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News: Course - Analysis of PROKARYOTIC PANGENOMES
Genomics Pangenomes
updated 3 months ago by 39k • written 3 months ago by ★ 2.3k
5
votes
3
replies
505
views
News: March 13-16: Virtual Nextflow and nf-core training event in 5 languages
nf-core pipeline Nextflow
updated 11 weeks ago by ▴ 230 • written 3 months ago by 3.7k
0
votes
1
reply
205
views
News: Courses in March. -still a few seats available
Bioconductor Genomics R
updated 3 months ago by 39k • written 3 months ago by ★ 2.3k
0
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0
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220
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News: course - Next steps in applied Bayesian regression modeling
Statistics RegressionModeling Bayesian R
3 months ago by carlopecoraro2 ★ 2.3k
0
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0
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291
views
News: Introduction to GWAS course in June
GWAS R
updated 3 months ago by 39k • written 3 months ago by ★ 2.3k
0
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0
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371
views
News: Introduction to GWAS course (6th edition) - June, 5th-8th
GWAS R
updated 4 months ago by 39k • written 4 months ago by ★ 2.3k
0
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0
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194
views
News: Course - Version Control for Researchers
VersionControl GIT Github
4 months ago by carlopecoraro2 ★ 2.3k
0
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0
replies
341
views
News: Course - INTRODUCTION TO PYTHON PROGRAMMING FOR BIOLOGISTS
Programming Python
updated 4 months ago by 39k • written 4 months ago by ★ 2.3k
0
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0
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240
views
News: Eukaryotic Metabarcoding course
eDNA Metabarcoding
updated 4 months ago by 39k • written 4 months ago by ★ 2.3k
0
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3
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425
views
News: NCBI update complete. Aspera users please update your client.
NCBI Submissions GenBank
4 months ago by PeterC_NCBI ▴ 260
0
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0
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224
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News: Course - Mass Spectrometry and Proteomics in R/Bioconductor
Bioconductor MassSpectrometry R Proteomics
4 months ago by carlopecoraro2 ★ 2.3k
0
votes
0
replies
386
views
News: Course - Machine Learning in R (for omics data)
Genomics omics MachineLearning R
4 months ago by carlopecoraro2 ★ 2.3k
2
votes
0
replies
258
views
News: Course - Reproducibility in Bioinformatics
Reproducibility
updated 4 months ago by 39k • written 4 months ago by ★ 2.3k
0
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0
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211
views
News: course - Multivariate data analysis with R and vegan
Statistics MultivariateAnalysis R vegan
4 months ago by carlopecoraro2 ★ 2.3k
0
votes
2
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765
views
News: Online Course - A Practical Introduction to NGS Data Analysis (February 01-03, 2023)
NGS DNAseq variant-calling RNAseq
4 months ago by David Langenberger 9.9k
0
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0
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284
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News: Bioinformatics courses in February
Genomics Bioinformatics-Training
updated 2 days ago by 39k • written 4 months ago by ★ 2.3k
0
votes
0
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788
views
News: Reminder: NCBI Aspera access, update Aspera Connect by Feb 1, 2023
Aspera NCBI SRA GenBank
4 months ago by PeterC_NCBI ▴ 260
1
vote
2
replies
452
views
News: Course: Network Analysis in R
NetworkAnalyis R
4 months ago by carlopecoraro2 ★ 2.3k
0
votes
0
replies
282
views
News: de novo RNA-seq Analysis Workshop
virtual workshop rna transcriptome
4 months ago by mia.nahom ▴ 10
0
votes
0
replies
380
views
News: Genomic Prediction course
Selective-Breeding Genomic-Prediction
updated 4 months ago by 39k • written 4 months ago by ★ 2.3k
1
vote
0
replies
438
views
News: course: Meta-analysis in R
Statistics MetaAnalysis R
4 months ago by carlopecoraro2 ★ 2.3k
0
votes
0
replies
361
views
News: GSEA in R/Bioconductor course
Bioconductor R GSEA GeneSetEnrichmentAnalysis
4 months ago by carlopecoraro2 ★ 2.3k
0
votes
0
replies
678
views
News: For NCBI Aspera access, update Aspera Connect by Feb 1, 2023
Aspera NCBI GenBank
4 months ago by PeterC_NCBI ▴ 260
