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Network modeling of data produced by mixOmics (R) in Cytoscape

network mixomics multiomics cytoscape written 25 days ago by IrK • 30

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News: Subchallenge 2 of the precisionFDA NCI-CPTAC Mislabeling Challenge

omics news challenge multiomics written 6 months ago by sprezek • 40

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286

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Forum: Survey - Tell me about your Bioinformatics struggles

forum dna-seq multiomics rna-seq computational biology written 7 months ago by polina99 • 0 • updated 7 months ago by jrj.healey ♦ 12k

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Applying WGCNA in multiple data types

wgcna correlation multiomics written 9 months ago by rin • 30 • updated 8 months ago by Kevin Blighe ♦ 44k

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810

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News: Webinar: Multi-omics: Challenges, opportunities and application to biomarker discovery

next-gen cancer news sequencing multiomics biomarker written 24 months ago by Persistent LABS • 740

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Tutorial: Webinar on 'An integrated RNA and DNA approach to unravel genetic regulation in cancer' on 25 Feb

cancer tutorial snp gene regulation multiomics rna-seq written 4.4 years ago by Genomics • 70

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Recent Replies

C: Setting colour palettes correctly for correlation plots by Jean-Karim Heriche ♦ 19k
check the breaks option.
C: About DESeq2 analysis by H.Chloe • 0
Thanks for your answers and this is my BED file. Geneid Chr Start End Strand Length drip.wh...
C: Copying selective fastq files from a dir to another by jibran.tahir • 0
Great, it worked very well- just added bsub to the start to put the job on back end, cheers
A: how to switch REF and ALT alleles in VCF files if the REF is incorrect according by Shicheng Guo • 7.5k
Now I get the best solution with vcftools bcftools view -T ^remove.txt $i -Ov | bcftools nor...
C: How to clean this strange VCF file? by Shicheng Guo • 7.5k
First, thanks so much for the help! Second, I guess I can remove these columns with single '0'...
C: How to clean this strange VCF file? by cmdcolin • 1.2k
0/0 and ./. actually mean different things (this was a surprise to me at one point also). The ./....
C: About DESeq2 analysis by H.Chloe • 0
Thanks for your comment and I am sorry for my explanations. I created an RNA-seq count table usin...
C: Setting colour palettes correctly for correlation plots by exin • 50
Here we go: cts<- read.table("cor_gene.txt",header=T,row.names=1,sep="\t") cts<- ...
C: Improvement of genome assembly using illumina contigs and nanopore reads by KG • 10
Thanks for your suggestions. I'll give it a try and use nanopore polishing tools. We have not g...
A: About DESeq2 analysis by h.mon ♦ 26k
The [DESeq2 vignette][1] provides ample information on almost all aspects of a differential expre...
C: Setting colour palettes correctly for correlation plots by Friederike ♦ 4.3k
can you provide the entire code you use for the heatmap generation, not just the color part? (dif...
C: How to correctly filer out gene expression matrix by measuring Pearson correlati by Jurat Shahidin • 60
thanks for your reply. I got this error after I remove `0+`: > row dimension of design doesn'...

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