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News: Online training - Introduction to Deep Learning for biologists
Python DeepLearning bigdata MachineLearning
7 months ago by carlopecoraro2 ★ 2.3k
0
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0
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406
views
News: 2023 EMBL Courses and Conferences
EMBL EMBLMalaria EESImaging
7 months ago by EMBL Events • 0
0
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0
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273
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News: Online training -Getting the most out of R
R Science analysis Data
7 months ago by carlopecoraro2 ★ 2.3k
0
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0
replies
272
views
News: Online training - Cancer Genomics in R
Cancer Genomics R
updated 3 months ago by 38k • written 7 months ago by ★ 2.3k
0
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0
replies
257
views
News: Online training - DNA methylation in plants and animals
OxfordNanopore DNAMethylation BSseq longreads PacBio
7 months ago by carlopecoraro2 ★ 2.3k
0
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0
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285
views
News: 3rd edition of the Analysis of RNA sequencing data with R/Bioconductor course.
RNAseq Bioconductor R
8 months ago by carlopecoraro2 ★ 2.3k
4
votes
1
reply
2.1k
views
News: 2014 ISCB Wikipedia Article Competition announcement
ISCB competition Wikipedia
written 8.6 years ago by ★ 2.0k
1
vote
2
replies
560
views
News: Online training - Introduction to Nextflow
Bionfirmatics Pipeline Workflow Netflow
7 months ago by carlopecoraro2 ★ 2.3k
4
votes
1
reply
392
views
News: Online Course - A Practical Introduction to NGS Data Analysis (September 26-28, 2022)
workshop ngs data-analysis
updated 8 months ago by 38k • written 8 months ago by 9.9k
0
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0
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364
views
News: Final Call! Tomorrow (7/8) is the Deadline for Phase 1 submissions of the NCTR Indel Calling from Oncopanel Sequencing Data Challenge!
oncopanel indel-calling
updated 3 months ago by 38k • written 8 months ago by ▴ 10
0
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0
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306
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News: Automate your NGS data analyses and create reproducible/scalable pipelines with NextFlow
pipeline Nextflow automation
8 months ago by David Langenberger 9.9k
0
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1
reply
711
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News: Hands-On RNA-Seq Data Analysis Workshop in Leipzig, Germany (October 25-28, 2022)
RNA-Seq Transcriptomics NGS Workshop
8 months ago by David Langenberger 9.9k
0
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3
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978
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News: Less Than One Month Remaining until the Submission Deadline for Phase 1 of the NCTR Indel Calling from Oncopanel Sequencing Data Challenge!
oncopanel indel-calling
updated 3 months ago by 38k • written 9 months ago by ▴ 10
0
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0
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281
views
News: EBI Competency Hub Supporting competency-based training and professional development.
ebi carreer
8 months ago by Pierre Lindenbaum 153k
0
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0
replies
271
views
News: Introduction to Statistics in R for biologists
tydeverse R Statistics
8 months ago by carlopecoraro2 ★ 2.3k
1
vote
0
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274
views
News: Data analysis with the Tidyverse in July (18th-21st).
Visualization R Tidyverse data-analysis
updated 8 months ago by 38k • written 8 months ago by ★ 2.3k
1
vote
0
replies
260
views
News: Use your standard DNA variant caller for SNP calling in Bisulfite-Seq data
bisulfite BS-Seq methylation
8 months ago by David Langenberger 9.9k
0
votes
0
replies
316
views
News: online training - Data Visualization with Python
Python Data-Visualization
updated 8 months ago by 38k • written 8 months ago by ★ 2.3k
0
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0
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345
views
News: Cellosaurus release 42 is available
line cell biocuration knowledgebase database
8 months ago by Amos Bairoch ▴ 110
0
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0
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273
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News: Online course- Reproducibility in Bioinformatics - 11-13 July
Docker Reproducibility
updated 3 months ago by 38k • written 9 months ago by ★ 2.3k
0
votes
0
