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How to tell whether an MSA result is good and how to set parameters?
alignment multiple sequence alignment written 6 weeks ago by wuqingkuangsha • 20 • updated 6 weeks ago by dago • 2.5k
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2
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641
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alignment with phylogenetic tree
phylogenetic tree multiple sequence alignment written 3 months ago by qwzhang0601 • 60
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1
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151
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obstain 100-way alignment of 100 species for a certain gene
100-way alignment multiple sequence alignment written 3 months ago by qwzhang0601 • 60
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1
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204
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How to obtain multiple sequence alignments of genomes of selected vertebrate species?
multiple sequence alignment written 3 months ago by kousi31 • 0 • updated 3 months ago by andrew.j.skelton73 ♦ 5.8k
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224
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Generate nucleotide multiple sequence alignment from protein alignment?
multiple sequence alignment written 6 months ago by molly77 • 10 • updated 6 months ago by h.mon ♦ 28k
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333
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Phylogeny Heatmap with Python
multiple sequence alignment written 8 months ago by marina.gerges • 0
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326
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Mauve export similarity
multiple sequence alignment mauve written 15 months ago by rmf • 750 • updated 13 months ago by Biostar ♦♦ 20
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504
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Error while running MEGAX
multiple sequence alignment megax written 17 months ago by Mohak • 10
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Multiple Sequence Alignment Python
clustlw multiple sequence alignment biopython written 18 months ago by Manu Madhavan • 20
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557
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Multiple sequence alignment over all 3'UTRs of a genome
genome alignment multiple sequence alignment 3'utr written 20 months ago by aramis.1994 • 10 • updated 20 months ago by lieven.sterck ♦ 6.2k
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Blast-XML and Biopython: extract query-anchored results (i.e. MSA)
xml multiple sequence alignment biopython blast written 2.0 years ago by LeWöps • 0 • updated 2.0 years ago by Peter ♦ 5.8k
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3
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1.6k
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3
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Aligning de-novo assembly to reference strain genome
multiple sequence alignment denovo assembly written 2.8 years ago by aindap • 110 • updated 2.1 years ago by asur • 0
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558
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Rearragement Scaffolds for Mutiple Sequence Alignment
post assembly multiple sequence alignment written 2.2 years ago by febrigunawan48 • 0
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1
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How do matrix weights for amino acid 'X' affect protein alignments in MUSCLE?
amino acids multiple sequence alignment muscle written 2.3 years ago by rleach • 120
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Find conserved blocks and extract subalignment with Python
conserved edges python multiple sequence alignment written 2.5 years ago by Kevin D • 30
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1
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multiple sequence alignment for validation of large indels
indels cnvnator multiple sequence alignment written 2.8 years ago by thomas.welch • 10
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2.2k
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Sequence alignment length
length multiple sequence alignment written 2.8 years ago by biobudhan • 20
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827
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Gettin Consensus From Multiple Whole Genomes
multiple sequence alignment whole genome alignment written 2.9 years ago by nilaylale88 • 0 • updated 2.8 years ago by Biostar ♦♦ 20
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Get pairwise scores from alignment without re-aligning?
alignment multiple sequence alignment bit score written 2.9 years ago by mpd • 0
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827
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How to use SABmark 1.65 as a benchmark?
multiple sequence alignment benchmark sabmark written 3.1 years ago by Jay • 0
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1
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Does anyone know how to build a local conserved domain database from multiple sequence alignment for running RPS-Blast locally?
rps-blast multiple sequence alignment blast written 3.4 years ago by BioPotato • 0 • updated 3.3 years ago by marchlerbauer • 20
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phyML Unknown character state : (? in black diamond)
phyml phylogenetics multiple sequence alignment written 3.4 years ago by ddowlin • 70
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1
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Filtering SNPs from a multi sequence alignment
filter multiple sequence alignment snp written 3.5 years ago by natasha • 0 • updated 3.5 years ago by Brice Sarver • 3.2k
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3
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1.5k
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3
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Extracting and joining exons from multiple sequence alignments using PERL
perl fasta multiple sequence alignment exons written 3.6 years ago by Eskimo • 90
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1.3k
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Using a Multiple Seq Alignment tool for pairwise alignments possible?
alignment multiple sequence alignment msa written 3.6 years ago by nchuang • 200
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Obtain heterozyous/IUPAC consensus sequences from multiple sequence alignment
iupac heterozygous multiple sequence alignment written 4.4 years ago by Louis Kok • 10
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Multiple sequence alignment of sequenecs of different length
multiple sequence alignment written 4.5 years ago by rosies • 0 • updated 4.5 years ago by arnstrm • 1.7k
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1
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1.3k
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Tool for removing bad quality sequences from MSA
multiple sequence alignment written 4.6 years ago by RT • 340 • updated 4.6 years ago by HA • 0
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CookbookMSA Multiple Sequence Alignement error in biojava demo
biojava multiple sequence alignment cookbook written 5.2 years ago by ewa_kania-15 • 0 • updated 5.2 years ago by andreas.prlic • 290
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Question about assess Multiple Sequence Alignment
multiple sequence alignment msa isoform written 5.5 years ago by Chong Tang • 90 • updated 5.5 years ago by Devon Ryan ♦ 92k
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