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News: Bioconductor Development Visualization
bioconductor
updated 21 months ago by 43k • written 9.0 years ago by 26k
5
votes
4
replies
1.9k
views
News: 2nd International Conference on Pediatric Oncology and Pediatric Medicine
gene
updated 12 months ago by 43k • written 7.1 years ago by • 0
2
votes
4
replies
1.5k
views
News: Online training - Snakemake: Reproducible and Scalable Bioinformatic Workflows
Snakemake Pipeline
2.4 years ago by carlopecoraro2 ★ 2.5k
3
votes
4
replies
2.0k
views
News: OmicCircos was updated
R OmicCircos
updated 23 months ago by 43k • written 9.1 years ago by ▴ 50
9
votes
4
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1.6k
views
News: Human Cell Atlas Data Coordination Platform Data Release Questionaire
RNA-Seq
updated 11 months ago by 43k • written 6.2 years ago by ★ 1.8k
0
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4
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1.0k
views
News: Pan-Structural Variation hackathon in the Cloud!
SV sequencing
updated 10 months ago by 43k • written 4.2 years ago by 9.7k
7
votes
4
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2.7k
views
News: Boston Ma Us Area Folks: Software Carpentry Workshop For Women In Science Coming Up
python training
updated 14 months ago by 43k • written 11.0 years ago by 11k
4
votes
4
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1.9k
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News: 12th International Conference on Advancements in Bioinformatics and Drug Discovery
genome Computational-Biology
updated 11 months ago by 43k • written 6.0 years ago by ▴ 20
6
votes
4
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4.3k
views
News: awesome-single-cell: a list of open-source single-cell analysis software and workshop materials
single-cell RNA-Seq
updated 12 months ago by 43k • written 7.8 years ago by 26k
10
votes
4
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983
views
News: Good morning
good morning
updated 19 months ago by 100k • written 19 months ago by 87k
15
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4
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4.7k
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News: Workshop: Genomic Data Visualization and Interpretation (Berlin, Germany)
dataviz GenVisR next-gen R
updated 12 months ago by 43k • written 7.1 years ago by ★ 2.5k
2
votes
4
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2.0k
views
News: Reminder: Igb Tutorial Starts In 30 Minutes
visualization genome-browser RNA-seq
updated 14 months ago by 43k • written 10.6 years ago by ★ 2.4k
9
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4
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2.5k
views
7 follow
News: fastp 0.22 released, with new FASTQ deduplication feature.
fastp
updated 9 months ago by 43k • written 2.7 years ago by ★ 2.5k
6
votes
4
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1.7k
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News: Genomic variation course at the EBI - Updated
Ensembl 1000Genomes snps variation
updated 12 months ago by 43k • written 8.1 years ago by 23k
1
vote
4
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1.5k
views
News: Spring School for RNA-seq Sequence Analysis
RNA-Seq genome sequence sequencing
updated 12 months ago by 43k • written 7.2 years ago by ▴ 10
12
votes
4
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2.0k
views
News: #NGSchool2018 summer school in bioinformatics
NGSchool Personalised-Medicine Nanopore
updated 11 months ago by 43k • written 5.9 years ago by ▴ 290
0
votes
3
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1.0k
views
News: EMBO | EMBL Symposium: Seeing is Believing - Imaging the Molecular Processes of Life
image-analysis
updated 11 months ago by 43k • written 5.5 years ago by ▴ 10
2
votes
3
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3.1k
views
News: Summer Course On Analyzing Next-Generation Sequencing Data, June 10-20, Kellog Biological Station, Michigan State University
education
updated 14 months ago by 43k • written 11.2 years ago by 100k
5
votes
3
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2.1k
views
News: Nhgri Meeting About Human Variation Analysis Live Streaming [Now Done]
next-gen exome variation
updated 14 months ago by 43k • written 11.6 years ago by 11k
5
votes
3
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1.5k
views
News: Bioinfo-Core Conference Call, October 17, 2017 (11 am EDT USA, local times around world)
bioinfo-core
updated 13 months ago by 43k • written 6.7 years ago by 141k
5
votes
3
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904
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News: March 13-16: Virtual Nextflow and nf-core training event in 5 languages
nf-core pipeline Nextflow
updated 13 months ago by ▴ 340 • written 14 months ago by 4.5k
0
votes
3
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1.1k
views
News: Nvidia Clara Parabricks is FREE for R&D
nvidia workflow gpu
updated 16 months ago by 2.8k • written 16 months ago by 161k
0
votes
3
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1.4k
views
News: :: FINAL CALL :: A Practical Introduction to NGS Data Analysis (Nov 29 - Dec 1, 2023 in Munich, Germany) - only 2 seats left
DNA-Seq NGS RNA-Seq Workshop
5 months ago by David Langenberger 11k
4
votes
3
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1.9k
views
News: How the strengths of Lisp-family languages facilitate building complex and flexible bioinformatics applications
ChIP-Seq RNA-Seq
updated 12 months ago by 43k • written 7.3 years ago by ▴ 350
3
votes
3
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1.0k
views
News: Want to automate your NGS analyses and create reproducible/scalable pipelines? Join our hands-on Nextflow workshop!
