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News: FINAL CALL - Workshop - Single-Cell RNA-Seq Data Analysis: A Practical Introduction (November 8-10, 2023 in Berlin)
workshop RNA-Seq scRNA-Seq single-cell
6 months ago by David Langenberger 11k
0
votes
1
reply
830
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News: FINAL CALL: Online Course - A Practical Introduction to NGS Data Analysis - October 23-25, 2023
DNA-seq Workshop RNA-seq
6 months ago by David Langenberger 11k
0
votes
0
replies
407
views
News: Course - Metabolomics in R/Bioconductor
R Data-Analysis Metabolomics Bioconductor
updated 6 months ago by 43k • written 6 months ago by ★ 2.5k
13
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9
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2.6k
views
7 follow
News: Inviting NEW Biostars moderators to join Biostars slack channel
slack moderator
6 months ago by GenoMax 141k
0
votes
0
replies
366
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News: Cellosaurus release 47 is available
cellosauraus cell-line biocuration knowledgebase
updated 6 months ago by 43k • written 6 months ago by ▴ 120
0
votes
0
replies
328
views
News: Course: Seascape Genomics in R course
R GEA Seascape-Genomics Adaptation-Genomics
updated 6 months ago by 43k • written 6 months ago by ★ 2.5k
0
votes
0
replies
341
views
News: Course :MACHINE LEARNING - A HANDS-ON INTRODUCTION IN R
R Statistical-Learning Omics Machine-Learning
updated 6 months ago by 43k • written 6 months ago by ★ 2.5k
0
votes
0
replies
460
views
News: Course - Gene Set Enrichment Analysis in R/Bioconductor
Gene-Set-Enrichment-Analysis GSEA R Genomics Bioconductor
updated 6 months ago by 43k • written 6 months ago by ★ 2.5k
0
votes
0
replies
353
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News: New NCBI Datasets APIs to Replace Old Ones
NCBI API Datasets
6 months ago by PeterC_NCBI ▴ 410
0
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0
replies
388
views
News: RADseq data analysis course
RADseq Phylogenomics Stacks Population-Genomics
6 months ago by carlopecoraro2 ★ 2.5k
0
votes
1
reply
610
views
News: EMBL-EBI virtual course | Introduction to RNA-seq and functional interpretation
RNA-seq
updated 6 months ago by 43k • written 6 months ago by • 0
1
vote
0
replies
404
views
News: Online Training - Bioinformatics Pipeline Development with Nextflow (November 15-17, 2023)
nextflow automation pipeline development
7 months ago by David Langenberger 11k
2
votes
1
reply
457
views
News: Successful NCBI NIAID Codeathon on VCF Files in SARS-CoV-2 Genomics
NCBI Codeathon
updated 6 months ago by 10k • written 7 months ago by ▴ 410
0
votes
0
replies
359
views
News: Research Breakthrough in Identifying Viral Escape Mutations for Improved Therapeutic Design
sequence-analysis sars-cov-2 spike-protein
updated 7 months ago by 43k • written 7 months ago by • 0
0
votes
0
replies
343
views
News: Course: Data Manipulation and Visualisation with Python
Python Data-Visualization Data-Manipulation
updated 7 months ago by 43k • written 7 months ago by ★ 2.5k
0
votes
2
replies
916
views
News: The Practice of RADseq: Population Genomics Analysis with Stacks (RADS02) Early bird deadline approaching - 20th September
population-genomics radseq stacks
updated 7 months ago by ★ 1.7k • written 7 months ago by ▴ 110
0
votes
0
replies
341
views
News: Course - GLMMs in R
GLMM Mixed-Models
updated 7 months ago by 43k • written 7 months ago by ★ 2.5k
0
votes
0
replies
351
views
News: Introduction to Nextflow (2 seats left)
Nextflow Workflow Reproducibility
updated 7 months ago by 43k • written 7 months ago by ★ 2.5k
0
votes
0
replies
408
views
News: Genomic Prediction course
Genomic-Prediction GWAS
updated 6 months ago by 43k • written 7 months ago by ★ 2.5k
0
votes
0
replies
443
views
News: course - Population Genomics Using Ancient DNA Data
Genomics aDNA Population-Genomics
updated 6 months ago by 43k • written 7 months ago by ★ 2.5k
3
votes
5
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1.3k
views
News: Ensembl Release 104 and newer GTF files no longer have genes sorted by position
Ensembl GTF
updated 7 months ago by ▴ 120 • written 17 months ago by ▴ 30
0
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0
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383
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News: NCBI ClinVar XML update to accommodate somatic variants
SNP XML ClinVar NCBI
3 months ago by PeterC_NCBI ▴ 410
0
votes
0
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297
