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Using entrez-direct inside a for loop in bash
ncbi bash written 4 days ago by Lille My • 30 • updated 4 days ago by genomax ♦ 63k
7
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1
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90
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1
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SRA from NCBI?
ncbi sra fastq rna-seq written 4 days ago by star • 130
2
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1
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137
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1
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finding the genome of origin of a protein on genbank
ncbi assembly written 6 days ago by Lille My • 30
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1
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117
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JGI databases vs GenBank
ncbi jgi img written 7 days ago by mschmid • 90 • updated 7 days ago by Juke-34 • 2.0k
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Strange behaviour of the NCBI remap API ?
ncbi assembly alignment genome gwas written 9 days ago by f.abbondanza94 • 0
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2
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131
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2
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Aligning two DNA sequences with nBLAST
ncbi igb blast written 12 days ago by sj93 • 10 • updated 11 days ago by pltbiotech_tkarthi • 100
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99
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Can I align two DNA sequences using BLAST from command line?
ncbi genome sequence blast snp written 11 days ago by sj93 • 10 • updated 11 days ago by nsmi8446 • 90
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2
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112
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Convert list of Accession Numbers to Full Taxonomy
ncbi taxonomy accession numbers written 14 days ago by dylan.lawrence • 10 • updated 14 days ago by genomax ♦ 63k
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63
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How to solve the elink error ?
ncbi elink written 18 days ago by saadleeshehreen • 60
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Job: Bioinformatics Scientist, Scientific Data Curator at Computercraft (NCBI/NIH) in Bethesda, MD, USA
ncbi bioinformatics phenotype data job biocuration written 5 weeks ago by jyu • 10
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Job: Medical Genetics Curator, Genetic Counselor at Computercraft (NCBI/NIH) in Bethesda, MD, USA
ncbi curation genetic counselor job biocuration written 5 weeks ago by jyu • 10
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148
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Job: Bioinformatics and Data Visualization Specialist at Computercraft (NCBI/NIH) in Bethesda, MD, USA
ncbi job sequence analysis data visualization written 25 days ago by jyu • 10
4
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1
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122
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1
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What is the fastest way to download all SRA files of a SRA Study?
ncbi sra sequencing rna-seq download written 26 days ago by lokdeep17 • 0 • updated 26 days ago by ATpoint ♦ 14k
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Is there a way to obtain taxonomy IDs of organisms with associated protein sequences?
ncbi bioinformatics blast written 26 days ago by lpragasa • 0 • updated 26 days ago by gb • 600
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105
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1
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Parse NCBI XML sample information into a data frame in R
ncbi R xml written 26 days ago by willnotburn • 40
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137
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0
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NCBI Saccharomyces cerevisiae GENE_INFO has child taxon ID instead of parent.
ncbi taxonomy yeast written 26 days ago by manuel.belmadani • 570
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1
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118
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1
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Change NBCI accession numbers to UNIPROT identifiers
ncbi uniprot written 28 days ago by Darrill • 0
3
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1
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218
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1
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Number of discovered genes in genome does not correspond with published annotation
ncbi genome gff rna-seq annotation written 29 days ago by P16226 • 0 • updated 28 days ago by kashifalikhan007 • 50
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3
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237
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5 follow
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Number of genomes sequences in NCBI
genome ncbi written 5 weeks ago by bwczech • 60 • updated 4 weeks ago by vkkodali • 980
2
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1
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86
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1
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How to efetch specific attributes from BioSamples?
ncbi xml eutils written 5 weeks ago by Arindam Ghosh • 150 • updated 5 weeks ago by Pierre Lindenbaum ♦ 117k
1
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1
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208
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5 follow
1
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Avoid download limit from NCBI entrez with Biopython using API key
ncbi biopython entrez written 5 weeks ago by Shred • 150
3
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1
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167
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1
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How to convert data from NCBI E-utilities.efetch to python data object?
ncbi python written 8 weeks ago by MatthewP • 80
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2
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259
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8 follow
2
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Bulk download of entire BioProject SRA
ncbi sra sratoolkit entrez utilities bioproject written 8 weeks ago by Anand Rao • 210 • updated 7 weeks ago by arup • 870
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1
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What training dataset was used for the NCBI Glimmer web server?
ncbi gene finding glimmer written 4.5 years ago by blrhgeruser1 • 40 • updated 8 weeks ago by ojelizodun • 0
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176
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Trimming sequences based on NCBI contamination screen report
ncbi assembly transcriptome written 8 weeks ago by T_18 • 20
2
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1
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168
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1
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What is the best way to get all human genes(name/UID) ?
gene ncbi written 8 weeks ago by MatthewP • 80
1
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1
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189
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1
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Getting GFF annotation from sequence coordinates.
ncbi python gff gene annotation written 9 weeks ago by jsporter • 60
2
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1
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182
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1
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Batch Retrieval of Conserved Domains from a List of IDs?
ncbi entrez conserved domain written 9 weeks ago by kayrouz.1 • 0 • updated 9 weeks ago by vkkodali • 980
3
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2
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907
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2
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How to download all the parasite protein data from NCBI?
ncbi parasite protein written 2.2 years ago by najibveto • 30 • updated 9 weeks ago by Biostar ♦♦ 20
3
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149
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all by all phylogenetic distances for massive set of ncbi taxon ID's
phylogeny ncbi taxonomy taxon id microbiology written 10 weeks ago by bioguy • 20 • updated 10 weeks ago by i.sudbery ♦ 4.0k
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