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107 follow
News: The Biostar Handbook. A bioinformatics e-book for beginners.
training handbook
updated 9 weeks ago by 2.3k • written 7.0 years ago by 99k
122
votes
44
replies
10k
views
24 follow
News: Help Make Biostar Better! Add Your Feedback, Opinions And Suggestions.
meta biostars
updated 6 weeks ago by 41k • written 11.0 years ago by 99k
81
votes
39
replies
7.0k
views
11 follow
News: State Of Biostar - Future Directions (January 2013)
biostars
updated 10 months ago by 41k • written 10.9 years ago by 99k
59
votes
31
replies
4.5k
views
12 follow
News: Example of how bioinformaticians can publish in Scientific Reports (by nature publishing group) using publicly available NGS data
publication NGS
updated 8 months ago by 41k • written 6.9 years ago by 10k
11
votes
25
replies
5.7k
views
15 follow
News: Questions for the NCBI Next Generation Sequencing Online Workshop Can be Posted with the NCBI_NOW Tag
NCBI_NOW
updated 8 months ago by 41k • written 8.2 years ago by ▴ 330
57
votes
24
replies
6.2k
views
14 follow
News: Join us in building a bioinformatics resource: The Biostar Handbook
biostar-handbook
updated 14 months ago by 41k • written 8.2 years ago by 99k
54
votes
24
replies
3.9k
views
12 follow
News: Big news from Microsoft. BASH on windows.
windows
updated 8 months ago by 41k • written 7.7 years ago by ★ 3.2k
24
votes
21
replies
6.9k
views
9 follow
News: Misunderstood parameter of NCBI BLAST
blast alignment
updated 6 months ago by 41k • written 5.2 years ago by ★ 3.4k
45
votes
19
replies
6.2k
views
8 follow
News: Gamestorming For Bioinformatics
gamestorming
updated 9 months ago by 41k • written 11.2 years ago by 28k
15
votes
18
replies
7.8k
views
6 follow
News: New Free Community Tutorial Website For Bioinformatics Learning
ChIP-seq genome snp RNA-seq
updated 9 months ago by 41k • written 10.4 years ago by ▴ 610
10
votes
17
replies
3.1k
views
7 follow
News: Tell us what you think of the ENA browser?
ena
updated 8 months ago by 41k • written 7.1 years ago by ★ 1.8k
51
votes
17
replies
3.7k
views
News: Biostars 3.0 is now under testing. It has groups, charms and other interesting features.
meta biostars
updated 10 months ago by 41k • written 8.7 years ago by 99k
12
votes
17
replies
3.8k
views
6 follow
News: A programming language for living cells [Cello]
dna sequence research language
updated 8 months ago by 41k • written 7.7 years ago by 11k
21
votes
16
replies
5.8k
views
6 follow
News: Pandora's Toolbox - a collection of bioinformatics programs
Assembly alignment RNA-Seq
updated 20 months ago by 41k • written 8.9 years ago by ★ 1.1k
46
votes
16
replies
5.6k
views
12 follow
News: Google announces DeepVariant
genome deep-learning google
updated 6 months ago by 41k • written 6.0 years ago by ▴ 990
48
votes
13
replies
25k
views
10 follow
News: The New Grch38 Human Genome Browser Has Arrived!
ucsc assembly GRCh38 hg38
updated 22 months ago by 41k • written 9.8 years ago by 28k
6
votes
13
replies
1.9k
views
News: Ensembl reduced functionality: 10th March-16th April 2020
BLAT VEP Ensembl service
updated 6 months ago by 41k • written 3.8 years ago by ★ 2.3k
11
votes
13
replies
2.9k
views
News: Ensembl datacentre shut-down: Friday 26th August - Tuesday 30th August 2016
Maintenance Ensembl
updated 8 months ago by 41k • written 7.3 years ago by ★ 2.3k
14
votes
11
replies
2.7k
views
6 follow
News: Announcing bioSyntax: Syntax highlighting for biological files
computational-biology
updated 6 months ago by 41k • written 5.9 years ago by ▴ 170
21
votes
11
replies
9.2k
views
6 follow
News: NovaSeq from Illumina (updated info)
illumina NovaSeq
updated 8 months ago by 41k • written 6.9 years ago by 136k
19
votes
11
replies
6.8k
views
News: Solid Software Tools: Denovo Assembly/Xsq Tools Pipeline Mirrored At Biostar
SOLID
updated 9 months ago by 41k • written 11.3 years ago by 99k
11
votes
11
replies
1.6k
views
8 follow
News: Python Data Visualization Course. Last 3 spots left
next-gen
updated 6 months ago by 41k • written 5.1 years ago by ★ 2.4k
18
votes
11
replies
3.8k
views
News: Full Genome Sequencing Service 30x whole human genome sequencing for $3,490 (project cancelled)
genome next-gen-sequencing
updated 23 months ago by 41k • written 9.2 years ago by ▴ 100
7
votes
11
replies
1.9k
views
News: Bringing the power of Big Data to biomedical researchers
NGS biomedical-research
updated 6 months ago by 41k • written 6.4 years ago by ▴ 100
22
votes
10
replies
5.3k
views
News: samtools/bcftools/htslib 1.0 released
htslib samtools bcftools
updated 24 months ago by 41k • written 9.3 years ago by ★ 2.2k
8
votes
10
replies
3.8k
views
News: New versions of Minia and DSK (2.0.x)
minia dsk assembly gatb
updated 20 months ago by 41k • written 8.8 years ago by ★ 1.5k
11
votes
9
replies
7.4k
views
News: NovaSeq quality analysis
sequencing
updated 7 months ago by 41k • written 6.5 years ago by 20k
17
votes
9
replies
3.7k
views
News: My Ncbi Curriculum Vitae Web Application: Sciencv
ncbi
updated 9 months ago by 41k • written 10.2 years ago by 158k
6
votes
9
replies
4.1k
views
News: 1000 Genomes : The Initial Phase 3 variant list and phased genotypes.
