Latest
Open
Jobs
Tutorials
Tags
About
FAQ
Community
Planet
New Post
Log In
New Post
Latest
Open
News
Jobs
Tutorials
Forum
Tags
Planet
Users
Log In
Sign Up
About
Limit : all time
all time
today
this week
this month
this year
1,000 results • Page
4 of 20
Sort: replies
Rank
Views
Votes
Replies
3
votes
3
replies
2.3k
views
News:
Innocentive Challenge: Identify Organisms From A Stream Of Dna Sequences And Get $1,000,000
ngs
updated 13 months ago by
Ram
43k • written 10.9 years ago by
bioinfo
▴ 830
0
votes
3
replies
827
views
News:
NCBI update complete. Aspera users please update your client.
NCBI
Submissions
GenBank
13 months ago by
PeterC_NCBI
▴ 410
0
votes
3
replies
1.0k
views
News:
EMBO | EMBL Symposium: Seeing is Believing - Imaging the Molecular Processes of Life
image-analysis
updated 10 months ago by
Ram
43k • written 5.4 years ago by
EMBL Events
▴ 10
9
votes
3
replies
4.8k
views
News:
Bioinformatics Contest 2020. Call for problems
contest
updated 9 months ago by
Ram
43k • written 4.5 years ago by
alserg
▴ 900
4
votes
3
replies
1.9k
views
News:
How the strengths of Lisp-family languages facilitate building complex and flexible bioinformatics applications
ChIP-Seq
RNA-Seq
updated 11 months ago by
Ram
43k • written 7.2 years ago by
Bohdan Khomtchouk
▴ 350
2
votes
3
replies
2.0k
views
News:
PDX Models: Tumor-stroma interaction
transcriptome
pdx
R
ChIP-Seq
updated 10 months ago by
Ram
43k • written 6.7 years ago by
Pine Biotech
▴ 70
4
votes
3
replies
1.0k
views
News:
You may need to cleanup duplicate NCBI BLAST nt database volumes on your system
databases
NCBI
BLAST
7 months ago by
PeterC_NCBI
▴ 410
6
votes
3
replies
2.4k
views
News:
Become a Professional Biinformatician in NGS, Microarray in very fair price. Register for ArrayGen training program as soon as possible to get good a…
ChIP-Seq
next-gen
RNA-Seq
updated 11 months ago by
Ram
43k • written 7.2 years ago by
Seema
• 0
0
votes
3
replies
1.0k
views
News:
Nvidia Clara Parabricks is FREE for R&D
nvidia
workflow
gpu
updated 15 months ago by
4galaxy77
2.8k • written 15 months ago by
Pierre Lindenbaum
160k
2
votes
3
replies
1.6k
views
News:
GCCBOSC 2018: A Bioinformatics Community Conference Call for Abstracts
Galaxy-Community-Conference
BOSC
GCC
updated 10 months ago by
Ram
43k • written 6.1 years ago by
Chris Fields
★ 2.2k
6
votes
2
replies
2.1k
views
News:
RNA-Seq Data Analysis Workshop in Leipzig, Germany (09 - 12 October 2017)
NGS
RNA-Seq
workshop
updated 10 months ago by
Ram
43k • written 6.7 years ago by
David Langenberger
11k
1
vote
2
replies
1.7k
views
News:
Webinar: Generating interpretable maps of single cell chromatin accessibility and RNA-seq datasets with Similarity Weighted Nonnegative Embedding
scRNAseq
webinar
rna-seq
single-cell
updated 10 months ago by
Ram
43k • written 4.9 years ago by
sonpham
▴ 580
13
votes
2
replies
1.5k
views
News:
Thank you Biostars!
