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Finding the centromere and telomere of cattle genome (Bos Taurus)
ncbi genome cattle centromere chromosome written 2 days ago by Freddy • 20 • updated 2 days ago by antonioggsousa • 250
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53
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Retrieve multiple refseq genomes in seperate fasta files
ncbi genome download refseq written 10 days ago by Biogeek • 400
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Retrieve reference sequence GenBank for mRNA transcript of interest
ncbi mrna refseq genbank written 5 weeks ago by speycast • 0 • updated 10 days ago by Biostar ♦♦ 20
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1
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224
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Database from .gbk files
ncbi database gbk written 19 days ago by graysonford • 0
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75
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Using Biopython Entrez to get protein accession from mRNA accesion
ncbi mrna refseq biopython protein written 13 days ago by speycast • 0 • updated 13 days ago by genomax ♦ 85k
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5 follow
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How do I download NCBI prokaryote Genbank and RefSeq databases as single flat text file?
ncbi database download flat file prokaryote written 17 days ago by Michael • 0 • updated 15 days ago by Mensur Dlakic • 5.8k
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News: New web BLAST default parameters and search limits coming in September 2020
www-blast ncbi news blast written 15 days ago by genomax ♦ 85k
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How can you *consistently* download BioProject IDs from NCBI's BioSample database using Entrez Direct?
entrez direct ncbi xml format written 16 days ago by millere • 0
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112
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Howcomplete STAR annotation with NCBI Genebank
ncbi star rna-seq written 16 days ago by emilie.derisoud • 0
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90
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Changing gene headers in .sqn file for genome upload NCBI
ncbi .sqn unix written 17 days ago by T_18 • 40
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198
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5 follow
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converting taxID to taxonomy
ncbi taxid taxonomy terminal written 4 months ago by Freddy • 20 • updated 19 days ago by SilentGene • 30
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127
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5 follow
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biopython entrez lost connection?
ncbi python taxonomy biopython written 4 weeks ago by flogin • 250
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What is the input file format for Batch Entrez?
ncbi nucleotide batch entrez genbank written 27 days ago by mshelomi • 0
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Error downloading streams from SRA-ncbi when running fastq-dump
ncbi sra fastq-dump rna-seq written 4 weeks ago by Sam_ • 0
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111
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Retrieve RefSeq protein accession from transcript accession
ncbi refseq eutils written 4 weeks ago by speycast • 0 • updated 4 weeks ago by genomax ♦ 85k
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81
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Quality checks for submitted data in SRA & EMBL
ncbi embl fastq qc written 4 weeks ago by DC7 • 20 • updated 4 weeks ago by ATpoint ♦ 36k
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1
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174
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1
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GLIBC error when trying to use sra-toolkit
software error ncbi sra-toolkit written 5 weeks ago by amitfinkelstein • 0 • updated 5 weeks ago by zorbax • 130
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1
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172
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BLAST Database error: No alias or index file found for protein database [nr] in search path [D:\Test_Experiment;D:\Data\NCBI\db;]
ncbi pssm psi-blast snp written 5 weeks ago by Dylan Wang • 30 • updated 5 weeks ago by genomax ♦ 85k
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Get data from SRA with just SAMN IDs
ncbi sra fastq rna-seq written 6 weeks ago by mark.dunning • 210
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makeblastdb error: Error: (803.7) [makeblastdb] Blast-def-line-set.E.seqid.E.local.str Bad char [0xC3] in string at byte 45
makeblastdb ncbi blast written 3.1 years ago by m.rhodes • 40 • updated 6 weeks ago by flyingfinger • 10
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Is there a way to use API to convert taxa-ID to common/scientific name via NCBI?
ncbi api written 6 weeks ago by DNAlias • 0
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5 follow
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BLAST Database error: Error pre-fetching sequence data
software error assembly blast ncbi written 5 months ago by elesbb91 • 20 • updated 6 weeks ago by wangshuo0782 • 0
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101
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Retrieve corresponding GRCh37 assembly chromosome refseq and gene name using specified mNRA transcript
ncbi grch37 refseq genbank transcript written 7 weeks ago by speycast • 0 • updated 7 weeks ago by David Gortler • 20
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139
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Standalone Blast+; Automating searches, Blastn formatting, interpretation
ncbi nucleotide blast sequencing written 7 weeks ago by s.jayne.henderson • 0
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110
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Retrieve exon ranges from E-utils
ncbi etuils exon genbank written 8 weeks ago by speycast • 0 • updated 8 weeks ago by genomax ♦ 85k
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6 follow
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NCBI Protein GI to Genome Accession
ncbi sequence eutils written 5.1 years ago by Sej Modha ♦ 4.7k • updated 9 weeks ago by josev.die • 20
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How to tell a sequence found in NCBI ("Nucleotide") is from Human Reference Genome or not.
ncbi sequence human reference written 9 weeks ago by freeheart.steven • 10 • updated 9 weeks ago by ed.erwin • 0
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NCBI error report
ncbi sra next-gen written 9 weeks ago by ofir.griess • 0
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6 follow
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Retrieve GFF3 file from ncbi
gff3 ncbi efetch written 2.4 years ago by john • 70 • updated 10 weeks ago by rohitsatyam102 • 110
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128
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query coverage parameter in blastn
ncbi blast+ blastn written 11 weeks ago by agata • 10
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