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News: The Biostar Handbook. A bioinformatics e-book for beginners.
training tutorial News handbook
updated 4 months ago by 960 • written 5.7 years ago by 94k
0
votes
0
replies
16
views
News: 2023 EMBL Courses and Conferences
EMBL EMBLMalaria EESImaging
12 hours ago by EMBL Events • 0
0
votes
0
replies
66
views
News: Online training -Getting the most out of R
R Science analysis Data
1 day ago by carlopecoraro2 ★ 2.1k
0
votes
0
replies
72
views
News: Online training - Cancer Genomics in R
Bioinformatics Genomics Cancer R
1 day ago by carlopecoraro2 ★ 2.1k
0
votes
0
replies
73
views
News: Online training - DNA methylation in plants and animals
OxfordNanopore DNAMethylation BSseq longreads PacBio
3 days ago by carlopecoraro2 ★ 2.1k
0
votes
0
replies
115
views
News: 3rd edition of the Analysis of RNA sequencing data with R/Bioconductor course.
RNAseq Bioconductor R
21 days ago by carlopecoraro2 ★ 2.1k
4
votes
1
reply
1.9k
views
News: 2014 ISCB Wikipedia Article Competition announcement
ISCB competition Wikipedia
written 8.0 years ago by ★ 2.0k
1
vote
2
replies
236
views
News: Online training - Introduction to Nextflow
Bionfirmatics Pipeline Workflow Netflow
3 days ago by carlopecoraro2 ★ 2.1k
4
votes
1
reply
191
views
News: Online Course - A Practical Introduction to NGS Data Analysis (September 26-28, 2022)
workshop ngs data-analysis
updated 28 days ago by 36k • written 4 weeks ago by 9.8k
0
votes
0
replies
192
views
News: Final Call! Tomorrow (7/8) is the Deadline for Phase 1 submissions of the NCTR Indel Calling from Oncopanel Sequencing Data Challenge!
oncopanel indelcalling bioinformatics
4 weeks ago by sarah_p ▴ 10
0
votes
0
replies
143
views
News: Automate your NGS data analyses and create reproducible/scalable pipelines with NextFlow
pipeline Nextflow automation
5 weeks ago by David Langenberger 9.8k
0
votes
1
reply
495
views
News: Hands-On RNA-Seq Data Analysis Workshop in Leipzig, Germany (October 25-28, 2022)
RNA-Seq Transcriptomics NGS Workshop
5 weeks ago by David Langenberger 9.8k
0
votes
3
replies
551
views
News: Less Than One Month Remaining until the Submission Deadline for Phase 1 of the NCTR Indel Calling from Oncopanel Sequencing Data Challenge!
oncopanel indelcalling bioinformatics
5 weeks ago by sarah_p ▴ 10
0
votes
0
replies
132
views
News: EBI Competency Hub Supporting competency-based training and professional development.
ebi carreer
6 weeks ago by Pierre Lindenbaum 147k
0
votes
0
replies
143
views
News: Introduction to Statistics in R for biologists
tydeverse R Statistics
6 weeks ago by carlopecoraro2 ★ 2.1k
1
vote
0
replies
140
views
News: Data analysis with the Tidyverse in July (18th-21st).
