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News: Workshop on Virtual Screening on Drug Discovery from scratch (15-16 September, 2023 : 07.00 - 09.00 PM IST)
workshop virtual-screening
updated 7 weeks ago by 41k • written 11 weeks ago by • 0
0
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0
replies
224
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News: RNAseq data analysis with R/Bioconductor
R RNA-seq Bioconductor
updated 7 weeks ago by 41k • written 11 weeks ago by ★ 2.4k
0
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0
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246
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News: Course - RNAseq in non-model organisms
R Differential-Expression-Analysis RNA-seq Bioconductor
updated 7 weeks ago by 41k • written 11 weeks ago by ★ 2.4k
4
votes
2
replies
393
views
News: Standalone NCBI ClusteredNR database now available for download
ClusteredNR NCBI standalone BLAST
11 weeks ago by PeterC_NCBI ▴ 370
0
votes
0
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236
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News: Virtual Variant Detection Workshop: September 11-14, 2023
tutorial detection genomics workshop variant
12 weeks ago by mia.nahom ▴ 10
0
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0
replies
226
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News: Introduction to Deep Learning for Biologists course
Python Deep-Learning Machine-Learning
updated 12 weeks ago by 41k • written 12 weeks ago by ★ 2.4k
0
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0
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222
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News: Course - Reproducibility Data Analysis with R
R renv Version-Control Reproducibility
updated 7 weeks ago by 41k • written 12 weeks ago by ★ 2.4k
0
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0
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304
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News: Online course: Easily analyze single cell RNA-seq data with Cellenics®, a user-friendly web-based platform
scRNA-seq training single-cell-RNA-seq
updated 12 weeks ago by 41k • written 12 weeks ago by • 0
0
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0
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357
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News: Join Our Online Course: Incorporating Paleogenomes into Evolutionary Genomics Studies
Paleogenomics Genomics aDNA Adaptation-Genomics
updated 12 weeks ago by 41k • written 12 weeks ago by ★ 2.4k
0
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230
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News: Course on Phylogenomics
Phylogenetic-Inference Divergence-Time-Estimation Genomics Phylogenomics
updated 12 weeks ago by 41k • written 12 weeks ago by ★ 2.4k
0
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0
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261
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News: Course. -Multivariate Data Analysis with R and vegan
R vegan MultivariateDataAnalysis
3 months ago by carlopecoraro2 ★ 2.4k
3
votes
2
replies
480
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News: NCBI BLAST+ 2.14.1 Now Available
NCBI BLAST
3 months ago by PeterC_NCBI ▴ 370
1
vote
0
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214
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News: Course - Introduction to CRISPR
CRISPR Evolution GenomeEditing
3 months ago by carlopecoraro2 ★ 2.4k
0
votes
0
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224
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News: Upcoming Learning Opportunities and Important Updates
R Programming aDNA Paleogenomics
3 months ago by carlopecoraro2 ★ 2.4k
3
votes
5
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2.0k
views
News: (18 August - "Enzyme Stability Prediction") A free webinar on on-going CAFA5 (Critical Assessment of Functional Annotation of proteins) challenge
gene-ontology CAFA protein
3 months ago by Alexander ▴ 200
0
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0
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269
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News: Spatial Omics course
Spatial-Omics Multiplexed-Image-Analysis
updated 7 weeks ago by 41k • written 3 months ago by ★ 2.4k
1
vote
0
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342
views
News: Generalized Additive Models in R
R GAMs Courses
3 months ago by carlopecoraro2 ★ 2.4k
0
votes
0
replies
233
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News: NIAID Data Ecosystem Discovery Portal
databases data opendata api
3 months ago by ehaag ▴ 20
0
votes
0
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301
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News: Course - Structural Variant detection and comparison
SVs Structural-Variants
updated 3 months ago by 41k • written 3 months ago by ★ 2.4k
0
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0
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272
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News: course -Developing R/Bioconductor Packages for Genomics
R Genomics Bioconductor
updated 3 months ago by 41k • written 3 months ago by ★ 2.4k
4
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3
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782
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News: You may need to cleanup duplicate NCBI BLAST nt database volumes on your system
databases NCBI BLAST
3 months ago by PeterC_NCBI ▴ 370
0
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0
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297
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News: Course - Data Visualization in R with ggplot2
R Data-Visualization ggplot2
updated 4 months ago by 41k • written 4 months ago by ★ 2.4k
38
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7
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1.9k
views
News: 2 last seats available - 7th Berlin Summer School in NGS Data Analysis (September 4-8 in Berlin)
Transcriptomics DNA-Seq Variant-Calling RNA-Seq
4 months ago by David Langenberger 10k
9
votes
4
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2.2k
views
7 follow
News: fastp 0.22 released, with new FASTQ deduplication feature.
