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News: Online training - Snakemake: Reproducible and Scalable Bioinformatic Workflows
Snakemake Pipeline
15 months ago by carlopecoraro2 ★ 2.3k
14
votes
4
replies
3.0k
views
News: FULL: NGS Data Analysis Workshop for Beginners in Munich (29 June - 1 Juli 2016)
RNA-Seq next-gen NGS
updated 8 months ago by 38k • written 7.1 years ago by 9.9k
5
votes
4
replies
1.6k
views
News: 2nd International Conference on Pediatric Oncology and Pediatric Medicine
gene News
updated 6.1 years ago by 127k • written 6.1 years ago by • 0
2
votes
4
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1.7k
views
News: Reminder: Igb Tutorial Starts In 30 Minutes
visualization genome-browser RNA-seq
updated 23 days ago by 38k • written 9.5 years ago by ★ 2.3k
31
votes
4
replies
6.1k
views
News: Rosalind: A Novel Bioinformatics Education Platform
education
updated 29 days ago by 38k • written 10.5 years ago by ▴ 310
3
votes
4
replies
2.0k
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News: Training in Metagenomics Data Analysis @NIH, USA, Nov 14 - 17, 2017
metagenomics training microbiome News
5.4 years ago by AABI ▴ 130
6
votes
4
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809
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News: Upcoming online training courses
Python R
19 months ago by carlopecoraro2 ★ 2.3k
4
votes
4
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1.4k
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News: VCFclin working group
vcfclin
updated 17 days ago by 38k • written 8.9 years ago by ▴ 30
10
votes
4
replies
577
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News: RNA-Seq Data Analysis Workshop - Join us in Berlin, Germany from March 27-30, 2023!
NGS transcriptomics workshop
updated 7 days ago by ▴ 30 • written 6 weeks ago by 9.9k
12
votes
4
replies
1.7k
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News: #NGSchool2018 summer school in bioinformatics
NGSchool Nanopore Personalised Medicine News
4.8 years ago by kzkedzierska ▴ 290
10
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4
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2.3k
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News: Ensembl 77 is out
ensembl
updated 14 months ago by 38k • written 8.5 years ago by 23k
15
votes
4
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3.9k
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News: Workshop: Genomic Data Visualization and Interpretation (Berlin, Germany)
R next-gen dataviz GenVisR News
6.0 years ago by carlopecoraro2 ★ 2.3k
15
votes
3
replies
6.4k
views
News: Top Bioinformatics Contributions Of 2013
bioinformatics
updated 22 days ago by 38k • written 9.3 years ago by ★ 1.1k
8
votes
3
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1.6k
views
News: Impact of outdated gene annotations on pathway enrichment analysis
david go ontology pathway enrichment News
6.5 years ago by pld 5.0k
9
votes
3
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3.0k
views
News: New Human Genome Assembly (Grch38) Released
human-genome assembly
updated 21 days ago by 38k • written 9.2 years ago by 153k
5
votes
3
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1.8k
views
News: Nhgri Meeting About Human Variation Analysis Live Streaming [Now Done]
next-gen exome variation
updated 29 days ago by 38k • written 10.5 years ago by 11k
3
votes
3
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2.1k
views
News: Innocentive Challenge: Identify Organisms From A Stream Of Dna Sequences And Get $1,000,000
ngs
updated 27 days ago by 38k • written 9.9 years ago by ▴ 830
4
votes
3
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2.0k
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News: India Recently Started Personal Genome Profiling, Commercially.
genome-profiling
updated 27 days ago by 38k • written 9.9 years ago by ▴ 960
1
vote
3
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485
views
News: NCBI BLAST ClusteredNR database now available for blastx and PSI-BLAST searches
PSI-BLAST blastx BLAST NCBI ClusteredNR
10 weeks ago by PeterC_NCBI ▴ 200
2
votes
3
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340
views
News: NCBI Comparative Genome Viewer now allows searches for genes across aligned assemblies
Browser NCBI Alignments Genome
3 months ago by PeterC_NCBI ▴ 200
7
votes
3
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4.2k
views
News: Pathway Commons 2 - Search And Visualize Public Biological Pathway Information. Single Point Of Access.
api cytoscape
updated 22 days ago by 38k • written 9.3 years ago by ★ 1.2k
2
votes
3
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1.2k
views
News: Bio-On-Magnetic-Beads (BOMB): Open platform for high-throughput nucleic acid extraction and manipulation
rna-seq rna extraction dna extraction Tool News
updated 4.5 years ago by 47k • written 4.5 years ago by ▴ 20
3
votes
3
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739
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News: Want to automate your NGS analyses and create reproducible/scalable pipelines? Join our hands-on Nextflow workshop!
nextflow NGS pipeline
11 months ago by David Langenberger 9.9k
14
votes
3
replies
3.3k
views
News: Updated: Conference/Symposium/Seminar/Workshop alert 2018-2019
bioinformatics symposium seminar conference News
updated 4.4 years ago by ▴ 260 • written 4.8 years ago by 5.7k
22
votes
3
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2.7k
views
News: Biostar: 10,000 Question Milestone
meta
updated 27 days ago by 38k • written 9.8 years ago by 97k
0
votes
3
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336
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News: NCBI update complete. Aspera users please update your client.