Visualization R Tidyverse data-analysis
updated 28 days ago by 36k • written 6 weeks ago by ★ 2.1k
1
vote
0
replies
120
views
News: Use your standard DNA variant caller for SNP calling in Bisulfite-Seq data
bisulfite BS-Seq methylation
6 weeks ago by David Langenberger 9.8k
0
votes
0
replies
136
views
News: online training - Data Visualization with Python
Python Data-Visualization
updated 28 days ago by 36k • written 6 weeks ago by ★ 2.1k
0
votes
0
replies
143
views
News: Cellosaurus release 42 is available
line cell biocuration knowledgebase database
6 weeks ago by Amos Bairoch ▴ 110
0
votes
0
replies
145
views
News: Online course- Reproducibility in Bioinformatics - 11-13 July
Docker Reproducibility Bioinformatics
6 weeks ago by carlopecoraro2 ★ 2.1k
0
votes
0
replies
186
views
News: Online statistics courses
R statistics
9 weeks ago by carlopecoraro2 ★ 2.1k
0
votes
1
reply
219
views
News: API for accessing SARS-COV-2 genomic data
rpackage sars genomics api covid
updated 9 weeks ago by 119k • written 9 weeks ago by • 0
2
votes
0
replies
174
views
News: UniProt: Annotation of biologically relevant ligands using ChEBI
binding protein site metal uniprot chebi
9 weeks ago by Elisabeth Gasteiger ★ 2.1k
3
votes
0
replies
202
views
News: Tutorial on SemiBin (metagenonomics binning tool). June 14 - online
metagenomics binning
updated 10 weeks ago by 119k • written 10 weeks ago by ▴ 60
0
votes
0
replies
127
views
News: Nanopore direct RNA Sequencing - online course
Sequencing direct Nanopore RNA
11 weeks ago by carlopecoraro2 ★ 2.1k
0
votes
0
replies
125
views
News: ONLINE COURSE - LINEAR MIXED MODELS IN R - September 26th-30th
Models Mixed R
11 weeks ago by carlopecoraro2 ★ 2.1k
7
votes
1
reply
305
views
News: NGSymposium - Conference in Computational Biology, 23-24.09
ML statistics conference ngschool
11 weeks ago by kzkedzierska ▴ 290
0
votes
0
replies
149
views
News: ONLINE course "Population genomic inference from low-coverage whole-genome sequencing data"
lcWGS Genomics Population
12 weeks ago by carlopecoraro2 ★ 2.1k
0
votes
0
replies
169
views
News: Online course - Metabarcoding in microbial Ecology
Ecology Metabarcoding Qiime2 Bioinformatics Microbial
3 months ago by carlopecoraro2 ★ 2.1k
3
votes
1
reply
242
views
News: Free web seminars related to small non-coding RNA bioinformatics
eu microRNA coding non club bioinformatics RNA small
3 months ago by laurent.guyon ▴ 60
0
votes
0
replies
159
views
News: ONLINE COURSE - RADseq data analysis using Stacks
Phylogenomics Population RADseq Genomics Stacks
11 weeks ago by carlopecoraro2 ★ 2.1k
0
votes
0
replies
145
views
News: Online course - Developing R/Bioconductor packages for genomics
develptment Bioconductor R Bioinformatics packages
3 months ago by carlopecoraro2 ★ 2.1k
1
vote
0
replies
256
views
News: Phase 1 of the NCTR Indel Calling from Oncopanel Sequencing Data Challenge is now live!
indelcalling oncopanel bioinformatics
3 months ago by sarah_p ▴ 10
0
votes
2
replies
354
views
News: ClusteredNR NCBI BLAST database provides faster searches and more informative BLAST results
NCBI BLAST
3 months ago by PeterC_NCBI ▴ 100
0
votes
0
replies
95
views
News: NCBI poster at Bio-IT World on the new cloud BLAST tool, ElasticBLAST
NCBI BLAST ElasticBLAST
3 months ago by PeterC_NCBI ▴ 100
1
vote
0
replies
163
views
News: DATA ANALYSIS WITH THE TIDYVERSE in July (18th-21st).
tidyverse data R analysis
3 months ago by carlopecoraro2 ★ 2.1k
0
votes
0
replies
234
views
News: Introduction to Nextflow course
Nextflow
3 months ago by carlopecoraro2 ★ 2.1k
0
votes
0
replies
178
views
News: Online Course - A Practical Introduction to NGS Data Analysis (May 16-18, 2022)
NGS RNA DNA Workshop
3 months ago by David Langenberger 9.8k
6
votes
0
replies
214
views
News: NGSchool2022: Machine Learning in Computational Biology
summer machine learning school ngschool ML statistics
3 months ago by kzkedzierska ▴ 290
0
votes
1
reply
210
views
News: Introduction to Deep Learning course
DeepLearning MachineLearning bigdata
updated 3 months ago by 21k • written 3 months ago by ★ 2.1k
2
votes
3
replies
527
views
News: Want to automate your NGS analyses and create reproducible/scalable pipelines? Join our hands-on Nextflow workshop!