fastp
updated 4 months ago by 41k • written 2.3 years ago by ★ 2.5k
0
votes
0
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348
views
News: Course - RADseq data analysis with Stacks
RADseq Phylogenomics Stacks Population-genomics
updated 3 months ago by 41k • written 4 months ago by ★ 2.4k
0
votes
0
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301
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News: course - DNA METHYLATION IN ECOLOGY AND EVOLUTION
Non-Model-Organisms DNA-Methylation BS-seq
updated 3 months ago by 41k • written 4 months ago by ★ 2.4k
2
votes
0
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413
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News: Registration open for Nextflow Summit 2023, and free online Nextflow / nf-core training
nextflow
4 months ago by Marcel Ribeiro-Dantas ▴ 450
0
votes
0
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315
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News: 2-day Course on Introduction to Nextflow
Workflow Reproducibility Nextflow
updated 4 months ago by 41k • written 4 months ago by ★ 2.4k
0
votes
0
replies
280
views
News: Physalia courses in September
Genomics R Data-Science
updated 4 months ago by 41k • written 4 months ago by ★ 2.4k
0
votes
0
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334
views
News: Cellosaurus release 46
knowledgebase cell-line cellosaurus
5 months ago by Amos Bairoch ▴ 110
0
votes
0
replies
258
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News: Course - Data Manipulation and Visualization in Python
Data-Manipulation Data-Visualisation Python
updated 5 months ago by 41k • written 5 months ago by ★ 2.4k
0
votes
0
replies
401
views
News: Kindle edition of book NO LONGER available. Book available for free
Computational-Biology
5 months ago by sinha.shriprakash ▴ 20
0
votes
0
replies
360
views
News: Course on Generalised Linear Mixed Models in R
GLMM R Statistics Mixed-Models
updated 5 months ago by 41k • written 5 months ago by ★ 2.4k
0
votes
0
replies
359
views
News: Course - Network Analysis in Systems Biology with R/Bioconductor
R Systems-Biology Network-Analysis Bioconductor
updated 3 months ago by 41k • written 5 months ago by ★ 2.4k
0
votes
0
replies
264
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News: course on Reproducibility data analysis with R
R Reproducibility Git Github
5 months ago by carlopecoraro2 ★ 2.4k
38
votes
8
replies
1.3k
views
6 follow
News: What happens when a bioinformatician has his own genome sequenced for $300?
DNAseq DNA WGS
updated 5 months ago by 35k • written 5 months ago by 10k
4
votes
0
replies
456
views
News: A Practical Introduction to Single-Cell RNA-Seq Data Analysis (November 8-10, 2023 in Berlin, Germany)
NGS RNA-Seq single-cell workshop
5 months ago by David Langenberger 10k
0
votes
0
replies
528
views
News: Hands-On NGS Data Analysis Courses 2023
RNA-seq DNA-seq Workshop
updated 5 months ago by 41k • written 5 months ago by 10k
1
vote
0
replies
336
views
News: Course - Introduction to Deep Learning for biologists
Genomics Deep-Learning Python NGS
updated 5 months ago by 41k • written 5 months ago by ★ 2.4k
1
vote
0
replies
343
views
News: Good bioinformatics training resources
NGS
updated 5 months ago by 158k • written 5 months ago by ▴ 70
0
votes
0
replies
407
views
News: Generalized Linear Models (GLM) course in R
R GLM statistics
5 months ago by carlopecoraro2 ★ 2.4k
0
votes
0
replies
380
views
News: course - Advanced Python programming
Python Deep-Learning Machine-Learning
updated 3 months ago by 41k • written 6 months ago by ★ 2.4k
3
votes
2
replies
569
views
News: Participate in a NCBI/NIAID Virtual Codeathon: VCF Files for Population Genomics, Jul 31 - Aug 4, 2023
VCF SARS-CoV-2 NCBI Codeathon
6 months ago by PeterC_NCBI ▴ 370
0
votes
0
replies
295
views
News: Virtual Genome Annotation Workshop
annotation genome workshop
6 months ago by mia.nahom ▴ 10
0
votes
0
replies
518
views
News: Course - Longitudinal data analysis in R
Longitudinal-Data R Genomics
updated 6 months ago by 41k • written 6 months ago by ★ 2.4k
0
votes
0
replies
307
views
News: New version of ElasticBLAST (1.1.0) available from NCBI
ElasticBLAST BLAST. NCBI
6 months ago by PeterC_NCBI ▴ 370
0
votes
0
replies
290
views
News: Course - Introduction to CRISPR for Ecology and Evolution Studies
Genomics CRISPR
6 months ago by carlopecoraro2 ★ 2.4k
0
votes
0
replies
1.2k
views
News: GWAS course
GWAS R
updated 6 months ago by 41k • written 6 months ago by ★ 2.4k
0
votes
0
replies
387
views
News: Course - RNAseq data analysis with R/Bioconductor
R Tidyverse RNA-seq Bioconductor
updated 3 months ago by 41k • written 6 months ago by ★ 2.4k
0
votes
0
replies
354
views
News: Course - Multiplex imagine analysis/ Spatial Omics
Multiplex-Image-Analysis Spatial-Omics
updated 6 months ago by 41k • written 6 months ago by ★ 2.4k
1,000 results • Page 2 of 20
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Answer: Mapping quality in `vg giraffe`
Comment: Identify clusters of populations based on gene expression
Answer: How can I map coordinates between two strains of yeast?