meta
updated 10 months ago by
Ram
43k • written 4.9 years ago by
Glory Basumata
▴ 140
1
vote
2
replies
1.8k
views
News:
Making efficient NGS data analysis softwares - GATB-Core Library Tutorial
next-gen
GATB
updated 11 months ago by
Ram
43k • written 7.5 years ago by
patrick.durand
▴ 140
0
votes
2
replies
2.6k
views
News:
PART FUNDED SCHOLARSHIPS - Coding, data management, and Shiny applications using RStudio for evolutionary biologists and ecologists - May 2017
Rstudio
R
Shiny
updated 10 months ago by
Ram
43k • written 7.0 years ago by
oliverhooker
▴ 110
6
votes
2
replies
2.5k
views
News:
Interested in de novo transcriptome assembly using Trinity? Check out our interview to Brian Haas
alignment
RNA-Seq
updated 11 months ago by
Ram
43k • written 7.1 years ago by
carlopecoraro2
★ 2.4k
6
votes
2
replies
1.5k
views
News:
Biostars On The Genome Technology Cover
biostars
updated 13 months ago by
Ram
43k • written 11.2 years ago by
Istvan Albert
100k
2
votes
2
replies
1.6k
views
News:
User-friendly Bioinformatics From RNA Seq to Biological Interpretation
machine-learning
RNA-seq
updated 10 months ago by
Ram
43k • written 5.7 years ago by
sahil
▴ 10
0
votes
2
replies
2.5k
views
News:
MinION Community Meeting: Thursday Dec 3rd (now live)
minion
updated 19 months ago by
Ram
43k • written 8.3 years ago by
Istvan Albert
100k
6
votes
2
replies
2.2k
views
News:
Galaxy-specific Biostar Instance
galaxy
biostars
updated 13 months ago by
Ram
43k • written 9.9 years ago by
martenson
▴ 380
2
votes
2
replies
1.3k
views
News:
Course: Applied Statistics and Bioinformatics with R and Bioconductor. (Berlin, 22-26 January 2018)
R
next-gen-sequencing
updated 10 months ago by
Ram
43k • written 6.4 years ago by
carlopecoraro2
★ 2.4k
8
votes
2
replies
2.3k
views
News:
The bioinformatics chat is a new podcast about bioinformatics. In the first episode we discuss Scallop, a transcriptome assembler
podcast
Assembly
RNA-Seq
updated 10 months ago by
Ram
43k • written 7.0 years ago by
roma
▴ 120
7
votes
2
replies
2.3k
views
News:
Annotation of Zebrafish pri-miRNAs promoters and CAGE-seq detected active Drosha processing events.
Drosha-processing
moRNAs
pri-miRNAs
zebrafish
updated 20 months ago by
Ram
43k • written 8.3 years ago by
Chirag Nepal
★ 2.4k
1
vote
2
replies
871
views
News:
Online training - Introduction to Nextflow
Bionfirmatics
Pipeline
Workflow
Netflow
19 months ago by
carlopecoraro2
★ 2.4k
8
votes
2
replies
560
views
News:
LAST CALL - Single-Cell RNA-Seq Data Analysis: A Practical Introduction (May 6-8, 2024 in Berlin)
single-cell
sequencing
22 days ago by
David Langenberger
11k
6
votes
2
replies
2.6k
views
News:
RNA-Seq Data Analysis Workshop in Berlin, Germany (full)
NGS
RNA-Seq
workshop
updated 11 months ago by
Ram
43k • written 7.3 years ago by
David Langenberger
11k
4
votes
2
replies
1.3k
views
News:
Hands-On Workshop: How to use bisulfite-treated sequencing to study DNA methylation (BS-Seq, Bisulfite-Seq, WGBS)
Workshop
methylation
bisulfite
updated 9 months ago by
Ram
43k • written 4.5 years ago by
Lars
★ 1.0k
0
votes
2
replies
1.3k
views
News:
:: FINAL CALL :: Next-Generation Sequencing Data Analysis: A Practical Introduction (December 12-14, 2022 in Munich, Germany)
rnaseq
dnaseq
sequencing
ngs
workshop
16 months ago by
David Langenberger
11k
2
votes
2
replies
1.9k
views
News:
BioC 2015, Bioconductor Annual Conference, July 20-22, Seattle, WA
Bioconductor
Conference
updated 21 months ago by
Ram
43k • written 8.9 years ago by
Martin Morgan
★ 1.6k
2
votes
2
replies
1.1k
views
News:
Bioinformatics Solutions on AWS
Cloud
AWS
updated 2.8 years ago by
Ram
43k • written 2.9 years ago by
Jillian
▴ 20
0
votes
2
replies
1.6k
views
News:
Free Webinar: Sequence alignment: the central step in reference based Next Generation Sequencing data analysis
next-gen
SAM
