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panel of normal files
gatk panel-of-normal hg38 mutect2 hg19 written 4 months ago by cocchi.e8990 • updated 5 days ago by L_LANKA0
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GATK Mutect2 tumor mode
wgs tumor mutect2 human gatk written 24 days ago by cocchi.e8990
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GATK Mutect2 Panel-Of-Normals generation
gatk panel-of-normal non-tumor wes mutect2 written 12 weeks ago by cocchi.e8990 • updated 12 weeks ago by WouterDeCoster44k
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Somatic mutations per gene
gene R vcf mutect2 somatic mutation written 15 months ago by zephyr_falcon80 • updated 8 months ago by ekwame60
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Somatic variant calling mutect2 tumour only
gatk snp mutect2 written 10 months ago by cellulebioinfobiscem10 • updated 8 months ago by newbio17240
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Creating a panel of normal from one normal sample
variant-calling gatk mutect2 panelofnormals written 10 months ago by Jordan1.2k • updated 10 months ago by Kevin Blighe65k
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How to get individual strand counts from Mutect2 for multi-allelic sites
gatk4 vcf mutect2 written 12 months ago by nickeener50 • updated 11 months ago by Biostar ♦♦ 20
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GATK4 (4.1.2.0) Mutect2 --germline-resource option
gatk4 mutect2 written 11 months ago by romagnoli.simone0 • updated 11 months ago by RamRS30k
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GATK FilterMutectCalls parameter max germline posterior ?
gatk threshold tool mutect2 written 13 months ago by jackyen0 • updated 13 months ago by ATpoint39k
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Can Mutect2 be used for paper?
gatk mutect2 written 14 months ago by Laven90 • updated 14 months ago by Nicolas Rosewick9.0k
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Running mutect2 without PON
mutect2 written 14 months ago by ar.satkhol180
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Mutect2 (GATK4, Java8) outputs empty VCF file for tumor only mode
snv rna-seq mutect2 written 14 months ago by ResearchR70 • updated 14 months ago by RamRS30k
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How to interpret the output of gatk?
gatk vcf2maf mutect2 written 15 months ago by Laven90 • updated 15 months ago by zephyr_falcon80
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Usage of Mutect2
gatk next-gen snp rna-seq mutect2 written 15 months ago by gprashant1770 • updated 15 months ago by MatthewP760
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Mutect2 "somatic" variants with resistant tissue culture lines
gatk wes mutect2 variants genotyping written 17 months ago by shawn.w.foley1.2k • updated 17 months ago by Biostar ♦♦ 20
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Creating a PON in GATK
wgs gatk mutect2 written 17 months ago by A3.9k
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