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6 follow

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change the header of fasta sequence

fasta name written 13 days ago by harry • 10 • updated 12 days ago by manvikakkar565 • 0

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1.2k

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Modify chromosome name in fasta file

fasta genome name chromosome written 11 months ago by devarora • 320 • updated 8 months ago by Biostar ♦♦ 20

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1.4k

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bulk analysis by seurat

gene name seurat rna-seq written 17 months ago by ayatrience • 0

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3.1k

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Organism name from accession numbers

organism accession sequence numbers name written 3.5 years ago by kgbenn123 • 10 • updated 3.5 years ago by Brian Bushnell ♦ 17k

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1.1k

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How to convert references ID list in UCSC reference list

gene id name ucsc written 4.0 years ago by Lila M • 890

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974

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What does S1 , L004 , R2 , 001 stand for in HCC###BL_S1_L004_R2_001.fastq?

genome name format sequencing written 5.0 years ago by bshifaw • 50 • updated 5.0 years ago by Ram ♦ 32k

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1.7k

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How to deal with the spaces in the sequence names with biopython?

sequence name space biopython written 5.8 years ago by grayapply2009 • 240 • updated 5.8 years ago by Peter ♦ 5.9k

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1.3k

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How to sort PDB name

pdb python name sort written 6.6 years ago by Jason Lin • 0 • updated 6.6 years ago by David Fredman • 1.1k

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Recent Replies

C: top geo ontology by Ram ♦ 32k
Hello aranyak111! It appears that your post has been cross-posted to another site: https://bioin...
A: Single-cell RNAseq for glia by Pancreas Pratik • 110
Hey @genetics78, The NCBI GEO is usually my go-to for searching for data. I searched `oligoden...
C: Whole Genome Sequencing: Identification of genomic differences by lieven.sterck ♦ 10k
Your question is lacking more detailed info to get meaningful answers. eg. What kind of differenc...
C: how to select features for high dimension data? by pt.taklifi • 60
thank you for your response it was indeed , very helpful for me. I have a question though, in the...
A: nextflow set tuple issue by joe • 0
Thanks Barry for your help. My idea was to keep the next process wait until the running process ...
C: Facing issue while installing Bio::SeqIO module by Ram ♦ 32k
This should have been a replly to 5heikki's comment. I've moved their comment to an answer now, p...
A: Facing issue while installing Bio::SeqIO module by madhujamano • 0
Yes Got it. Thank you.
C: Want to reverse the fasta sequence by GenoMax ♦ 96k
https://www.biostars.org/u/56270/ : Don't forget to follow up on your past threads. If an answe...
C: Want to reverse the fasta sequence by cpad0112 ♦ 15k
use `faRc` from kent utils
C: Want to reverse the fasta sequence by cpad0112 ♦ 15k
Better to use ` seqtk seq -r file.fa` for revcomp.
C: STAR alignment loop segmentation fualt (core dumped) by curious • 500
you could try requesting more memory than you would get by default w/ 19 cores though
C: Data access through python by desouzareis.r • 30
You could download the data via the ftp page https://hgdownload.cse.ucsc.edu/goldenpath/hg38/dat...

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