • updated 4.5 years ago by Istvan Albert ♦♦ 76k
8
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1
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3.2k
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1
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Difference between samtools DEPTH and MPILEUP
reads samtools chip-seq mpileup depth written 19 months ago by ariel.balter130 • updated 19 months ago by Devon Ryan79k
14
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2
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12k
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2
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What Is The Difference Between Samtools Mpileup And Pileup
indel pileup samtools mpileup snp written 7.2 years ago by Ian5.2k • updated 7.2 years ago by lh330k
7
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2
answers
9.9k
views
5 follow
2
answers
Samtools Mpileup Output
samtools sam mpileup written 7.0 years ago by Sam30 • updated 7.0 years ago by Nina330
3
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1
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1.9k
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1
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11
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2
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3.2k
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2
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Mpileup Variant Call
mpileup written 6.9 years ago by Tiffani120 • updated 6.9 years ago by lh330k
5
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1
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2.5k
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1
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Why Are The Samtools/Bcftools Pv4 T-Tests One Sided?
vcf bcftools mpileup statistics written 6.6 years ago by Casbon3.2k • updated 6.6 years ago by lh330k
8
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1
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2.1k
views
1
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Filtering Pcr Duplicates In Mpileup
duplicates samtools mpileup pcr written 6.6 years ago by Les Ander100 • updated 6.6 years ago by Zhidkov560
3
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0
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2.5k
views
0
answers
Consensus With Mpileup
mpileup written 6.5 years ago by Dunand30 • updated 4.4 years ago by Biostar ♦♦ 20
9
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2
answers
5.3k
views
10 follow
2
answers
Changing Quality Scores Within Bam Files
fastq bam samtools mpileup written 5.8 years ago by matted6.7k • updated 5.8 years ago by Lee Katz2.9k
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1
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2.7k
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1
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3
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0
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2.3k
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0
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15
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3
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5.4k
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5 follow
3
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6
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3.0k
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1
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3
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0
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671
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9
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1
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1.5k
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Vcf Vs Sam Output
vcf mpileup pileup sam written 6.9 years ago by Tiffani120 • updated 6.9 years ago by Istvan Albert ♦♦ 76k
2
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0
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3.0k
views
0
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Mpileup By Samtools And How To Get The Counts Per Allele Per Position In The Vcf
vcf mpileup snp written 6.6 years ago by Deniz170 • updated 6.6 years ago by Pierre Lindenbaum107k
24
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3
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3.4k
views
3
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Can I Convert Fasta Lowercase Bases To 'N'?
read samtools mpileup conversion written 6.6 years ago by User 808720 • updated 6.1 years ago by Frédéric Mahé2.7k
5
votes
2
answers
4.0k
views
5 follow
2
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Sam Tools Pileup Format
format samtools mpileup written 6.2 years ago by Vittorio Fortino20 • updated 16 months ago by Biostar ♦♦ 20
7
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1
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2.0k
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1
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What Does A "*" (Star) Mean In Mpileup'S "Read Bases" Column (The 5Th Column)?
mpileup written 6.1 years ago by Panos1.6k • updated 6.1 years ago by Russh1.2k
12
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5
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9.6k
views
10 follow
5
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Extract Base Based On Position From Bam File
samtools mpileup written 5.9 years ago by Empyrean160 • updated 19 months ago by stephanieP0
6
votes
2
answers
9.7k
views
6 follow
2
answers
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