Showing: mutect2reset
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Somatic variant calling mutect2 tumour only
gatk snp mutect2 written 4 days ago by cellulebioinfobiscem10 • updated 4 days ago by benformatics1.2k
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Creating a panel of normal from one normal sample
variant-calling gatk mutect2 panelofnormals written 21 days ago by Jordan1.1k • updated 11 days ago by Kevin Blighe52k
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How to get individual strand counts from Mutect2 for multi-allelic sites
gatk4 vcf mutect2 written 3 months ago by nickeener0 • updated 4 weeks ago by Biostar ♦♦ 20
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GATK4 (4.1.2.0) Mutect2 --germline-resource option
gatk4 mutect2 written 8 weeks ago by romagnoli.simone0 • updated 8 weeks ago by RamRS25k
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GATK FilterMutectCalls parameter max germline posterior ?
gatk threshold tool mutect2 written 3 months ago by jackyen0 • updated 3 months ago by ATpoint26k
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Can Mutect2 be used for paper?
gatk mutect2 written 4 months ago by Laven90 • updated 4 months ago by Nicolas Rosewick8.5k
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Running mutect2 without PON
mutect2 written 4 months ago by ar.satkhol180
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Mutect2 (GATK4, Java8) outputs empty VCF file for tumor only mode
snv rna-seq mutect2 written 4 months ago by ResearchR70 • updated 4 months ago by RamRS25k
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How to interpret the output of gatk?
gatk vcf2maf mutect2 written 5 months ago by Laven90 • updated 5 months ago by zephyr_falcon80
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Usage of Mutect2
gatk next-gen snp rna-seq mutect2 written 5 months ago by gprashant1760 • updated 5 months ago by MatthewP320
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Mutect2 "somatic" variants with resistant tissue culture lines
gatk wes mutect2 variants genotyping written 8 months ago by shawn.w.foley1.1k • updated 7 months ago by Biostar ♦♦ 20
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Creating a PON in GATK
wgs gatk mutect2 written 7 months ago by A3.6k
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What is the tlod in vcf?
gatk tlod mutect2 written 8 months ago by 2yuna71010
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Qs about mutect2
gatk wes mutect2 written 13 months ago by walker30
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[STAR] 255 Mapping Quality
star rna-seq mutect2 written 3.8 years ago by umn_bist350 • updated 14 months ago by RamRS25k
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[GATK] Weird error using Picard SortVcf on COSMIC file
gatk picard rna-seq mutect2 written 3.8 years ago by umn_bist350 • updated 14 months ago by RamRS25k
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