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Neighbor Joining algorithm: why n-2?

neighbor-joining phylogenetics evolution written 5 months ago by michael • 0 • updated 5 months ago by kloetzl • 960

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APE (R) package NJ tree - what's the scale?

phylogeny R neighbor-joining ape written 4.2 years ago by biogirl • 140 • updated 4.2 years ago by David W ♦ 4.7k

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Recent Replies

A: collapsing GFF coordinates with common start OR stop by h.mon ♦ 16k
First ensure your GFF is compliant with the specifications (see my comment above), then you can u...
C: Small RNAseq data with untrimmed reads left after trimming process by MAPK • 1.2k
Thanks, I checked those reads and there is 100% match with the genome. Any explanation for that?
C: Small RNAseq data with untrimmed reads left after trimming process by MAPK • 1.2k
As always, appreciate you answering my questions.
C: collapsing GFF coordinates with common start OR stop by h.mon ♦ 16k
> chr4 fBS CDS 5000 1000 - . PfamID1 > > chr4 fBS CDS 4000 1000 - . PfamID1 > > c...
A: Small RNAseq data with untrimmed reads left after trimming process by h.mon ♦ 16k
> Could it be possible for those reads to be pre-trimmed or come without 3' adapter justifying...
C: Small RNAseq data with untrimmed reads left after trimming process by genomax ♦ 52k
With small RNA seq if you are not able to identify the right adapter in your reads then it is lik...
C: Problem with Bedtools by alvarocentron91 • 0
Ok I want to know how many reads from the .bam overlap with each of the positions I have on my .g...
C: Problem with Bedtools by h.mon ♦ 16k
Regarding the error message posted as an image (which should be avoided, it is better to copy / p...
C: ngs vs microarray by Kevin Blighe ♦ 24k
It should be pointed out that NGS has pitfalls that have prevented its enrollment in clinical set...
C: Problem with Bedtools by h.mon ♦ 16k
bam files do not have features, they have reads / sequences mapped. > I get results but not ...
C: Quality Check Your Samples and Biological Replicates by h.mon ♦ 16k
Please describe your analysis in more detail: did you assemble all samples together? What is the ...
C: Problem with Bedtools by alvarocentron91 • 0
But that line generates just the opposite of what I want

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