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News: The Biostar Handbook. A bioinformatics e-book for beginners.
training handbook
updated 12 weeks ago by 2.6k • written 7.4 years ago by 100k
0
votes
0
replies
161
views
News: Online course: Meta-analysis in R
Meta-Analysis Statistics R
updated 1 day ago by 43k • written 1 day ago by ★ 2.5k
0
votes
0
replies
162
views
News: Course - Agent-Based Modelling Using NetLogo - University of Lodz, Poland
Netlogo Individual-Based-Models Agent-Based-Models
updated 1 day ago by 43k • written 2 days ago by ★ 2.5k
0
votes
0
replies
158
views
News: Final Call - Bioinformatics Pipeline Development with Nextflow (May 27-29, 2024)
workshop RNA-seq nextflow DNA-seq
updated 3 days ago by 43k • written 3 days ago by 11k
0
votes
0
replies
132
views
News: Deadline Approaching: PETs for Public Health Challenge
privacy public-health-challenge
updated 4 days ago by 43k • written 4 days ago by ▴ 380
0
votes
0
replies
165
views
News: Online course: Network Analysis in R
NetworkAnalyis R
6 days ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
173
views
News: Online course: Meta-analysis in R
Meta-Analysis R
updated 8 days ago by 43k • written 8 days ago by ★ 2.5k
1
vote
0
replies
120
views
News: Online Live Course: Introduction to Machine Learning in R
Rstats TScourses Rlang Rproject
updated 8 days ago by 43k • written 8 days ago by ▴ 70
2
votes
0
replies
113
views
News: Online Course Generalised Additive Mixed Models (GAMM): modelling space-time correlation structures
GAMM Rlang Rstats Rproject
updated 8 days ago by 43k • written 8 days ago by ▴ 70
2
votes
0
replies
111
views
News: Online Course Introduction to Network Analysis and Modelling
Python Network-Analysis
updated 8 days ago by 43k • written 9 days ago by ▴ 70
2
votes
0
replies
105
views
News: Course Functional Programming with R
Rstats TScourses Rproject KeepLearning Rlang
9 days ago by Transmitting Science communication ▴ 70
12
votes
2
replies
425
views
News: 8th Berlin Summer School in NGS Data Analysis (June 10-14, 2024) - already half booked
Workshop RNA-Seq DNA-Seq Illumina
10 days ago by David Langenberger 11k
2
votes
0
replies
107
views
News: Online course: Genome Annotation
Genome-Assembly RNA-seq Genome-Annotation
updated 10 days ago by 43k • written 10 days ago by ★ 2.5k
0
votes
0
replies
108
views
News: Online course: Multivariate Data Analysis with R and vegan
Multivariate-Statistics vegan R
updated 11 days ago by 43k • written 12 days ago by ★ 2.5k
1
vote
0
replies
162
views
News: Landscape Genomics course in Switzerland
LFMM Landscape-Genomics Sambada R Local-Adaptation
updated 11 days ago by 43k • written 14 days ago by ★ 2.5k
8
votes
2
replies
754
views
News: FINAL CALL - Single-Cell RNA-Seq Data Analysis: A Practical Introduction (May 6-8, 2024 in Berlin)
single-cell sequencing
15 days ago by David Langenberger 11k
0
votes
0
replies
131
views
News: Online course: Food Traceability Using Genomic Tools
Nanopore Genomic-Tools Illumina Food-Traceability
updated 16 days ago by 43k • written 16 days ago by ★ 2.5k
0
votes
0
replies
137
views
News: Online course: Eukaryotic Metabarcoding
Metabarcoding Biodiversity R eDNA
18 days ago by carlopecoraro2 ★ 2.5k
3
votes
2
replies
542
views
News: Announcement: Research Topic "Mechanistic, Machine Learning and Hybrid Models of the 'Other' Endocrine Regulatory Systems in Health and Disease", Vol…
mathematical-modelling endocrinology ML systems-biology machine-learning
21 days ago by Johannes W. Dietrich • 0
0
votes
0
replies
188
views
News: Online course: Reproducibility in Bioinformatics
Singularity Version-Control Docker Containers
updated 22 days ago by 43k • written 22 days ago by ★ 2.5k
0
votes
0
replies
156
views
News: Online course: Analysis of Prokaryotic Pangenomes (Last call)
Prokaryotic Bacterial-Genomics Pangenomics
updated 22 days ago by 43k • written 22 days ago by ★ 2.5k
0
votes
0
replies
151
views
News: Online course: Introduction to GWAS
GWAS Imputation StatisticalPower
27 days ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
152
views
News: Online course: Adaptation Genomics
StructuralVariants Selection AdaptationGenomics PopulationStructure
4 weeks ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
144
views
News: Online course: Analysis of Prokaryotic Pangenomes