1000genomes
updated 9 months ago by 41k • written 9.5 years ago by 158k
13
votes
9
replies
2.4k
views
7 follow
News: Inviting NEW Biostars moderators to join Biostars slack channel
slack moderator
9 weeks ago by GenoMax 136k
22
votes
9
replies
6.5k
views
News: Epigenetics Workshop - DNA Methylation Data Analysis
bisulfite-sequencing workshop epigenetics
updated 11 months ago by 41k • written 8.5 years ago by 10k
0
votes
9
replies
2.2k
views
News: Practical Genomics: From Biology to Biostatistics Workshop (Baltimore, MD)
workshop
updated 9 months ago by 41k • written 9.5 years ago by 10k
27
votes
9
replies
3.9k
views
News: OSX 10.11 released 30th Sep will be "rootless"
mac osx
updated 15 months ago by 41k • written 8.2 years ago by 13k
8
votes
8
replies
2.7k
views
News: Coronavirus Genome Analysis: a new volume in the Biostar Handbook
biostar-handbook education
updated 6 months ago by 41k • written 3.8 years ago by 99k
7
votes
8
replies
1.7k
views
News: A new Stack Exchange site for Research Computing
unix linux
updated 6 months ago by 41k • written 6.0 years ago by ▴ 690
12
votes
8
replies
6.9k
views
News: rRNA Depletion / Poly-A Selection Responsible for RNA-seq Bias
rRNA-depletion RNA-seq-bias
updated 9 months ago by 41k • written 9.4 years ago by ▴ 640
13
votes
8
replies
2.6k
views
News: NCBI is going to eliminate GI identifiers
ncbi GI
updated 8 months ago by 41k • written 7.7 years ago by ★ 2.9k
7
votes
8
replies
4.0k
views
News: Next-Gen Sequencing Tutorials On Cubelp (Cranfield Bioinformatics Electronic Learning Platform)
genome chip-seq snp assembly
updated 14 months ago by 41k • written 10.3 years ago by ▴ 610
12
votes
8
replies
3.3k
views
News: 'Potential Rna-Dna Binding Site In Alu Repeat', Or 'Why Should I Allow Multiple Mapping Positions When Analyzing Chipseq Data?'
chipseq rna
updated 9 months ago by 41k • written 10.4 years ago by 10k
38
votes
8
replies
1.3k
views
6 follow
News: What happens when a bioinformatician has his own genome sequenced for $300?
DNAseq DNA WGS
updated 5 months ago by 35k • written 5 months ago by 10k
25
votes
7
replies
2.6k
views
6 follow
News: Who qualifies to be a bioinformatician?