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News: Workshop on Virtual Screening on Drug Discovery from scratch (15-16 September, 2023 : 07.00 - 09.00 PM IST)
workshop virtual-screening
updated 6 months ago by 43k • written 7 months ago by • 0
0
votes
0
replies
329
views
News: RNAseq data analysis with R/Bioconductor
R RNA-seq Bioconductor
updated 6 months ago by 43k • written 7 months ago by ★ 2.5k
0
votes
0
replies
342
views
News: Course - RNAseq in non-model organisms
R Differential-Expression-Analysis RNA-seq Bioconductor
updated 6 months ago by 43k • written 7 months ago by ★ 2.5k
4
votes
2
replies
589
views
News: Standalone NCBI ClusteredNR database now available for download
ClusteredNR NCBI standalone BLAST
7 months ago by PeterC_NCBI ▴ 410
0
votes
0
replies
351
views
News: Virtual Variant Detection Workshop: September 11-14, 2023
tutorial detection genomics workshop variant
7 months ago by mia.nahom ▴ 10
0
votes
0
replies
310
views
News: Introduction to Deep Learning for Biologists course
Python Deep-Learning Machine-Learning
updated 7 months ago by 43k • written 7 months ago by ★ 2.5k
0
votes
0
replies
350
views
News: Course - Reproducibility Data Analysis with R
R renv Version-Control Reproducibility
updated 6 months ago by 43k • written 7 months ago by ★ 2.5k
0
votes
0
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435
views
News: Online course: Easily analyze single cell RNA-seq data with Cellenics®, a user-friendly web-based platform
scRNA-seq training single-cell-RNA-seq
updated 7 months ago by 43k • written 7 months ago by • 0
0
votes
0
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490
views
News: Join Our Online Course: Incorporating Paleogenomes into Evolutionary Genomics Studies
Paleogenomics Genomics aDNA Adaptation-Genomics
updated 7 months ago by 43k • written 7 months ago by ★ 2.5k
0
votes
0
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379
views
News: Course on Phylogenomics
Phylogenetic-Inference Divergence-Time-Estimation Genomics Phylogenomics
updated 7 months ago by 43k • written 7 months ago by ★ 2.5k
0
votes
0
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388
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News: Course. -Multivariate Data Analysis with R and vegan
R vegan MultivariateDataAnalysis
7 months ago by carlopecoraro2 ★ 2.5k
3
votes
2
replies
728
views
News: NCBI BLAST+ 2.14.1 Now Available
NCBI BLAST
7 months ago by PeterC_NCBI ▴ 410
1
vote
0
replies
296
views
News: Course - Introduction to CRISPR
CRISPR Evolution GenomeEditing
8 months ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
317
views
News: Upcoming Learning Opportunities and Important Updates
R Programming aDNA Paleogenomics
8 months ago by carlopecoraro2 ★ 2.5k
3
votes
5
replies
2.3k
views
News: (18 August - "Enzyme Stability Prediction") A free webinar on on-going CAFA5 (Critical Assessment of Functional Annotation of proteins) challenge
gene-ontology CAFA protein
8 months ago by Alexander ▴ 220
1
vote
0
replies
407
views
News: Spatial Omics course
Spatial-Omics Multiplexed-Image-Analysis
updated 6 months ago by 43k • written 8 months ago by ★ 2.5k
1
vote
0
replies
450
views
News: Generalized Additive Models in R
R GAMs Courses
8 months ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
348
views
News: NIAID Data Ecosystem Discovery Portal
databases data opendata api
8 months ago by ehaag ▴ 20
0
votes
0
replies
486
views
News: Course - Structural Variant detection and comparison
SVs Structural-Variants
updated 8 months ago by 43k • written 8 months ago by ★ 2.5k
0
votes
0
replies
371
views
News: course -Developing R/Bioconductor Packages for Genomics
R Genomics Bioconductor
updated 8 months ago by 43k • written 8 months ago by ★ 2.5k
4
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3
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1.0k
views
News: You may need to cleanup duplicate NCBI BLAST nt database volumes on your system
databases NCBI BLAST
7 months ago by PeterC_NCBI ▴ 410
0
votes
0
replies
389
views
News: Course - Data Visualization in R with ggplot2
R Data-Visualization ggplot2
updated 8 months ago by 43k • written 8 months ago by ★ 2.5k
38
votes
7
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2.2k
views
News: 2 last seats available - 7th Berlin Summer School in NGS Data Analysis (September 4-8 in Berlin)
Transcriptomics DNA-Seq Variant-Calling RNA-Seq
8 months ago by David Langenberger 11k
9
votes
4
replies
2.5k
views
7 follow
News: fastp 0.22 released, with new FASTQ deduplication feature.
