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Tutorial: NCBI submissions: SRA and TSA
ncbi sra tsa tutorial rna-seq written 14 hours ago by saraoppenheim • 40
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87
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1
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How do I extract taxonomy/organism from NCBI .gb files?
ncbi written 1 day ago by Ming • 0 • updated 23 hours ago by Sej Modha ♦ 3.8k
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How to Determine Which Bacterial Assembly to Use from NCBI database?
ncbi assembly written 2 days ago by zuhaibzulfiqarahmed • 0
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69
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NCBI analyze dataset
ncbi R geoquery biobase written 4 days ago by lvitale • 0
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60
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How to query taxonomy ID using protein accession ID in NCBI or Uniprot?
ncbi taxonomy uniprot written 7 days ago by johnnytam100 • 90
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SRA archive metadata
ncbi sra sra-toolkit written 14 days ago by tim.ivanov.92 • 0 • updated 13 days ago by vkkodali • 450
1
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1
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Complete list of rs ids and thier corresponding sequence for the human genome
genome ncbi snp written 16 days ago by Uday Rangaswamy • 60 • updated 16 days ago by finswimmer ♦ 7.0k
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134
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Is there any written script to extract Organism name,SRA information and Assembly from accession id?
ncbi assembly extractinformation written 22 days ago by saadleeshehreen • 40
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146
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1
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How do I loop over a list of gene symbols to extract sequences from NCBI?
ncbi eutils bash written 22 days ago by MAPK • 1.3k
2
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1
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119
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1
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pathogenic bacteria in the SRA database
ncbi sra bacteria pathogen written 29 days ago by shira.zaltsman • 10 • updated 23 days ago by vkkodali • 450
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136
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1
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Strange esearch behavior
ncbi esearch eutils written 25 days ago by RamRS ♦ 19k
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1.9k
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Convert Ncbi Species Names To Kegg Species Names
ncbi format mapping kegg written 7.1 years ago by User 2385 • 0 • updated 25 days ago by michau • 10
2
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1
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154
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1
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How to download genome assemblies from NCBI with a list of GCA identifiers?
ncbi assembly data download written 29 days ago by O.rka • 70 • updated 26 days ago by vkkodali • 450
2
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1
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193
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1
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Entrez Direct to retrieve Protein and Coding sequences from NCBI accesion
ncbi retrieve protein entrez coding sequences written 5 weeks ago by dllopezr • 40 • updated 26 days ago by vkkodali • 450
2
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Exclude Replaced or Discontinued UIDs from an reutils.esearch operation
ncbi esearch eutils written 26 days ago by RamRS ♦ 19k • updated 26 days ago by genomax ♦ 58k
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6 follow
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How to use Biopython for fetching metadata of NCBI/GenBank/RefSeq assembly identifiers?
ncbi assembly entrez biopython fetch written 27 days ago by O.rka • 70 • updated 27 days ago by arup • 660
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125
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Forum: Strategies for group submisions to SRA (BioProject)
ncbi sra next-gen forum core facility archive written 29 days ago by A. Domingues • 1.6k
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1
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139
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is there a faster way to download large sequencing data from NCBI?
ncbi ngs datadownload written 4 weeks ago by jaqx008 • 40 • updated 4 weeks ago by Philipp Bayer ♦ 5.7k
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175
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5 follow
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How to reformat (i.e. to clean) NCBI .fasta archives into a singleline .fasta with only the unique identifier before each seqeunce?
ncbi fasta linux bash written 5 weeks ago by johnnytam100 • 90 • updated 4 weeks ago by Chirag Parsania • 1.2k
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101
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NCBI Entrez not returning the correct DNA sequence for all entries
ncbi sequence retrieval entrez written 4 weeks ago by ahir29 • 0 • updated 4 weeks ago by piet • 1.6k
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esearch query does not return sorted results from NCBI EDirect
ncbi edirect esearch command-line entrez written 2.8 years ago by ciclistadan • 30 • updated 5 weeks ago by h.mon ♦ 21k
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129
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file_backend.cgi is limiting me to only 2000 entries
ncbi entrez php written 5 weeks ago by grvpanchal • 30
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125
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Blog: Ensembl and NCBI MANE transcript initiative
ncbi gene annotation canonical blog ensembl transcript written 5 weeks ago by Emily_Ensembl ♦ 16k
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130
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1
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tblastn cuts querry even when alligment cut be better if extended
ncbi tblastn blast written 11 weeks ago by john • 70 • updated 5 weeks ago by lieven.sterck • 3.1k
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8 follow
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How To Create A Pssm From Fasta Homologues With Ncbi Blast+ 2.2.23
ncbi pssm blast written 8.1 years ago by Michael Schubert • 6.8k • updated 5 weeks ago by mjavad2012 • 0
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330
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7 follow
1
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Missing sequences in local NT database
ncbi nt blast blastdbcmd written 6 weeks ago by Prakki Rama • 2.2k • updated 6 weeks ago by lieven.sterck • 3.1k
2
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1
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233
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1
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NCBI edirect efetch error
software error ncbi taxonomy written 7 weeks ago by Inquisitive8995 • 40 • updated 7 weeks ago by h.mon ♦ 21k
3
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442
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5 follow
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biopython esearch not giving all children taxIDs
ncbi biopython entrez written 14 months ago by yarmda • 0 • updated 7 weeks ago by tsrmhathesh • 0
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3
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GFF to TBL file conversion for annotation submission
ncbi annotation gff genome written 9 months ago by arsilan324 • 60 • updated 7 weeks ago by Shaun Jackman • 420
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137
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0
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NCBI - Find gene with most exons
gene ncbi exon written 7 weeks ago by cosull3 • 0
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