nextflow NGS pipeline
2.0 years ago by David Langenberger 11k
3
votes
3
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1.2k
views
News: NCBI's IgBLAST version 1.21.0 is now available
IgBLAST BLAST T-Cell NCBI receptors
11 months ago by PeterC_NCBI ▴ 410
20
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3
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2.7k
views
News: Nature Comment: Core services: Reward bioinformaticians
career-path
updated 22 months ago by 43k • written 9.1 years ago by ★ 2.2k
14
votes
3
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3.7k
views
News: Updated: Conference/Symposium/Seminar/Workshop alert 2018-2019
seminar symposium conference
updated 11 months ago by 43k • written 5.9 years ago by 5.8k
9
votes
3
replies
4.8k
views
News: Bioinformatics Contest 2020. Call for problems
contest
updated 10 months ago by 43k • written 4.6 years ago by ▴ 920
3
votes
3
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2.3k
views
News: Innocentive Challenge: Identify Organisms From A Stream Of Dna Sequences And Get $1,000,000
ngs
updated 14 months ago by 43k • written 11.0 years ago by ▴ 830
2
votes
3
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1.7k
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News: GCCBOSC 2018: A Bioinformatics Community Conference Call for Abstracts
Galaxy-Community-Conference BOSC GCC
updated 11 months ago by 43k • written 6.2 years ago by ★ 2.2k
0
votes
3
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2.8k
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News: Physalia-courses: 16S rRNA gene Metabarcoding Workshop
RNA-seq sequencing SNP gene sequence
updated 12 months ago by 43k • written 7.5 years ago by ★ 2.5k
12
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3
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2.4k
views
News: Google Summer of Code and Open Bioinformatics Foundation is looking for students
GSoC open-source
updated 12 months ago by 43k • written 8.1 years ago by 8.3k
4
votes
3
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1.0k
views
News: You may need to cleanup duplicate NCBI BLAST nt database volumes on your system
databases NCBI BLAST
8 months ago by PeterC_NCBI ▴ 410
1
vote
3
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915
views
News: NCBI BLAST ClusteredNR database now available for blastx and PSI-BLAST searches
PSI-BLAST blastx BLAST NCBI ClusteredNR
15 months ago by PeterC_NCBI ▴ 410
22
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3
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3.0k
views
News: Biostar: 10,000 Question Milestone
meta
updated 14 months ago by 43k • written 10.9 years ago by 100k
4
votes
3
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1.9k
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News: Proteomics and Genomics Submit your Research Journals
Research Genomics Journals Proteomics
updated 17 months ago by 43k • written 8.8 years ago by • 0
0
votes
3
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1.2k
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News: Less Than One Month Remaining until the Submission Deadline for Phase 1 of the NCTR Indel Calling from Oncopanel Sequencing Data Challenge!
oncopanel indel-calling
updated 16 months ago by 43k • written 22 months ago by ▴ 10
0
votes
3
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2.4k
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News: Eukaryotic Metabarcoding workshop
next-gen blast alignment
updated 12 months ago by 43k • written 7.4 years ago by ★ 2.5k
0
votes
3
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872
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News: NCBI update complete. Aspera users please update your client.
NCBI Submissions GenBank
14 months ago by PeterC_NCBI ▴ 410
18
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3
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2.5k
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News: LAST CALL: Next-Generation Sequencing Data Analysis: A Practical Introduction (Frankfurt, Germany) - 2 seats left
DNA-Seq NGS Workshop Variant-Calling
updated 21 months ago by 43k • written 7.2 years ago by 11k
2
votes
3
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1.4k
views
News: Bio-On-Magnetic-Beads (BOMB): Open platform for high-throughput nucleic acid extraction and manipulation
rna-extraction dna-extraction rna-seq
updated 11 months ago by 43k • written 5.6 years ago by ▴ 20
4
votes
3
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3.3k
views
News: CAFE v4.0 available
phylogenetics CAFE
updated 11 months ago by 43k • written 7.1 years ago by ▴ 150
7
votes
3
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3.9k
views
News: Visualizing genomic data: techniques and challenges. Our interview with Dr. Malachi Griffith, Dr. Obi Griffith and Mr. Zachary Skidmore (The Griffith…
R RNA-Seq genome NGSdata
updated 11 months ago by 43k • written 6.8 years ago by ★ 2.5k
1
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3
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1.2k
views
News: 4th Berlin Summer School in NGS Data Analysis - October 5-9, 2020
NGS RNA-Seq DNA-Seq
updated 10 months ago by 43k • written 4.2 years ago by 11k
2
votes
3
replies
2.1k
views
News: PDX Models: Tumor-stroma interaction
transcriptome pdx R ChIP-Seq
updated 11 months ago by 43k • written 6.8 years ago by ▴ 70
2
votes
3
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708
views
News: NCBI Comparative Genome Viewer now allows searches for genes across aligned assemblies
Browser NCBI Alignments Genome
16 months ago by PeterC_NCBI ▴ 410
7
votes
3
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4.6k
views
News: Pathway Commons 2 - Search And Visualize Public Biological Pathway Information. Single Point Of Access.
