Showing: mutect2reset
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GATK4 Mutect2 variants IDs not shown
gatk4 variant calling mutect2 written 28 days ago by dganiewich30 • updated 28 days ago by Pierre Lindenbaum118k
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Qs about mutect2
gatk wes mutect2 written 5 months ago by walker10
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[STAR] 255 Mapping Quality
star rna-seq mutect2 written 3.1 years ago by umn_bist320 • updated 6 months ago by RamRS20k
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[GATK] Weird error using Picard SortVcf on COSMIC file
gatk picard rna-seq mutect2 written 3.1 years ago by umn_bist320 • updated 6 months ago by RamRS20k
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Somatic variant call
varscan2.3.9 somatic mutect2 snp variat-filtering written 23 months ago by sktbanerjee130 • updated 14 months ago by liangqinsi20
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How to make variant calling run faster?
variant calling gatk mutect2 written 17 months ago by steve1.9k • updated 17 months ago by Brian Bushnell16k
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Is there any way to generate interval list from available exome data?
exome gatk sequencing mutect2 written 18 months ago by Karma200 • updated 18 months ago by Pierre Lindenbaum118k
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How to filter mutect2 VCF output?
gatk alignment snp mutect2 written 21 months ago by Whoknows700 • updated 20 months ago by poisonAlien2.7k
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Any better ways to filter GATK Mutect2 output?
vcf gatk mutect2 written 2.7 years ago by ShirleyDai40 • updated 2.1 years ago by igor7.4k
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MuTect2 - vcf 4.1 instead of vcf 4.2
vcf gatk rna-seq mutect2 written 2.9 years ago by umn_bist320 • updated 2.8 years ago by Biostar ♦♦ 20
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MuTect2's variants missing QUAL score
vcf 4.2 gatk rna-seq mutect2 written 3.0 years ago by umn_bist320 • updated 2.9 years ago by Istvan Albert ♦♦ 79k
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TCGA: Bash assigning a tumor to its match normal
tcga rna-seq mutect2 written 3.1 years ago by umn_bist320 • updated 3.0 years ago by Biostar ♦♦ 20
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[GATK] [MuTect2] [RNA-Seq] Adding read group ahead of annotations
gatk picard rna-seq mutect2 written 3.1 years ago by umn_bist320 • updated 3.1 years ago by Patrick_Reed0
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Reference and dbSNP incompatibility issue (MuTect2)
gatk ucsc.hg19.fa dbsnp rna-seq mutect2 written 3.2 years ago by umn_bist320 • updated 3.2 years ago by Chris Miller20k
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