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Can't Make Sense Of Gene Symbols

python gene symbol gene ontology entrez mygene written 17 days ago by sinifdosyalari12h • 10

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Returning gene functional annotations with gene symbols as input (using mygene Bioconductor package)

R chip-seq rna-seq mygene written 14 months ago by Bohdan Khomtchouk • 320 • updated 14 months ago by EagleEye ♦ 5.7k

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How to Find OMIM id's of Disease Corresponding to a List of Gene Symbols in R?

gene R omim disease mygene written 3.4 years ago by pankajnarula84 • 10 • updated 2.1 years ago by EagleEye ♦ 5.7k

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Use Python (e.g. mygene, biomart, db2db) to convert GO Terms to all genes in pathway

gene python ontology pathway mygene written 2.9 years ago by jolespin • 110 • updated 2.2 years ago by Newgene • 340

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Recent Replies

C: bcftools merge: does it only merge overlapping variants or all by isabel.hostettler.14 • 10
Okay thanks. But if I do it that way it will still be present in one part of the dataset (for the...
A: [limma] LogFC interpretation by russhh • 3.8k
The data stored in `exprs` is already log-transformed. The intensities on the array will be in th...
C: bcftools merge: does it only merge overlapping variants or all by finswimmer ♦ 5.4k
Hello again, please use the `ADD REPLY` button below the post you like to reply to. I'm not awa...
A: [limma] LogFC interpretation by Devon Ryan ♦ 84k
The logFC of log2 transformed values are (approximately) the difference in the group means, which...
C: Why people are not working on gene prioritization and candidate gene selection f by Michael Dondrup ♦ 44k
That's a bit of a false premise in your head-line, because some researchers and groups are certai...
C: hisat2 warning message dunring alignment of fasta file with reference genome by shuksi1984 • 30
Header and sequence are in two separate lines.
A: bcftools merge: does it only merge overlapping variants or all by isabel.hostettler.14 • 10
Thank you very much for the answer. Is there an option to only merge the overlapping variants fro...
C: gene expression analysis using RNA seq data by maryam.akram001 • 0
After normalizing with DESeq2 or edgeR will i be able to apply particle swarm optimization on nor...
C: Bowtie2 alignment with file.txt by genomax ♦ 55k
`-1` and `-2` options are comma separate lists of file names. Not a separate txt file like you sh...
C: hisat2 warning message dunring alignment of fasta file with reference genome by jrj.healey ♦ 6.8k
I've edited your markup to remove the uncessesary quotes, but it appears how you've copied them l...
A: Why people are not working on gene prioritization and candidate gene selection f by Devon Ryan ♦ 84k
Honestly, few people are using any tools other than the output of the their DE analysis and maybe...
C: Bowtie2 alignment with file.txt by Bastien Hervé • 1.9k
I never used this fonctionnality but it looks like you have to create 2 mate files (one for each ...

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