BacterialGenomics Pangenomics
4 weeks ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
221
views
News: Online course on Genome Assembly and Annotation (1 seat left)
Galaxy GenomeAssembly GenomeAnnotation
5 weeks ago by carlopecoraro2 ★ 2.5k
1
vote
0
replies
159
views
News: NCBI's ClinVar now accepting somatic variation data
variation NCBI somatic-variants ClinVar
5 weeks ago by PeterC_NCBI ▴ 410
1
vote
1
reply
261
views
News: EMBL Course Hands-on course for sample preparation and data analysis in proteomics
EMBLProteomics
updated 5 weeks ago by • 0 • written 10 weeks ago by ▴ 10
1
vote
0
replies
181
views
News: Learn how to create robust bioinformatics pipelines for reproducible and comparable NGS analyses
nextflow pipeline workshop
5 weeks ago by David Langenberger 11k
0
votes
0
replies
144
views
News: Online course: Genome Assembly and Annotation - 3 seats left
Genome-Assembly Galaxy Genome-Annotation
updated 5 weeks ago by 43k • written 5 weeks ago by ★ 2.5k
0
votes
0
replies
142
views
News: Call for abstract: Quest for Orthologs meeting in Montreal
conference phylogeny comparativegenomics orthology evolution
5 weeks ago by sina.majidian ▴ 20
1
vote
0
replies
148
views
News: shournal: A Tool for Bioinformaticians to Boost Research Reproducibility
reproducability terminal bash
6 weeks ago by David Langenberger 11k
1
vote
1
reply
184
views
News: Integrated Genome Browser (IGB) Office Hours
Integrated-Genome-Browser IGB
updated 6 weeks ago by 43k • written 6 weeks ago by • 0
0
votes
0
replies
175
views
News: Online course: Network Analysis in Systems Biology with R/Bioconductor
R RNA-seq Network-Analysis Bioconductor Systems-Biology
updated 6 weeks ago by 43k • written 6 weeks ago by ★ 2.5k
0
votes
0
replies
206
views
News: The 2024 Canadian Bioinformatics Workshops are here!
CBW workshop training
7 weeks ago by bioinformatics.ca • 0
0
votes
0
replies
165
views
News: Live online course Data Manipulation with R Tidyverse, 3 and 5 of April
R manipulation tidyverse data
7 weeks ago by Sole • 0
0
votes
0
replies
184
views
News: Online course: Reproducibility in Bioinformatics
Docker Singularity WorkflowManagementSystems Reproducibility
7 weeks ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
238
views
News: Online course: Genome Assembly Using Oxford Nanopore Sequencing - 4 seats remaining
GenomeAssembly Nanopore longreads
8 weeks ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
216
views
News: Webinar about scRNA-seq cell type prediction
scRNAseq
updated 8 weeks ago by 141k • written 8 weeks ago by • 0
0
votes
0
replies
227
views
News: Online course: Spatial Omics in R/Bioconductor
R Spatial-Omics Bioconductor tidyverse transcriptomics
updated 8 weeks ago by 43k • written 8 weeks ago by ★ 2.5k
0
votes
0
replies
196
views
News: Online course: Model-Based Demographic Inference from Population Genomics
Demographic-Inference Population-Genomics Demographic-Models
updated 8 weeks ago by 43k • written 8 weeks ago by ★ 2.5k
0
votes
0
replies
162
views
News: Online course: R/Bioconductor for Mass Spectrometry and Proteomics
R Proteomics Bioconductor Mass-Spectrometry
updated 9 weeks ago by 43k • written 9 weeks ago by ★ 2.5k
0
votes
0
replies
174
views
News: Virtual Workshops with the UConn Computational Biology Core
Workshop genomics
updated 9 weeks ago by 141k • written 9 weeks ago by ▴ 10
0
votes
0
replies
168
views
News: NGS Data Analysis Courses for Absolute Beginners
NGS DNAseq RNAseq singlecellsequencing DataAnalysis
9 weeks ago by David Langenberger 11k
0
votes
0
replies
185
views
News: Online course: Genome Assembly and Annotation
Annotation Genome-Assembly Nanopore Pacbio
updated 9 weeks ago by 43k • written 9 weeks ago by ★ 2.5k
0
votes
0
replies
162
views
News: Online course: Computation Tumor Evolution
R Cancer-Genomics Tumor-Evolution Genomics
updated 10 weeks ago by 43k • written 10 weeks ago by ★ 2.5k
0
votes
0
replies
162
views
News: Course live online Intro Bayesian Analyses, March 4-8, 2024
R python bayesian
10 weeks ago by Sole • 0
0
votes
1
reply
926
views
News: FINAL CALL: RNA-Seq Data Analysis Workshop (March 11 - 14, 2024 in Berlin, Germany)
NGS RNA-Seq Workshop
10 weeks ago by David Langenberger 11k
0
votes
0
replies
209
views
News: Online course : Meta-Analysis in R
