multiintersectbed Posts

Latest

Open

RNA-Seq

ChIP-Seq

SNP

Assembly

Tutorials

Tools

Jobs

Forum

Planet

All »

Home

Welcome to Biostar! about • faq • rss

Community

Log In

Sign Up

Add New Post

Showing selected topics • reset

or Classic search

votes

answer

views

answer

Using multiIntersectBed to filter original bed files

bedtools multiintersectbed written 15 days ago by williamtmills • 0 • updated 15 days ago by Alex Reynolds ♦ 31k

vote

answer

1.2k

views

answer

multiIntersectBed Error: The requested bed file could not be opened. Exiting!

genome bedtools multiintersectbed written 2.5 years ago by yren0429 • 0

Recent Votes

Recent Locations • All »

United States, 6 minutes ago

Recent Awards • All »

Teacher to Mensur Dlakic • 9.0k
Scholar to Pancreas Pratik • 110
Scholar to JC ♦ 12k
Teacher to Kevin Blighe ♦ 70k
Teacher to i.sudbery ♦ 11k
Teacher to i.sudbery ♦ 11k

Recent Replies

C: LImma design matrix and contrast matrix creation by dare_devil • 1.4k
Can you update your `targets` file here
C: FastQC per base to total base calculator by GenoMax ♦ 96k
FastQC produces a companion zip archive that should contain all the data used for generating Fast...
A: bcftools command not working by GenoMax ♦ 96k
Most likely. Power9 CPU's are not compatible with x86 binary that you likely downloaded. You will...
C: Downloading multiple studies SRA data through while loop by GenoMax ♦ 96k
Did you verify that `esearch` is bringing back valid results for all queries? For many accessions...
A: How do I use FindAllMarkers after making additional cluster assignments? by Pancreas Pratik • 110
So this was solved with the help of @nbpeterson3 on the Seurat github Discussion page. So when F...
A: finding bacterial genes in dataset by john.chandler2011 • 0
Thanks, I will check it out.
C: SRA toolkit fastq files download error by opplatek • 80
You can just copy ENA fastq ftp links and downloaded them with `curl` or `wget` directly to the s...
C: Very high ratio of cases to controls - how to increase statistical power? by mfshiller • 10
That's actually one of the solutions I thought about. Either: 1. increasing sample size 2. corre...
A: Cytoscape - long list of proteins, very messy result by Mensur Dlakic • 9.0k
It would be very difficulty to see individual proteins and their interactions when the number is ...
C: Cytoscape - long list of proteins, very messy result by Ram ♦ 32k
Please see https://www.biostars.org/p/309884/ to add your images properly. You need **the direct ...
C: Very small quantity of adapter contamination, real or not? by GenoMax ♦ 96k
If you are going to use `stacks` then that should work.
A: Enrichment Analysis, Clustering and Scoring with pathfindR by volkanergin • 0
Hi, I have two similar DEG lists, one worked very well with pathfindR, but the 2nd one failed ...

Content

Help

About
FAQ

Access

RSS
Stats
API

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Traffic: 1686 users visited in the last hour