nextflow NGS pipeline
3 months ago by David Langenberger 9.8k
0
votes
0
replies
623
views
News: Pre-Register for the NCTR Indel Calling from Oncopanel Sequencing Data Challenge with FDA’s National Center for Toxicological Research (NCTR) and pre…
indelcalling bioinformatics oncopanel
3 months ago by sarah_p ▴ 10
0
votes
0
replies
154
views
News: Virtual Genome Assembly Workshop : May 16-19, 2022
assembly Genome Workshop
3 months ago by singh.vijender ▴ 50
1
vote
0
replies
165
views
News: Data visualization in Python course
Data Visualization Python
3 months ago by carlopecoraro2 ★ 2.1k
0
votes
0
replies
141
views
News: Landscape Genomics in R course
LandscapeGenomics
4 months ago by carlopecoraro2 ★ 2.1k
0
votes
0
replies
162
views
News: Gene Set Enrichment Analysis in R workshop
GSE
4 months ago by carlopecoraro2 ★ 2.1k
0
votes
0
replies
146
views
News: Conservation Genomics Workshop
ConservationGenomics
4 months ago by carlopecoraro2 ★ 2.1k
0
votes
0
replies
161
views
News: A webinar about Harmony batch correction, by its author
scrna-seq single-cell rna-seq
4 months ago by Jennifer Pham ▴ 450
0
votes
1
reply
2.0k
views
News: Nature Index: Novogene is teaming up with laboratories worldwide for life sciences and human health research
Nature NGS Sequencing Bioinformatics
updated 4 months ago by 13k • written 4 months ago by ▴ 160
0
votes
1
reply
641
views
News: ::FINAL CALL:: Online Course | A Practical Introduction to NGS Data Analysis | March 30 - April 1, 2022
DNA-Seq RNA-Seq Workshop
4 months ago by David Langenberger 9.8k
1,000 results • Page 1 of 20
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Comment: Why isn't GWAS used in oncology?
Plink : Variant names are limited to 16000 characters
Answer: Trouble Running MrBayes with GPU(s)
Gene Set Enrichment Analysis
Comment: Help with clumpify.sh
Answer: Help with clumpify.sh
Answer: Help with clumpify.sh
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Recent Replies
Answer: High proportion of non-biallelic SNPs in dbSNP 155 vs 144 by chrchang523 9.5k
This is… exactly what you’d expect as more and more people get sequenced?
Comment: I don't find trimmomatic.jar file by Hayler Edu • 0
Helloooo thank you for the help to resolve the error
Answer: ViReMa not working after adapter trimming by berelly • 0
The problem was over-trimming, just needed to add an "X" to the end of my adapter sequence in the cutadapt command so that adapters were on…
Comment: How can I identify common variants in siblings with same disorder after joint ca by Pierre Lindenbaum 147k
eg. : https://www.biostars.org/p/450129/
Comment: Trying to find file tutorial_8017 for GATK tutorial from the Broad Institute by Ram 36k
Turns out that the moderate button is available to moderators only. This change came into effect when the website upgraded to a new version…
Comment: Trouble Running MrBayes with GPU(s) by rosslindsey1 • 0
Hi Mensur! Thank you for your response and helpful tips. Our cluster is currently undergoing its annual maintenance. As soon as it is back …
Comment: soapdenovo2 installation by Ram 36k
Use a package manager such as conda - it will relieve you of these make and config errors.
Answer: High proportion of non-biallelic SNPs in dbSNP 155 vs 144 by LChart ▴ 430
I can confirm that the marginal proportion of multi-allelic SNVs are: 141: 1.9% 151: 6.8% Current: 14.5% Raw (marginal) counts are: ``` …
Answer: Not producing sam file in hisat2 by Nemo • 0
I found what was the problem. I just post it here if anybody faces with the same problem later maybe it helps. I had underscore in the sam …
Comment: CIBERSORT deconvolution advice by Riley.Risteen • 0
I know this comment was from a while ago but how did you manage to run your large reference on docker? I have been trying to get it to run …
Comment: Is the promoter part of whole of gene in the UCSC database? by Pierre Lindenbaum 147k
(deleted) I was thinking about transcription.
Answer: Is the promoter part of whole of gene in the UCSC database? by i.sudbery 15k
You need to survey upstream of the gene. Generally the promoter is not included in the defination of the gene, which usually runs from the …
Comment: Help with clumpify.sh by tamu.anand ▴ 10
Thanks Brian, @genomax and @atpoint
Comment: Is the promoter part of whole of gene in the UCSC database? by i.sudbery 15k
I think you mean the promoter is not an element of an RNA?
Comment: Accessing gene names from an Affymetrix GeneFeatureSet by Bryan • 0
Thanks - but my issue is I can't seem to find any information about the actual probes used in this dataset. Essentially I just have express…
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