R Meta-Analysis Statistics
updated 10 weeks ago by 43k • written 10 weeks ago by ★ 2.5k
1
vote
0
replies
180
views
News: Cellosaurus release 48 is available
cell-line biocuration cellosaurus knowledgebase
11 weeks ago by Amos Bairoch ▴ 120
0
votes
0
replies
222
views
News: Online course: Genome Assembly Using Oxford Nanopore Sequencing
Genome-Assembly Nanopore
updated 11 weeks ago by 43k • written 11 weeks ago by ★ 2.5k
1,000 results • Page 1 of 20
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Comment: Installing/switching between versions of R/Rstudio/Bioconductor on personal mach
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Comment: How can I retrieve wheat lysine non-acetylated sequences from the UniProt databa
Answer: How can I retrieve wheat lysine non-acetylated sequences from the UniProt databa
The majority of the sequences in Trinity ID do not start from start codons. Can the sequences still be used for primer design and validation?
Answer: Cellranger count error: Input FASTQ file ended prematurely
Answer: RNA seq differential expression analysis
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Comment: Calculate Radius of Gyration [python 3] by ndm1096 • 0
Hello Franco. I am very much new with bioinformatics but I have been tasked with studying the radius of gyration of a timeseries of a prote…
Comment: Installing/switching between versions of R/Rstudio/Bioconductor on personal mach by BioinfGuru ★ 1.7k
That makes a lot more sense. Thank you.
Answer: Removing Illumina microarray probes with no expression HumanHT-12v4 by Gordon Smyth ★ 7.0k
Type ``` help("read.idat") ``` and read the example at the bottom of the page, which shows you how to set the `other$Detection` component o…
Comment: Free/open source 23andme-like analysis by swbarnes2 14k
Accurately assessing a few QC metrics is trivially easy. Assessing the significance of variants in a clinically responsible way is really…
Comment: Cellranger count error: Input FASTQ file ended prematurely by swbarnes2 14k
If _1 and _2 really are the same library, you should rename the fastqs, or make symlinks, such that they have the same sample name, but dif…
Comment: Cellranger count error: Input FASTQ file ended prematurely by ATpoint 81k
Just delete the index read files. They just take up space and will never be used.
Comment: Adding CB tag to bam file by swbarnes2 14k
Yes. Why wouldn't you use, say, AddOrReplaceReadsGroups?
Comment: Ciriquant not configuring hisat2 indexed files by Atul K. • 0
Thank you. Decreased the threads to 2 (changed the threads: 2 in the config file; but it was somehow using 4). It did run for sometime but …
Answer: GTF file from Stringtie to R Studio for either Ballgown or DESeq2 by Ram 43k
See this section on how to use tximport to import StringTie output for DESeq2 processing: https://bioconductor.org/packages/devel/bioc/vign…
Comment: how to find genes that are significantly expressed in brain cortex samples by Ram 43k
Can you explain the normalization or give me a link that describes it, please? Comparison across samples will always be caveated as RNA-seq…
Comment: Installing/switching between versions of R/Rstudio/Bioconductor on personal mach by Ram 43k
Sorry, I see how harsh I come across. It's not good practice to use multiple versions of R in the same project. I can understand legacy pro…
Answer: MEGA Analysis Issue on High-Performance Computer by Mensur Dlakic ★ 27k
> I have ensured that I am using the latest version of MEGA and that other applications are not consuming excessive resources during the an…
Comment: Installing/switching between versions of R/Rstudio/Bioconductor on personal mach by BioinfGuru ★ 1.7k
Some of us are still learning and fall foul to knowledge limitation fairly regularly. Luckily we have people to put us in our place.
Answer: Running blastp with BLAST+ 2.15.0 against custom database; need to identify hits by GenoMax 141k
> I know that I should be able to collect protein sequences from the blastp results into a file, but I do not know how to do this. You c…
Comment: how to find genes that are significantly expressed in brain cortex samples by rheab1230 ▴ 140
I got the normalized gene count from gtex portal. they use inverse quantile normalization
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