0
votes
0
replies
307
views
News: Metabarcoding in Microbial Ecology
Metabarcoding Qiime2 16S MicrobialEcology R
4 months ago by carlopecoraro2 ★ 2.3k
0
votes
0
replies
279
views
News: Metagenomics tools recommeder system
NGS Metagenomics Recommender-system
updated 4 months ago by 39k • written 4 months ago by • 0
0
votes
0
replies
485
views
News: Hands-On NGS Data Analysis Workshops 2023
NGS Workshop RNA-Seq DNA-Seq
4 months ago by David Langenberger 9.9k
1
vote
5
replies
764
views
News: Cancer Genomics course - 2 seats left
Genomics Cancer-Genomics R
updated 4 months ago by 39k • written 5 months ago by ★ 2.3k
0
votes
0
replies
276
views
News: Course on Generalised Additive Models In R
Statistics GAMs R
5 months ago by carlopecoraro2 ★ 2.3k
0
votes
1
reply
446
views
News: Sex Chromosome Evolution course
Genomics Sex-Chromosome-Evolution
updated 4 months ago by 39k • written 5 months ago by ★ 2.3k
1
vote
2
replies
762
views
News: New chat server (Discord) for bioinformatics
community
5 months ago by Samuel Lampa ★ 1.3k
0
votes
0
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385
views
News: Online course - Genome Assembly and Annotation
Long-reads Genome-Annotation Biodiversity Genome-Assembly
updated 4 months ago by 39k • written 5 months ago by ★ 2.3k
1
vote
3
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578
views
News: NCBI BLAST ClusteredNR database now available for blastx and PSI-BLAST searches
PSI-BLAST blastx BLAST NCBI ClusteredNR
5 months ago by PeterC_NCBI ▴ 260
1
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0
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1.1k
views
News: New ebook: From cell line to Command line to learn computational biology
snakemake biology unix RNAseq computational
5 months ago by Ming Tommy Tang ★ 2.9k
0
votes
0
replies
413
views
News: Winter School in Bioinformatics - last seats available
Genomics Unix RNA-seq docker
updated 4 months ago by 39k • written 5 months ago by ★ 2.3k
0
votes
0
replies
290
views
News: Virtual RNA-seq Analysis (Model Organism) Workshop
virtual expression rna-seq analysis workshop
5 months ago by mia.nahom ▴ 10
0
votes
0
replies
337
views
News: Introduction to R Shiny course
WebApplications R RShiny
5 months ago by carlopecoraro2 ★ 2.3k
1
vote
0
replies
363
views
News: New version of ElasticBLAST (1.0.0) available.
NCBI ElasticBLAST BLAST
5 months ago by PeterC_NCBI ▴ 260
0
votes
1
reply
352
views
News: Courses in January - still a few seats available
R-Shiny Genomics Unix R
updated 4 months ago by 39k • written 5 months ago by ★ 2.3k
0
votes
0
replies
240
views
News: Sex Chromosome Evolution course
Genomics Sex-Chromosome-Evolution
updated 5 months ago by 39k • written 5 months ago by ★ 2.3k
0
votes
0
replies
290
views
News: Cellosaurus release 44 is available
cellosaurus cell-line
updated 5 months ago by 39k • written 5 months ago by ▴ 110
0
votes
0
replies
268
views
News: Introductory video to the Cellosaurus
cellosaurus cell-line
updated 5 months ago by 39k • written 5 months ago by ▴ 110
0
votes
3
replies
670
views
News: Nvidia Clara Parabricks is FREE for R&D
nvidia workflow gpu
updated 5 months ago by 2.7k • written 5 months ago by 154k
2
votes
3
replies
418
views
News: NCBI Comparative Genome Viewer now allows searches for genes across aligned assemblies
Browser NCBI Alignments Genome
5 months ago by PeterC_NCBI ▴ 260
1
vote
6
replies
803
views
News: Course - FLOW CYTOMETRY ANALYSIS WITH R/BIOCONDUCTOR
Bioconductor FlowCytometry R
updated 4 months ago by ▴ 70 • written 5 months ago by ★ 2.3k
0
votes
0
replies
229
views
News: INTRODUCTION TO ANALYTICAL PALEOBIOLOGY: FOSSIL RECORD BIASES, DIVERSITY, & BIOGEOGRAPHY
Biogeography Paleobiology R
5 months ago by carlopecoraro2 ★ 2.3k
1
vote
0
replies
242
views
News: Analysis of Cancer Genomes Using R and Bioinformatic Tools
Genomics Cancer-Genomics R
updated 6 months ago by 39k • written 6 months ago by ★ 2.3k
0
votes
0
replies
386
views
News: course - GENOME ASSEMBLY USING OXFORD NANOPORE SEQUENCING
Long-reads Assembly Nanopore Genome
6 months ago by carlopecoraro2 ★ 2.3k
0
votes
0
replies
224
views
News: Online training - VERSION CONTROL FOR RESEARCHERS
Version Control Git Github
6 months ago by carlopecoraro2 ★ 2.3k
0
votes
1
reply
291
views
News: Research Training In NGS Data Analysis
analysis data-analysis
updated 6 months ago by 39k • written 6 months ago by • 0
0
votes
0
replies
330
views
News: Bayesian regression modeling in R course
RegressionModeling Bayesian R
6 months ago by carlopecoraro2 ★ 2.3k
1,000 results • Page 2 of 20
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Why do so many biomarker based classifiers claim high accuracy but rarely used in clinical setting?