resume bioinformatician vc
updated 17 months ago by 41k • written 8.6 years ago by 158k
13
votes
7
replies
5.6k
views
News: Free HiSeq X Ten human genome fastq test data
HiSeq-X-Ten Human-genome Fastq next-gen
updated 2.0 years ago by 41k • written 9.4 years ago by ★ 1.8k
6
votes
7
replies
2.0k
views
News: NCBI wants to remove quality scores from SRA
quality-scores trimming Assembly genome SRA
updated 6 months ago by 41k • written 3.4 years ago by ▴ 40
6
votes
7
replies
5.2k
views
News: Illumina Nextseq 500 And Hiseq X Ten: Newer Tech Lowering Cost Per Mbp
Illumina
updated 9 months ago by 41k • written 9.9 years ago by ▴ 640
25
votes
7
replies
6.1k
views
News: Pubmed Commons : A System That Enables Researchers To Share Their Opinions About Scientific Publications
ncbi pubmed
updated 9 months ago by 41k • written 10.1 years ago by 158k
24
votes
7
replies
4.3k
views
News: #Bioinformatics Crowdcoding
crowd-coding
updated 9 months ago by 41k • written 10.4 years ago by 158k
6
votes
7
replies
3.8k
views
News: New in DiffBind: dba.plotProfile() - Peak profiles and profile heatmaps
DiffBind ChIP-seq deepTools visualization ATAC-seq
15 months ago by Rory Stark ★ 2.0k
17
votes
7
replies
8.9k
views
News: Upcoming NGS Workshop: A Beginner's Guide to NGS Data Analysis
workshop Assembly transcriptomics RNA-Seq
updated 21 months ago by 41k • written 9.1 years ago by 10k
10
votes
7
replies
2.5k
views
News: Linux for Biologists e-book (free to read online)
linux python galaxy conda virtual-machine
2.2 years ago by vimalkvn ▴ 320
12
votes
7
replies
3.7k
views
News: Welcome Ensembl REST with more endpoints!
ensembl rest-api
updated 9 months ago by 41k • written 9.2 years ago by ★ 5.2k
1,000 results • Page 1 of 20
Recent Votes
Answer: protein clustering and pangenome tools
Answer: get gene name from rsID
Answer: get gene name from rsID
Comment: MinKNOW software installation doubt for MinION Nanopore sequencing
Comment: Minimum requirements for a laptop to do rna seq analysis
Best-suited unit of expression to perform between-sample comparison
A: Best-suited unit of expression to perform between-sample comparison
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Recent Replies
Answer: How can I obtain the DNA sequences of each CDS for several genbank files? by Raphaëlle • 0
Hello, Thank you very much for your quick reply. That was indeed the issue! Another question: is there a simple way of automating this …
Answer: Cluster sub-set analysis using Seurat by j.gleixner ▴ 10
There now is also `Seurat::FindSubCluster`
Comment: How can i control the cluster number in scRNASeq clustering by Seurat package by j.gleixner ▴ 10
There is now also Seurat::BuildClusterTree that makes this easier.
Answer: How can i control the cluster number in scRNASeq clustering by Seurat package by j.gleixner ▴ 10
If you want to get a certain number of clusters without resorting to trying different settings for the resolution parameter, you can firs…
Answer: How to speed-up to contruct phylogenetic tree by Nelo ▴ 20
I will also try this `fasttree`
Comment: i ues schicexplorer's hicbuildmatrix code complains that two sam files do not ha by 1125195245 • 0
I tried using bowtie2's --reorder command to output a sam file for each of the two files, and then used both sam files to build the matrix,…
Comment: How to speed-up to contruct phylogenetic tree by Nelo ▴ 20
I used MEGA CC (comand line option) but there is no option to specify threads in its `--help` manual . And default thread is 4
Comment: How to speed-up to contruct phylogenetic tree by Nelo ▴ 20
The average length of fasta sequences is ~300aa length. I can't exclude any sequences as I have to provide them nomenclature aslo on the ba…
Comment: How to speed-up to contruct phylogenetic tree by Nelo ▴ 20
I used Raxml for a trial fasta file of about only 33 sequences as: `raxmlHPC-PTHREADS-AVX -f a -T 80 -m PROTGAMMAWAG -n test1 -s bittergou…
Comment: i ues schicexplorer's hicbuildmatrix code complains that two sam files do not ha by ATpoint 78k
It's bad practice to add the question to the title and only a screenshot as question. The error is clear. Did you try what it suggests, and…
Answer: What apps can read large FASTQ files on Windows? by i.sudbery 18k
There are a number of bioinformatics workbenches that will run under windows, and will allow you to analyse fastq files. Some examples …
Comment: Multi-factor designs in DiffBind by g.persic1991 • 0
Dear Rory, thanks a lot for your help. It's work, indeed now I'm able to find (as expected) more DB. The only things "strange" is that I…
Comment: How to cluster .faa files? by dthorbur ▴ 890
I agree with Joe, it's hard to tell what you want. But here are some general suggestions: 1. [OrthoFinder](https://github.com/davidemms/Ort…
Comment: Is interleaved Fastq files the same as interlaced fastq by Joe 21k
No need to post a comment, you can just edit your original post after the fact
Answer: How to speed-up to contruct phylogenetic tree by Joe 21k
If you really really need speed, you could also look at `fasttree`. AFAIK it has an ML or ML-like function. IQ Tree should be more than fa…
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