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318
views
News: Online statistics courses
R statistics
9 months ago by carlopecoraro2 ★ 2.3k
0
votes
1
reply
367
views
News: API for accessing SARS-COV-2 genomic data
rpackage sars genomics api covid
updated 9 months ago by 126k • written 9 months ago by • 0
2
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0
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355
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News: UniProt: Annotation of biologically relevant ligands using ChEBI
binding protein site metal uniprot chebi
9 months ago by Elisabeth Gasteiger ★ 2.2k
3
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0
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387
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News: Tutorial on SemiBin (metagenonomics binning tool). June 14 - online
metagenomics binning
updated 9 months ago by 126k • written 9 months ago by ▴ 60
0
votes
0
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256
views
News: Nanopore direct RNA Sequencing - online course
Sequencing direct Nanopore RNA
9 months ago by carlopecoraro2 ★ 2.3k
0
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0
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244
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News: ONLINE COURSE - LINEAR MIXED MODELS IN R - September 26th-30th
Models Mixed R
9 months ago by carlopecoraro2 ★ 2.3k
7
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1
reply
453
views
News: NGSymposium - Conference in Computational Biology, 23-24.09
ML statistics conference ngschool
10 months ago by kzkedzierska ▴ 290
0
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0
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299
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News: ONLINE course "Population genomic inference from low-coverage whole-genome sequencing data"
lcWGS Genomics Population
10 months ago by carlopecoraro2 ★ 2.3k
0
votes
0
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298
views
News: Online course - Metabarcoding in microbial Ecology
Qiime2 Metabarcoding Microbial-Ecology
updated 3 months ago by 38k • written 10 months ago by ★ 2.3k
3
votes
1
reply
382
views
News: Free web seminars related to small non-coding RNA bioinformatics
smallRNA microRNA
updated 3 months ago by 38k • written 10 months ago by ▴ 60
0
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0
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297
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News: ONLINE COURSE - RADseq data analysis using Stacks
Phylogenomics Population RADseq Genomics Stacks
10 months ago by carlopecoraro2 ★ 2.3k
0
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0
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280
views
News: Online course - Developing R/Bioconductor packages for genomics
Bioconductor R
updated 3 months ago by 38k • written 10 months ago by ★ 2.3k
1
vote
0
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409
views
News: Phase 1 of the NCTR Indel Calling from Oncopanel Sequencing Data Challenge is now live!
oncopanel indel-calling
updated 3 months ago by 38k • written 10 months ago by ▴ 10
0
votes
2
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562
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News: ClusteredNR NCBI BLAST database provides faster searches and more informative BLAST results
NCBI BLAST
10 months ago by PeterC_NCBI ▴ 190
0
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0
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207
views
News: NCBI poster at Bio-IT World on the new cloud BLAST tool, ElasticBLAST
NCBI BLAST ElasticBLAST
10 months ago by PeterC_NCBI ▴ 190
1
vote
0
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279
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News: DATA ANALYSIS WITH THE TIDYVERSE in July (18th-21st).
tidyverse data R analysis
10 months ago by carlopecoraro2 ★ 2.3k
0
votes
0
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374
views
News: Introduction to Nextflow course
Nextflow
10 months ago by carlopecoraro2 ★ 2.3k
0
votes
0
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321
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News: Online Course - A Practical Introduction to NGS Data Analysis (May 16-18, 2022)
NGS RNA DNA Workshop
10 months ago by David Langenberger 9.9k
6
votes
0
replies
357
views
News: NGSchool2022: Machine Learning in Computational Biology
summer machine learning school ngschool ML statistics
11 months ago by kzkedzierska ▴ 290
0
votes
1
reply
332
views
News: Introduction to Deep Learning course
DeepLearning MachineLearning bigdata
updated 11 months ago by 21k • written 11 months ago by ★ 2.3k
3
votes
3
replies
735
views
News: Want to automate your NGS analyses and create reproducible/scalable pipelines? Join our hands-on Nextflow workshop!