Comment: Construction of single sequence assembly out of contigs
Answer: featureCounts results: low rate of 'Successfully assigned alignments'
The Biostar Herald for Monday, November 27, 2023
Comment: use bioservices.UniProt (python) to map uniprot accession to [multiple] ensembl
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Recent Replies
Comment: How to do simple pathway analysis? by he1k • 0
Hi [AK][1], I downloaded the KO.keg file. I was wondering what tool(s) you used to generate the "KO.tsv" file as you showed here. Thanks. …
Comment: How can I map coordinates between two strains of yeast? by dthorbur ▴ 840
I think that is an alternative to a synteny analysis, but I only know liftover in terms of annotations. OP asks for "coordinates between th…
Comment: Bowtie mapping for single_end read by ATpoint 78k
I am sceptical any tweaking of parameters will make a notable difference. Parameters in bowtie are very good at default, and given it's ChI…
Comment: How can I map coordinates between two strains of yeast? by cmdcolin ★ 3.4k
would something like liftover not be recommended? honest question
Comment: Best practices for differential expression analysis with low-yield Nanopore/ONT by dthorbur ▴ 840
That's good. But I still suspect this data might be really difficult to analyse. I have a handful of suggestions I would do to assess wheth…
Comment: Identify clusters of populations based on gene expression by dthorbur ▴ 840
One gene might not be enough data to "cluster" based on expression. Unless I'm missing something, that would just be breaking a single cont…
Comment: Best practices for differential expression analysis with low-yield Nanopore/ONT by tw_140 • 0
Yes, I performed ribosome depletion using an RNAse H based method.
Comment: Circular genome browser by cmdcolin ★ 3.4k
that's great to hear. one "proxy" for interactive is looking at the JS based tools, many are web based and interactive as a result. I have …
Comment: R ComplexHeatmap - Dividing Column Annotation into Distinct Y-Axis Scales by TC_Chang ▴ 10
Hi jv, Thank you for your reply. Basically, I'm trying to generate the figure shown below with two different y-axis scales. Any suggestio…
Comment: Best practices for differential expression analysis with low-yield Nanopore/ONT by dthorbur ▴ 840
I don't have a suggestion for low yield DE analyses, but I am curious about the samples. Did you conduct any ribo-depletion steps prior to …
Answer: How can I map coordinates between two strains of yeast? by dthorbur ▴ 840
It sounds like you are looking for synteny between the two genomes. I'm assuming they are assembled, but that may not be the case. If so, […
Comment: Identify clusters of populations based on gene expression by Nitin Narwade ★ 1.5k
Why don't you just plot it on your UMAP If it is specific to one cluster/sub-population you should get a relatively high expression in that…
Answer: The difference blastn output when using subject and db options by GenoMax 136k
Default `task` option is `megablast` for `blastn` which looks for `highly similar sequences` compared to `blastn` which is looking for `som…
Comment: Discrepancy in total number of bases in trimmed read1 and read2 files after BBDu by GenoMax 136k
https://www.biostars.org/u/14684/ may comment on this but it may be the order of operations that is causing this. After the `tpe` is applie…
Comment: Construction of single sequence assembly out of contigs by colindaven 5.7k
Inspector (only for long reads) and Merqury for short reads are also pretty good methods for doing a QC of your assembly.
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