alignment
sangenix
updated 11 months ago by
Ram
43k • written 7.2 years ago by
Persistent LABS
▴ 750
5
votes
2
replies
4.7k
views
News:
GeneSCF (Gene Enrichment Tool): Advice to users
kegg
GeneSCF
GO
annotation
updated 13 months ago by
Ram
43k • written 7.2 years ago by
EagleEye
7.5k
1
vote
2
replies
1.3k
views
News:
Webinar on Diagnosis of Rare Diseases using NGS Based Multi-gene Testing- Case studies by Dr.Aparna Ganapathy on 18 Apr 2018
variant-calling
rare-disease
dna-seq
strand-ngs
updated 10 months ago by
Ram
43k • written 6.0 years ago by
Genomics
▴ 70
2
votes
2
replies
489
views
News:
Unix and Shell Scripting for Bioinformatics course
Bash
Unix
Shell-Scripting
3 months ago by
carlopecoraro2
★ 2.4k
0
votes
2
replies
1.7k
views
News:
2 Days Hands on Workshop on Transcriptome-Seq Data Analysis
RNA-Seq
sequencing
SNP
Assembly
updated 10 months ago by
Ram
43k • written 6.8 years ago by
clovergenls
• 0
8
votes
2
replies
890
views
News:
Save time and money through improved onboarding of your NGS data scientists
NGS
data-analysis
updated 12 months ago by
Ram
43k • written 4.2 years ago by
David Langenberger
11k
4
votes
2
replies
2.8k
views
News:
New ebook: From cell line to Command line to learn computational biology
unix
snakemake
computational-biology
RNA-seq
4 months ago by
Ming Tommy Tang
★ 3.9k
5
votes
2
replies
3.7k
views
News:
Tuesday 10/29 Live Tour Of New Features In Integrated Genome Browser 8
genome-browser
RNA-seq
ChIP-seq
updated 13 months ago by
Ram
43k • written 10.4 years ago by
Ann
★ 2.4k
0
votes
2
replies
675
views
News:
Reduced functionality of Ensembl and Ensembl Genomes on the 13th November
ensembl
updated 9 months ago by
Ram
43k • written 4.4 years ago by
Emily
23k
1
vote
2
replies
647
views
News:
Course: Network Analysis in R
NetworkAnalyis
R
14 months ago by
carlopecoraro2
★ 2.4k
5
votes
2
replies
1.5k
views
News:
Google Dataset Search
google
updated 10 months ago by
Ram
43k • written 5.6 years ago by
Pierre Lindenbaum
160k
3
votes
2
replies
2.6k
views
News:
Samtools/htslib v1.2 released
htslib
samtools
bcftools
updated 12 months ago by
Ram
43k • written 9.2 years ago by
Devon Ryan
104k
1
vote
2
replies
1.7k
views
News:
NCBI Datasets - try it out!
Assembly
refseq
genome
ncbi
updated 9 months ago by
Ram
43k • written 4.0 years ago by
vkkodali_ncbi
★ 3.7k
3
votes
2
replies
1.2k
views
News:
Course "Data Crunching: from hell to heaven", Udine, Italy, 25-27 July, 2018
NGS
next-generation-sequencing
updated 10 months ago by
Ram
43k • written 5.8 years ago by
Fabio Marroni
★ 3.0k
0
votes
2
replies
1.6k
views
News:
M.Phil Program in Bioinformatics
education
career
updated 12 months ago by
Ram
43k • written 8.4 years ago by
rrojha143
• 0
1
vote
2
replies
738
views
News:
Ensembl reduced functionality, early March
ensembl
updated 9 months ago by
Ram
43k • written 4.2 years ago by
Emily
23k
11
votes
2
replies
3.7k
views
News:
Coursera: Computational Molecular Evolution
course
updated 13 months ago by
Ram
43k • written 10.9 years ago by
Pierre Lindenbaum
160k
2
votes
2
replies
632
views
News:
Gene Set Enrichment Analysis in R/Bioconductor
Gene-Set-Enrichment-Analysis
R
Cancer-Genomics
GSEA
17 months ago by
carlopecoraro2
★ 2.4k
2
votes
2
replies
2.7k
views
News:
ENCODE 2015: Research Applications and Users Meeting
workshop
mouse-encode
encode
updated 12 months ago by
Ram
43k • written 8.8 years ago by
Alex Reynolds
35k
6
votes
2
replies
1.1k
views
News:
Temporarily reduced functionality of Ensembl and Ensembl Genomes
Ensembl
updated 10 months ago by
Ram
43k • written 5.1 years ago by
Ben_Ensembl
★ 2.3k
1,000 results • Page
4 of 20
Recent Votes
Comment: Volcano Plot Output Inquiry: Graphs Facing Down
Comment: Gene reads all zero for each sample
Comment: Gene reads all zero for each sample
A: What Is The Sequencing 'Depth' ?