api cytoscape
updated 14 months ago by 43k • written 10.4 years ago by ★ 1.2k
3
votes
3
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3.9k
views
News: A Tale Of Next Generation Sequencing Platforms: Ion Torrent, Pacific Biosciences And Illumina Miseq
sequencing
updated 14 months ago by 43k • written 11.7 years ago by 100k
7
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3
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1.9k
views
News: New NCBI Datasets home and documentation pages provide easier access
ncbi gene SARS-CoV-2 genome
updated 3.0 years ago by 100k • written 3.0 years ago by ▴ 50
1,000 results • Page 3 of 20
Recent Votes
Answer: Figures are disappeared from html report of SnpEff
Comment: How to trim transcripts using information from NCBI contamination screen report
Filtering rRNA contamination (indicated by GC content plots) from RNA-seq data
Filtering rRNA contamination (indicated by GC content plots) from RNA-seq data
A: What is the VEP Impact column?
is oxford nanopore technology data paired or single end sequencing?
is oxford nanopore technology data paired or single end sequencing?
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Recent Replies
Comment: Is it possible to get a list of representative genomes from a past RefSeq releas by GenoMax 141k
At this point you should email NCBI help desk and ask them this question. If you get an answer then please post it back in this thread.
Comment: Figures are disappeared from html report of SnpEff by Pierre Lindenbaum 161k
the javascript in your html is deprecated or your firefox is just tool old.
Comment: Why gatk VariantAnnotator required bam and coverage files by Pierre Lindenbaum 161k
> I would like to ask why they may require the bam file for this function? hum.. if you want to add the coverage, where do you think gatk …
Comment: Figures are disappeared from html report of SnpEff by analyst ▴ 30
By following above approach I got this ![enter image description here][1] [1]: /media/images/b47490eb-d4c4-4f39-a7b2-f5b7b6b8
Comment: Highest variable features in single cell data by Kazo • 0
I apologize for the confusion. What I meant to say is that, for example, the Trbv17 gene appears among the variable genes. However, when I …
Answer: why renaming Idents in Seurat object doesn't work? by Assa Yeroslaviz ★ 1.8k
I manage to find a workwround, but I don't understand what I did wrong here. my solution was to extract the cluster column as vector and…
Answer: Finding orthologs between genome error by Adrian Altenhoff ★ 1.1k
Hi, thanks for letting us know. In a recent software update, we introduced a problem with the written splice information in the cached …
Comment: Fetch table from clinvar database according to a list of rsid by ashaneev07 ▴ 20
so which one should i prefer? i don't need the entire results i need the condition-Germline table only. (for eg:-from, https://www.ncbi.nlm…
Comment: To get p-values for the TPM by dsull ★ 5.8k
OK, not sure why your intention is to use RSEM p-values for, but at least tell us the commands you ran then otherwise how are we supposed t…
Comment: Fetch table from clinvar database according to a list of rsid by Pierre Lindenbaum 161k
> Don't forget to follow up on your threads. If an answer was helpful, you should upvote it; if the answer resolved your question, you shou…
Comment: different FeatureCounts output for the same data by sehriban.buyukkilic ▴ 10
Sure, I'll inquire about the version of Rsubread. I'll keep you posted if it works :) Thanks
Comment: different FeatureCounts output for the same data by sehriban.buyukkilic ▴ 10
Yeah, let me show you my featureCounts result, it looks like this. It's too low. [1]: /media/images/eb8293fe-e6ae-4b02-92e2-0ba2075b
Comment: Adding CB tag to bam file by Pierre Lindenbaum 161k
samtools addreplacerg is for read groups. This is not what OP asked.
Comment: Adding CB tag to bam file by Maria • 0
When I try ``` samtools addreplacerg -r "@CB\tID:$cell" -o $cell.bam $LINE``` the CB tag gets add to the header, but the tag in every line …
Answer: Figures are disappeared from html report of SnpEff by Pierre Lindenbaum 161k
the remote website providing the javascript or/and the images is down or you're now behind a proxy. Check the firefox console: https://fire…
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