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Can't Make Sense Of Gene Symbols

python gene symbol gene ontology entrez mygene written 9 weeks ago by sinifdosyalari12h • 10

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Returning gene functional annotations with gene symbols as input (using mygene Bioconductor package)

R chip-seq rna-seq mygene written 16 months ago by Bohdan Khomtchouk • 320 • updated 16 months ago by EagleEye ♦ 5.9k

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How to Find OMIM id's of Disease Corresponding to a List of Gene Symbols in R?

gene R omim disease mygene written 3.5 years ago by pankajnarula84 • 10 • updated 2.3 years ago by EagleEye ♦ 5.9k

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Use Python (e.g. mygene, biomart, db2db) to convert GO Terms to all genes in pathway

gene python ontology pathway mygene written 3.0 years ago by jolespin • 110 • updated 2.3 years ago by Newgene • 340

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Recent Replies

C: differently expressed genes by grant.hovhannisyan • 1.2k
You can check by qPCR.
C: Deletion and Duplication mutations alignment by jrj.healey ♦ 8.4k
Perhaps try `muscle` instead, I get what seems to be a sensible alignment from it: $ muscle...
C: Adaptor trimming for RNAseq by MAPK • 1.3k
Thanks for your answer. So just to be clear, should I just have >adaptor1 AGATCGGAAG...
A: Run GSEA with custom gene sets? by h.mon ♦ 21k
For the command-line, you have to prepare the gene-set in [gmt format][1], and pass it with `-g g...
A: Adaptor trimming for RNAseq by genomax ♦ 58k
I would not worry about what `NNNNN` is, if the core sequence you are trying to remove is common....
C: Adaptor trimming for RNAseq by lieven.sterck • 3.1k
and they did not provide any additional information, eg. what the index might be then? long sho...
C: Deletion and Duplication mutations alignment by RamRS ♦ 19k
Please use the formatting bar (especially the `code` option) to present your post better. I've do...
C: Adaptor trimming for RNAseq by MAPK • 1.3k
Yes, it was provided by the sequencing facility.
C: Why is 0/0 homozygous reference call in VCF useful information? by Pierre Lindenbaum ♦ 114k
> . What decisions regarding generation would affect the answer to this question? tools like ...
C: Criteria for Overlapping SNPs by WouterDeCoster ♦ 34k
> When two SNPs doesn't have the same Chromosome Position even if the > involved allele are...
C: Why is 0/0 homozygous reference call in VCF useful information? by karl.stamm ♦ 3.3k
I like to know the difference between "confident data we see hom-ref" and "no-data". Your single-...
C: What would be the trend in next few years in NGS era? by lieven.sterck • 3.1k
agreed! though they'll likely resolve that too in the future ;) I do also agree with https://ww...

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