fastp
updated 8 months ago by 43k • written 2.7 years ago by ★ 2.5k
0
votes
0
replies
481
views
News: Course - RADseq data analysis with Stacks
RADseq Phylogenomics Stacks Population-genomics
updated 8 months ago by 43k • written 9 months ago by ★ 2.5k
0
votes
0
replies
424
views
News: course - DNA METHYLATION IN ECOLOGY AND EVOLUTION
Non-Model-Organisms DNA-Methylation BS-seq
updated 8 months ago by 43k • written 9 months ago by ★ 2.5k
2
votes
0
replies
541
views
News: Registration open for Nextflow Summit 2023, and free online Nextflow / nf-core training
nextflow
9 months ago by Marcel Ribeiro-Dantas ▴ 470
0
votes
0
replies
433
views
News: 2-day Course on Introduction to Nextflow
Workflow Reproducibility Nextflow
updated 9 months ago by 43k • written 9 months ago by ★ 2.5k
1,000 results • Page 3 of 20
Recent Votes
Comment: Free/open source 23andme-like analysis
A: How to obtain all accession.version identifiers for a BLAST database using ENTRE
Comment: Editing Human Reference Genome by adding a CDS
Answer: Plink merge errors.
Gene Set Enrichment Analysis
Gene Set Enrichment Analysis
A: Counting Number Of Bases In A Fastq File
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Recent Replies
Answer: Plink merge errors. by Dinmukhamed • 0
I found answer https://www.biostars.org/p/101191/.
Comment: Ciriquant not configuring hisat2 indexed files by Atul K. • 0
it worked. Thank you. Now my terminal is crashing, seems 16gb of RAM and 4 cores isn't enough. Can you suggest something?
Comment: Adding CB tag to bam file by Maria • 0
I checked Picard ```AddOrReplaceReadsGroups``` and ```AddOATag```. Is that what you're referring to?
Comment: Free/open source 23andme-like analysis by Michael 54k
Noted that 'accurate' wasn't among your criteria ;) Anyway, most variant callers are free open-source software. However, for ancestry ana…
Answer: Mapping cDNA sequence of a single gene to a genome not hosted at UCSC server (wi by Pierre Lindenbaum 161k
> server so I cannot use Blat for this purpose. blat is avilable as a standane tool: http://hgdownload.soe.ucsc.edu/admin/exe/linux.x86…
Answer: Mapping cDNA sequence of a single gene to a genome not hosted at UCSC server (wi by b.contreras.moreira ▴ 160
My favourite for this task would be [GMAP]( http://research-pub.gene.com/gmap ), which can produce GFF format with option `-f 2`. It is…
Answer: Prediction of Ribosomal RNA Genes Using RNAmmer Software by colindaven 6.3k
Another alternative is the truly free implementation barrnap https://github.com/tseemann/barrnap. This is also installable via conda so qui…
Comment: Filtration Of Reads With Length Lower Than 30 From Bam by Hagen ▴ 10
thanks! This saved me quite some time, I was about to write code to calculate the aligned length from the CIGAR. But this can be done with …
Comment: Per base sequence content failed miserably by Kai Xin • 0
will look into that. Thank you very much
Comment: Korean human genome reference file by SeoGyun • 0
Thanks..... But I want to do imputation, so I have to make it as a vcf file, but the site only has a fatsa file....
Comment: miRNAs quantification using mirdeep2 tool by Ashok • 0
thank you for your reply https://github.com/rajewsky-lab/mirdeep2/blob/master/TUTORIAL.md i saw this github tutorial for miRNA quantifica…
Comment: Load a full GFF3 into annotation track using arrow (Apollo) by cmdcolin ★ 3.8k
Hi there, I let a developer know of this thread and they said they can check it out next week. Feel free to post to the https://github.com/…
Comment: How to get the reference panel for UKBB by 航太郎 • 0
Thanks for your guide!
Comment: Removing duplicates by joe ▴ 510
I'd try those OP @samuel recommends My guess is you're new to ONT, fast5 is the 'raw data' which is current over time...other than generat…
Comment: RNA seq differential expression analysis by swbarnes2 14k
No. Find a tutorial, try it, then if you have specific questions, ask of the galaxy help site.
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