NCBI Submissions GenBank
6 weeks ago by PeterC_NCBI ▴ 200
8
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3
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1.5k
views
News: fastp 0.22 released, with new FASTQ deduplication feature.
fastp
updated 18 months ago by 127k • written 19 months ago by ★ 2.4k
7
votes
3
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1.5k
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News: New NCBI Datasets home and documentation pages provide easier access
ncbi gene SARS-CoV-2 genome
updated 23 months ago by 97k • written 23 months ago by ▴ 50
2
votes
3
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2.8k
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News: Summer Course On Analyzing Next-Generation Sequencing Data, June 10-20, Kellog Biological Station, Michigan State University
education
updated 28 days ago by 38k • written 10.1 years ago by 97k
5
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3
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News: Top GitHub repos for biomedicine
GitHub software open source News
4.2 years ago by field.cady ▴ 50
4
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3
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3.0k
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News: CAFE v4.0 available
CAFE phylogenetics News
updated 3.5 years ago by • 0 • written 6.0 years ago by ▴ 150
4
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3
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1.6k
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News: Boston Genomics Hackathon (facilitated by NCBI)
RNA-Seq hackathon NCBI DNA-seq News
7.0 years ago by DCGenomics ▴ 320
0
votes
3
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980
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News: Less Than One Month Remaining until the Submission Deadline for Phase 1 of the NCTR Indel Calling from Oncopanel Sequencing Data Challenge!
oncopanel indel-calling
updated 3 months ago by 38k • written 9 months ago by ▴ 10
5
votes
3
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370
views
News: March 13-16: Virtual Nextflow and nf-core training event in 5 languages
nf-core pipeline Nextflow
updated 3 days ago by ▴ 230 • written 4 weeks ago by 3.4k
0
votes
3
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502
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News: Nvidia Clara Parabricks is FREE for R&D
nvidia workflow gpu
updated 3 months ago by 2.6k • written 3 months ago by 153k
0
votes
3
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2.5k
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News: Physalia-courses: 16S rRNA gene Metabarcoding Workshop
SNP gene rna-seq sequencing sequence News
4.5 years ago by carlopecoraro2 ★ 2.3k
4
votes
3
replies
1.7k
views
News: How the strengths of Lisp-family languages facilitate building complex and flexible bioinformatics applications
RNA-Seq ChIP-Seq News
6.2 years ago by Bohdan Khomtchouk ▴ 350
6
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3
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2.1k
views
News: Become a Professional Biinformatician in NGS, Microarray in very fair price. Register for ArrayGen training program as soon as possible to get good a…
RNA-Seq ChIP-Seq next-gen News
updated 6.1 years ago by 18k • written 6.1 years ago by • 0
0
votes
3
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2.0k
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News: Bioinformatics National Certification Examination (BINC)
BINC EXAM News
updated 6.9 years ago by 23k • written 6.9 years ago by • 0
1
vote
3
replies
894
views
News: 4th Berlin Summer School in NGS Data Analysis - October 5-9, 2020
NGS RNA-Seq DNA-Seq News
2.8 years ago by David Langenberger 9.9k
20
votes
3
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2.3k
views
News: Nature Comment: Core services: Reward bioinformaticians
career-path
updated 9 months ago by 38k • written 8.0 years ago by ★ 2.2k
2
votes
3
replies
1.7k
views
News: PDX Models: Tumor-stroma interaction
ChIP-Seq R pdx transcriptome News
5.7 years ago by Pine Biotech ▴ 70
3
votes
3
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3.6k
views
News: A Tale Of Next Generation Sequencing Platforms: Ion Torrent, Pacific Biosciences And Illumina Miseq
sequencing
updated 4 weeks ago by 38k • written 10.6 years ago by 97k
0
votes
3
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2.1k
views
News: Eukaryotic Metabarcoding workshop
blast alignment next-gen News
6.3 years ago by carlopecoraro2 ★ 2.3k
4
votes
3
replies
1.7k
views
News: Proteomics and Genomics Submit your Research Journals
Research Genomics Journals Proteomics
updated 3 months ago by 38k • written 7.7 years ago by • 0
2
votes
3
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1.4k
views
News: GCCBOSC 2018: A Bioinformatics Community Conference Call for Abstracts
BOSC GCC Galaxy Community Conference News
5.1 years ago by Chris Fields ★ 2.2k
18
votes
3
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2.2k
views
News: LAST CALL: Next-Generation Sequencing Data Analysis: A Practical Introduction (Frankfurt, Germany) - 2 seats left
DNA-Seq NGS Workshop Variant-Calling
updated 8 months ago by 38k • written 6.1 years ago by 9.9k
3
votes
3
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1.8k
views
News: Workshop: Berlin. Data manipulation and visualization with Python. 13-17 March (Registration deadline is today!!)
