Showing: mpileupreset
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19
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1
answer
6.5k
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7 follow
1
answer
14
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1
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4.8k
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1
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Samtools: Local Realignment Around Indel
indel samtools mpileup written 5.9 years ago by Nanada70 • updated 3.2 years ago by Biostar ♦♦ 10
19
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8
answers
13k
views
16 follow
8
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Calculate The Frequency Of Nucleotides At Each Position In An Mpileup File
mpileup written 3.2 years ago by komal.rathi2.8k • updated 2.2 years ago by inesdesantiago130
14
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3
answers
14k
views
7 follow
3
answers
Snp Quality In Vcf File
vcf dbsnp mpileup snp written 5.9 years ago by Tiffani120 • updated 5.9 years ago by Chris Miller18k
13
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1
answer
4.9k
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1
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Samtools Mpileup Vs Pileup: Multiple Samples And Gt=0/0
bam samtools mpileup written 5.2 years ago by Pierre Lindenbaum93k • updated 4.2 years ago by Christof Winter840
6
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1
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4.6k
views
8 follow
1
answer
How To Make Samtools Mpileup Produce Genotype Information At Every Base?
samtools bcftools mpileup written 3.5 years ago by komal.rathi2.8k • updated 3.5 years ago by Istvan Albert ♦♦ 71k
14
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2
answers
11k
views
2
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What Is The Difference Between Samtools Mpileup And Pileup
indel pileup samtools mpileup snp written 6.2 years ago by Ian4.8k • updated 6.2 years ago by lh329k
6
votes
2
answers
8.6k
views
5 follow
2
answers
Samtools Mpileup Output
samtools sam mpileup written 6.0 years ago by Sam30 • updated 6.0 years ago by Nina310
3
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1
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1.6k
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1
answer
11
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2
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2.8k
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2
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Mpileup Variant Call
mpileup written 5.9 years ago by Tiffani120 • updated 5.9 years ago by lh329k
5
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1
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2.1k
views
1
answer
Why Are The Samtools/Bcftools Pv4 T-Tests One Sided?
vcf bcftools mpileup statistics written 5.6 years ago by Casbon3.1k • updated 5.6 years ago by lh329k
8
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1
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1.8k
views
1
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Filtering Pcr Duplicates In Mpileup
duplicates samtools mpileup pcr written 5.6 years ago by Les Ander100 • updated 5.6 years ago by Zhidkov550
3
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0
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2.1k
views
0
answers
Consensus With Mpileup
mpileup written 5.5 years ago by Dunand30 • updated 3.4 years ago by Biostar ♦♦ 10
6
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3
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8.0k
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9 follow
3
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7
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2
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8.7k
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6 follow
2
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5
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1
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2.2k
views
1
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3
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0
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1.8k
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0
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5
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2
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2.8k
views
6 follow
2
answers
Mapping Quality 0 Reads And Variant Calling
gatk bwa mpileup written 3.6 years ago by huskerjeff49290 • updated 3.6 years ago by Jorge Amigo9.6k
13
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3
answers
4.1k
views
5 follow
3
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3
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0
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301
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0
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9
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1
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1.2k
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1
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Vcf Vs Sam Output
vcf mpileup pileup sam written 5.9 years ago by Tiffani120 • updated 5.9 years ago by Istvan Albert ♦♦ 71k
2
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0
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2.5k
views
0
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Mpileup By Samtools And How To Get The Counts Per Allele Per Position In The Vcf
vcf mpileup snp written 5.6 years ago by Deniz160 • updated 5.6 years ago by Pierre Lindenbaum93k
22
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3
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2.9k
views
3
answers
Can I Convert Fasta Lowercase Bases To 'N'?
read samtools mpileup conversion written 5.6 years ago by User 808720 • updated 5.1 years ago by Frédéric Mahé2.5k
5
votes
2
answers
3.3k
views
5 follow
2
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Sam Tools Pileup Format
format samtools mpileup written 5.2 years ago by Vittorio Fortino20 • updated 4 months ago by Biostar ♦♦ 10
7
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1
answer
1.5k
views
1
answer
What Does A "*" (Star) Mean In Mpileup'S "Read Bases" Column (The 5Th Column)?
mpileup written 5.1 years ago by Panos1.5k • updated 5.1 years ago by Russh1.2k
11
votes
5
answers
8.0k
views
9 follow
5
answers
Extract Base Based On Position From Bam File
samtools mpileup written 4.9 years ago by Empyrean150 • updated 7 months ago by stephanieP0
8
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2
answers
4.4k
views
8 follow
2
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Changing Quality Scores Within Bam Files
fastq bam samtools mpileup written 4.8 years ago by matted6.4k • updated 4.8 years ago by Lee Katz2.8k
6
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2
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8.3k
views
6 follow
2
answers
6
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1
answer
4.8k
views
1
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Mpileup With A Region File
samtools variant mpileup chip-seq written 3.2 years ago by Dataminer2.4k • updated 3.2 years ago by Devon Ryan65k
3
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1
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3.5k
views
1
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BCFtools outputs error : [bcf_sync] incorrect number of fields (6 != 5)
bcftools bam samtools mpileup written 2.9 years ago by madkitty500 • updated 2.5 years ago by Biostar ♦♦ 10
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