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how to map NCBI protein IDs to assembly IDs
genome ncbi sequence rna-seq written 12 hours ago by mattmelnicki • 0
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66
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converting taxID to taxonomy
ncbi taxid taxonomy terminal written 4 days ago by Fardokht • 20 • updated 4 days ago by genomax ♦ 78k
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69
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Customise blastn to exclude key words
ncbi blast blastn linux written 7 days ago by ando.kelli • 40 • updated 7 days ago by genomax ♦ 78k
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107
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protein databases with GI numbers
ncbi database nr protein blastp written 4 weeks ago by yp19 • 50 • updated 7 days ago by Elisabeth Gasteiger • 1.7k
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Catching error "QueryKey value not found in link output" when fetching taxonomy from NCBI
ncbi R efetch bash error_handling written 7 days ago by Fardokht • 20 • updated 7 days ago by Asaf ♦ 7.0k
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69
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Using Entrez to find the taxonomy for an accession number
ncbi accession_number taxonomy entrez written 12 days ago by Fardokht • 20 • updated 11 days ago by vkkodali • 1.7k
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145
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Bulk Retrieval of Gene Sequences using Protein IDs (NCBI)
ncbi data retrival written 17 days ago by venura • 10 • updated 17 days ago by genomax ♦ 78k
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Issues in running command line blastn with -task blastn-short option
ncbi blast written 19 days ago by Louis Kok • 20
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66
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How to liftover SNPs between different assemblies from different databases?
ncbi ensembl snp liftover assembly written 20 days ago by rimgubaev • 180
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Manipulate refseq database
ncbi nt database refseq written 4 weeks ago by anasofiamoreira94 • 70 • updated 20 days ago by Biostar ♦♦ 20
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75
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esearch discrepancies using bash commands vs direct esearch command line
ncbi entrezdirect esearch written 20 days ago by frcamacho • 160
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75
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1
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NCBI Blastn+ command line - How do I limit to a specific TSA project or organism?
ncbi assembly written 20 days ago by elesbb91 • 0 • updated 20 days ago by genomax ♦ 78k
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getting information from NCBI genebank files
ncbi assembly genebank annotation written 21 days ago by saadleeshehreen • 70
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Biopython HTTPError when Fetching more than 1400 Entries from NCBI
ncbi biopython eutils written 24 days ago by tobias.kraft-blank • 0
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How to extend clone sequence
ncbi dna written 25 days ago by isoBA • 0 • updated 25 days ago by zx8754 ♦ 9.0k
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TaxID to RefSeq
genome ncbi written 26 days ago by zuzanna.karwowska • 20
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How to gather information about all the available genomes for a specific taxon and environment
genome ncbi metadata written 27 days ago by sandragodinhosilva • 0
2
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141
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1
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Downloading assemblies with description from NCBI with edirect
ncbi assembly entrez direct written 4 weeks ago by agata • 0
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181
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BLAST Database error: Error pre-fetching sequence data
software error assembly blast ncbi written 4 weeks ago by elesbb91 • 0
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134
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Determine NCBI Nucleotide source of .fasta amino acid file
fasta ncbi nucleotide written 5 weeks ago by LRStar • 190 • updated 4 weeks ago by genomax ♦ 78k
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87
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How to obtain an annotation for the list of NCBI's Gene ID?
ncbi annotation geneid written 4 weeks ago by rimgubaev • 180
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Is it possible to download nr db from NCBI's cloud ?
ncbi genes nr written 5 weeks ago by K.Gee • 20 • updated 5 weeks ago by genomax ♦ 78k
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How to download fasta files of a particular genus bacteria available in NCBI?
ncbi written 6 weeks ago by sart • 10 • updated 6 weeks ago by Asaf ♦ 7.0k
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105
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How to customize the attibutes of geo datasets?
ncbi geo written 6 weeks ago by changxu.fan • 30 • updated 6 weeks ago by Strand NGS • 20
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172
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Update list of asseccion numbers
ncbi python biopython genbank accession number written 3 months ago by hazirliver • 10 • updated 6 weeks ago by Biostar ♦♦ 20
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NCBI vs Liftover vs ENSEMBL for Assembly Conversion for SNP data (GRCh37 to GRCh38)
ncbi assembly snp liftover ensembl written 3 months ago by sarvism • 0 • updated 6 weeks ago by Biostar ♦♦ 20
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105
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Get nucleotide sequence from protein refseq
ncbi python refseq biopython protein written 6 weeks ago by cindyfang70 • 0
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1
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105
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1
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efetch sra suddenly stopping
ncbi sra fastq esearch efetch written 7 weeks ago by barry • 0 • updated 7 weeks ago by ATpoint ♦ 29k
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172
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Mapping many GI numbers returned from ESearch to Accessions from nr.gz (non-redundant NCBI protein DB)
ncbi esearch written 11 weeks ago by protein_guru • 0 • updated 7 weeks ago by Biostar ♦♦ 20
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How to get a list of snp associated with any known cancer from NCBI with chromosomal locations?
ncbi circulargenome circos snp cancer written 3 months ago by mrj • 20 • updated 9 weeks ago by Ibrahim Tanyalcin • 1.0k
<prev • 833 results • page 1 of 28 • next >
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