SNP next-gen RNA-Seq genome News
6.2 years ago by carlopecoraro2 ★ 2.3k
5
votes
3
replies
1.3k
views
News: Bioinfo-Core Conference Call, October 17, 2017 (11 am EDT USA, local times around world)
bioinfo-core
updated 2 days ago by 38k • written 5.6 years ago by 127k
0
votes
3
replies
807
views
News: EMBO | EMBL Symposium: Seeing is Believing - Imaging the Molecular Processes of Life
image analysis News
4.4 years ago by EMBL Events • 0
1,000 results • Page 3 of 20
Recent Votes
Comment: TSS of protein coding genes
Comment: How to find promoter sequence of a gene?
Answer: BCFtools for somatic vs. germline variant calling
Answer: How to generate GFF/GTF file from cDNA transcipts FASTA file?
Comment: bioinformatics problems solved by graphs data structure
Comment: bioinformatics problems solved by graphs data structure
Answer: How to analize multiple letters codes in COG IDs?
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Recent Replies
Comment: how to get to a VCF from bam files by Ram 38k
Read my script - change your bcftools to output VCF, not BCF. File size (as long as it's >0) is not an indicator of anything significant. …
Comment: how to get to a VCF from bam files by Human • 0
Thanks a lot GenoMax and Ram! After a short look into that manual https://samtools.github.io/bcftools/howtos/variant-calling.html I went w…
Answer: BCFtools for somatic vs. germline variant calling by Ram 38k
bcftools does not differentiate. It calls variant loci. I don't think there's a single variant caller that calls both germline and somatic …
Comment: What means this Error when running a script in python?? by Ram 38k
Please format your code properly the next time. I've seen people use wrong formatting options to a reasonable extent, but your formatting w…
Comment: Gaia CNV error TCGA data by Ram 38k
1. Don't use people's names as tags. 2. Format your post properly. I've done what I can for now. 3. Add a link to "the tutorial from @kevin…
Comment: bioinformatics problems solved by graphs data structure by lieven.sterck 14k
et mon français est assez bien pour comprendre ce que tu as écrit la ;-)
Comment: How to analize multiple letters codes in COG IDs? by Constanza • 0
Thanks for answering so fast, it was very helpful. I shouldn't pay much attention to if COGs are separated by a comma or not then. As long…
Comment: bioinformatics problems solved by graphs data structure by lieven.sterck 14k
well, because this is not you guys' private forum, there are other people participating (not native french speaking) , just to give a reaso…
Answer: How to get gene from PSIBLAST resuts by lieven.sterck 14k
what you likely will need to do: 1. get the ID of the protein that you are interested in (out of result from PSIBLAST) 2. lookup that ID…
Answer: How to analize multiple letters codes in COG IDs? by Mensur Dlakic ★ 23k
The meaning of individual letters is described in a well-known COG functional code: https://ecoliwiki.org/colipedia/index.php/Clusters_o…
Comment: How to find promoter sequence of a gene? by sunyeping ▴ 40
The organism is mice.
Answer: How to generate GFF/GTF file from cDNA transcipts FASTA file? by Pierre Lindenbaum 153k
BLAT your cDNAs to the reference. This should be a PSL file that can be converted to a psl->gff3 converter (e.g: https://github.com/gperte…
Comment: RNAseq: same reads + more complete scaffold = fewer DEGs? by Darked89 4.2k
You may try to check what happened with DEGs obtained using the 300 fragments assembly by getting the sequences of these genes and comparin…
Comment: ExomeDepth installation error by Medha • 0
Thanks, that did work. Also in next steps, there are some arguments like bam.files, I was wondering do we require to have multiple bam fil…
Comment: ExomeDepth installation error by jared.andrews07 ★ 14k
No idea, I don't use databricks. I'd read the docs, find a local expert to help you out, or contact their support, likely in that order.
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