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Can't Make Sense Of Gene Symbols

python gene symbol gene ontology entrez mygene written 4 months ago by sinifdosyalari12h • 20

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Returning gene functional annotations with gene symbols as input (using mygene Bioconductor package)

R chip-seq rna-seq mygene written 18 months ago by Bohdan Khomtchouk • 320 • updated 18 months ago by EagleEye ♦ 6.1k

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How to Find OMIM id's of Disease Corresponding to a List of Gene Symbols in R?

gene R omim disease mygene written 3.7 years ago by pankajnarula84 • 10 • updated 2.5 years ago by EagleEye ♦ 6.1k

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Use Python (e.g. mygene, biomart, db2db) to convert GO Terms to all genes in pathway

gene python ontology pathway mygene written 3.2 years ago by jolespin • 110 • updated 2.5 years ago by Newgene • 340

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Recent Replies

C: Problem with newSCESet(countData=all.counts) function by bk11 • 30
Thank you Santosh. `library(scater)` was loaded and still could not find function `"newSECSet"`
A: How do I interpret genotype likelihood in the VCF format? by colin.kern • 180
Ok, it seems like the order is 0/0, 0/1, 1/1, but the numbers are normalized by the most likely g...
C: OMA core dumped error in a single node/machine by adrian.altenhoff • 440
ok, thanks for the update. Ubuntu14.04 should in principle work fine - we have tested OmaStandalo...
C: OMA core dumped error in a single node/machine by andrespara • 0
Thanks Adrian, we will try to reproduce the error in other machines, by the way those machines ha...
C: OMA core dumped error in a single node/machine by adrian.altenhoff • 440
Dear andre, can you reproduce this error also on a different compute node? The error indicates i...
C: Randomly sample motifs from reference sequence by jrj.healey ♦ 10k
Hmm yeah perhaps that would work. You'll have to decide what you do if it returns the same kmer i...
C: Filtering sam/bam by using CIGAR deletion sites by ag1194 • 0
With samtools view & awk tools, I cannot keep the header in my output bam. Is there a way to ...
C: vcf-merge outputting all genotypes as ./. by finswimmer ♦ 9.0k
I'm afraid this will not work. To compare variants or merge variant information is absolut mandat...
A: OMA cannot evaluate boolean by adrian.altenhoff • 440
Hi Thomas the error indicate that some parameter is undefined or alternatively the input data mi...
C: Loop over .sai files coupled with .fastq.gz by RamRS ♦ 20k
Talk to the sysadmin, I'm sure parallel is just a `module load parallel` away.
C: Randomly sample motifs from reference sequence by banerjeeshayantan • 80
Say there are 2899452029 base pairs in the reference genome. Then I can choose the starting posit...
C: Randomly sample motifs from reference sequence by jrj.healey ♦ 10k
I’m not sure I fully understand what you mean but I don’t think you can just randomly choose rang...

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