Java memory issue in GATK
Answer: ChatGPT optimized for bioinformatics questions
Answer: ChatGPT optimized for bioinformatics questions
Comment: ChatGPT optimized for bioinformatics questions
ChatGPT optimized for bioinformatics questions
ChatGPT optimized for bioinformatics questions
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Recent Replies
Answer: Creating a local version of Clustered NR database by PeterC_NCBI ▴ 260
Thanks @genomax > This seems reasonable since it should capture significant part of sequence to search against ( 90% identity and 90% …
Comment: If I execute "AddOrReplaceReadGroups" on a sarted and duplicate-marked .bam fil by Pierre Lindenbaum 154k
1) read groups should have been specified from the start (eg. with bwa mem -R ) 2) if you do'nt specify SORT_ORDER, the order is the same …
Comment: Asking for feedback on a Python library for computing alignments by Alexander ▴ 100
Does it support substitution matrices - e.g. blossum62 - for local protein alignments ? Does it support different gaps for gat open, and …
Comment: ChatGPT optimized for bioinformatics questions by Alexander ▴ 100
May be you can consider to make a talk about that work for your community "sciBerloga" - see previous talks: https://www.youtube.com/@SciBe…
Answer: where to obtain hg19 reference transcriptome in gencode by GenoMax 130k
[**On this page**][1] Transcriptome: https://ftp.ebi.ac.uk/pub/databases/gencode/Gencode_human/release_43/GRCh37_mapping/gencode.v43lift…
Comment: GSEA application not launching by GenoMax 130k
If you have not, look in "System settings" and "security" to see if the OS is blocking the application from launching.
Comment: Decoding MM and ML tags in .SAM file by Alex Reynolds 35k
I made changes to how I decode m6A events and updated links in the answer above. Python code is in a separate repository. Javascript code i…
Comment: How do I calculate differential expression for RNA-seq values with the "limma" p by John • 0
So the manual uses CPM instead of TPM. Do I need to adjust the formulae they use, or is it still the same? Also, in the manual, it uses a …
Answer: synteny viewer by cmdcolin ★ 3.0k
I compile a large list of visualization tools, here are all tools I have tagged "comparative" which can include synteny viewers https://cmd…
Comment: Limma returned only positive logFC values by melissachua90 ▴ 40
Thank you for your kind comments.
Comment: ChatGPT optimized for bioinformatics questions by Sasha ▴ 360
hi Jesse - we're hoping to build custom lab specific private experiences for folks. You can check it out here and reach out if you're inter…
Comment: ChatGPT optimized for bioinformatics questions by Sasha ▴ 360
This is awesome prodding. Will definitely try to address this use case; especially it being more explicit with the citations back to papers…
Comment: ChatGPT optimized for bioinformatics questions by Sasha ▴ 360
Awesome - will take a look!
Answer: ChatGPT optimized for bioinformatics questions by Alexander ▴ 100
Thanks for sharing ! I asked about score calculation answer is quite good , though the last example seems not fully correct ![enter i…
Comment: Filtering genes after TPM normalization by Meisam ▴ 180
While not a fan of it, I’ve seen papers where authors used a cpm or tpm value cutoff of 1 to filter their count table. Since this threshold…
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