nextflow NGS pipeline
11 months ago by David Langenberger 9.9k
0
votes
0
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868
views
News: Pre-Register for the NCTR Indel Calling from Oncopanel Sequencing Data Challenge with FDA’s National Center for Toxicological Research (NCTR) and pre…
oncopanel indel-calling
updated 3 months ago by 38k • written 11 months ago by ▴ 10
0
votes
0
replies
260
views
News: Virtual Genome Assembly Workshop : May 16-19, 2022
assembly Genome Workshop
11 months ago by singh.vijender ▴ 70
1
vote
0
replies
296
views
News: Data visualization in Python course
Data Visualization Python
11 months ago by carlopecoraro2 ★ 2.3k
0
votes
0
replies
271
views
News: Landscape Genomics in R course
LandscapeGenomics
11 months ago by carlopecoraro2 ★ 2.3k
0
votes
0
replies
279
views
News: Gene Set Enrichment Analysis in R workshop
GSE
11 months ago by carlopecoraro2 ★ 2.3k
0
votes
0
replies
250
views
News: Conservation Genomics Workshop
ConservationGenomics
11 months ago by carlopecoraro2 ★ 2.3k
0
votes
0
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267
views
News: A webinar about Harmony batch correction, by its author
scrna-seq single-cell rna-seq
11 months ago by Jennifer Pham ▴ 450
0
votes
1
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2.1k
views
News: Nature Index: Novogene is teaming up with laboratories worldwide for life sciences and human health research
NGS Nature Sequencing
updated 3 months ago by 38k • written 11 months ago by ▴ 240
0
votes
1
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796
views
News: ::FINAL CALL:: Online Course | A Practical Introduction to NGS Data Analysis | March 30 - April 1, 2022
DNA-Seq RNA-Seq Workshop
12 months ago by David Langenberger 9.9k
1,000 results • Page 3 of 20
Recent Votes
C: Converting an output de-novo transcriptome assembled with Trinity to a .gff3 fil
unplaced, unlocalized, ... scaffolds from hg19 to GRCh38
C: extracting heterozygous snp from a vcf file
Comment: March 13-16: Virtual Nextflow and nf-core training event in 5 languages
Answer: Where do find virulence gene information in a gff/gtf file?
Comment: split fasta file to train deep learning model
Criteria for filtering contigs after spades assembly
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Comment: samtools idxstats not removing ChrM by Jeremy Leipzig 21k
can we see the output from this? `samtools idxstats chipseq/results/bowtie2/PPARg/PPARg_Input_Rep1_aln_sorted.bam` conversely just as an e…
Comment: Nextflow Stringtie: command not found Error by ATpoint 70k
It's bad practice to delete posts that received an answer ( = a user invested time - in this case me but it of course applies generally). D…
Comment: Converting an output de-novo transcriptome assembled with Trinity to a .gff3 fil by EkHe • 0
Hi @juke34, if you're able, can you please clarify something for me (based on the answer you've given here)? Thanks a lot in advance. I als…
Answer: Practical Haplotype Graph -- Pathing Error by lcj34 ▴ 220
FYI - The latest PHG docker version (tag 1.4) has a fix for this issue.
Comment: Nextflow: No space left on device, process using output directory as input? by Maxime Garcia ▴ 220
Nextflow should only link inputs (unless stated otherwise), so even if you use outdir as input it should not be much of an issue, but still…
Comment: Problem in converting SAM to BAM file by DROP SEQ by lieven.sterck 14k
Hi https://www.biostars.org/u/126271/, welcome. it might be good to add some more info on your "question". Now it only shows an error mes…
Comment: Trying to install Roary with Conda results in error message by tobiwan • 0
Thank you for your answer I'm using Ubuntu 22.04.2 LTS, command line used: conda install roary. Or do you need a screenshot of the whole …
Comment: Nextflow: No space left on device, process using output directory as input? by colindaven 4.5k
Yes, don't use the outdir as an input. You might get infinite loops.
Comment: UnicodeDecodeError: 'utf-8' codec can't decode byte 0x8b in position 1: invalid by wangjincheng • 0
I tried unzipped file, it shows the same error
Comment: UnicodeDecodeError: 'utf-8' codec can't decode byte 0x8b in position 1: invalid by Pierre Lindenbaum 153k
> use python package to load and analysis vcf.gz files looks like it doesn't like gzipped file. Are you sure this software can read gzip…
Comment: Trying to install Roary with Conda results in error message by ATpoint 70k
This cannot be answered. Add your command line and operating system.
Comment: split fasta file to train deep learning model by shenwei356 7.9k
shuffle the sequences, with a rand seed 1. seqkit shuffle --two-pass --rand-seed 1 hairpin.fa -o hairpin.s1.fa testing data …
Comment: split fasta file to train deep learning model by pinheirofabiano ▴ 10
I'm trying to split my file in two, using Seqkit, but it is not working.. using the command sample, I can generate a file that contains 80%…
Comment: split fasta file to train deep learning model by pinheirofabiano ▴ 10
thank you very much for your comment, @Mensur My file is just a list of peptides, not a complete genome
Comment: March 13-16: Virtual Nextflow and nf-core training event in 5 languages by Maxime Garcia ▴ 220
All the videos are now online and organized in 5 different playlists on the nf-core youtube channel: https://www.youtube.com/@nf-core/playl…
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