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Recent Votes
- hisat2_extract_splice_sites.py doesn't work
- A: How to plot copy number variation profile in R?
- A: How to plot copy number variation profile in R?
- C: How to plot copy number variation profile in R?
- C: impute2 output files to vcf
- Map gene presence/absence (i.e. gain, loss, duplication) on phylogenetic tree
- A: Adding ggplot2 chromosome position variable
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Recent Replies
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C: QUAST ignoring bam files by
julien.fouret.fr • 20
I have always used QUAST but without bam Nothing is wrong about your bam and if you're using ana...
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C: Analysing BAM files by
julien.fouret.fr • 20
Yes. In my point of view, If this 5 varieties are very similar, the simpliest would be to avoid...
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C: Clustering of DAVID gene enrichment results from gene expression studies by
Kevin Blighe ♦ 52k
Hey, this tutorial is old and I need to give it an 'overhaul'. What is the output of: str(DA...
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C: Whole Exome Sequencing analysis pipeline by
German.M.Demidov • 1000
Try Cancer Genome Interpreter from Nuria López Bigaz lab :)
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C: Unknown trimmer, single end, i tried other solutions but not soved. by
adrieltanillorosa • 0
i really love you, its work, thanks. S2
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C: Whole Exome Sequencing analysis pipeline by
Rick P • 10
Yes, I know that. Thanks again. One more question, as any pipeline has not clarified it to me: A...
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C: Map gene presence/absence (i.e. gain, loss, duplication) on phylogenetic tree by
Dr. Mabuse ♦ 47k
Maybe you can do with the ETE library. I am guessing you have files in the format of "taxid prope...
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C: Unknown trimmer, single end, i tried other solutions but not soved. by
adrieltanillorosa • 0
the path to archive
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C: impute2 output files to vcf by
tarek.mohamed • 250
I was able to get the genotypes as follows, re-ran impute2 with flag `-phase` to generate haplot...
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C: How to plot copy number variation profile in R? by
reui879 • 10
Thank you! When I plot plotLRR(kp, tiles, ymin=0, ymax=5, add.axis = FALSE, labels=NA) with my ...
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A: How to plot copy number variation profile in R? by
reui879 • 10
Thank you! When I plot plotLRR(kp, tiles, ymin=0, ymax=5, add.axis = FALSE, labels=NA) wit...
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C: impute2 output files to vcf by
chrchang523 ♦ 6.1k
For now, the most efficient way to do this depends on what information you need in the VCF. Do y...
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