A: Read Duplicates
A: Read Duplicates
How can two contradicted gene sets be enriched in a cancer sample in GSEA analysis?
Recent Locations •
All
United Kingdom,
just now
United States,
just now
Gainesville, FL,
1 minute ago
United States,
4 minutes ago
Concord NC USA,
6 minutes ago
Stony Brook University, NY,
6 minutes ago
Palau,
7 minutes ago
Recent Awards •
All
Appreciated
to
Ann
★ 2.4k
Commentator
to
Devon Ryan
104k
Popular Question
to
amitpande74
▴ 20
Scholar
to
Pierre Lindenbaum
160k
Popular Question
to
beacamara
• 0
Popular Question
to
blur
▴ 280
Popular Question
to
ATpoint
81k
Recent Replies
Comment: Volcano Plot Output Inquiry: Graphs Facing Down
by
dariober
14k
Perhaps more concerning is why you have features (genes?) with small pvalue but fold-change very close to zero. It's also unusual that ther…
Comment: Gene reads all zero for each sample
by
DYLAN NICO
• 0
Thank you for the suggestions. Unfortunately I cannot add any details for lack of information. But I will try using a different alignment a…
Comment: struggle to get fasta files from ucsc goldenPath
by
Lila M
★ 1.2k
They are +ve and -ve strands, but identical two by two ... I can filter that out later on. This is probably a very naive question, but what…
Comment: Gene reads all zero for each sample
by
ATpoint
81k
Do I understand correctly that you have one gene you are interested in, but all counts are zero, right? If so, first thing could be to use …
Answer: ONT direct RNA sequencing
by
joe
▴ 470
You should use `cat` on .gz files, part of the magic of .gz ...I guess if you use `zcat` they are unzipped and this is why you get the erro…
Comment: Nanopore data filtering using fastp
by
emilydolivo97
• 0
thank you !!
Answer: Can I have multiple active GDC download tokens?
by
Zhenyu Zhang
★ 1.1k
You can only have one active token at a time, but you can copy the same token as many times as you want and use them in different computers…
Comment: Parsing fasta file by coordinates
by
sorrymouse
▴ 120
Yes, thats correct. A lot of the responses are addressing problems other than the one I have - I don't want to cluster the sequences based …
Comment: struggle to get fasta files from ucsc goldenPath
by
GenoMax
140k
Not sure if I am missing something but you want 4 copies of the same sequence with a different fasta header?
Comment: Normalization strategies for comparing mapped reads across samples in RNA-seq
by
Ram
43k
> TPM seems like a good method, but it may not be suitable here because it requires gene/transcript length. Also because TPM cannot be com…
Comment: FindAllMarkers not working (Error (data layers are not joined. Please run JoinL
by
Nitin
• 0
I did run the `JoinLayers()` even then it is not working, here is the output before and after ```r DefaultAssay(combined1) <- 'RNA' com…
Comment: FindAllMarkers not working (Error (data layers are not joined. Please run JoinL
by
Nitin
• 0
I tried that too. It did not work.
Comment: (sc)RNA-seq dataset for these cell lines: HEK293, HeLa, PC3 and U2OS
by
GenoMax
140k
Try SRA-explorer with search terms you want. Guide here: https://www.biostars.org/p/366721/ Check these portals: https://singlecell.broad…
Comment: Issue with making local BLAST database
by
Begonia_pavonina
▴ 140
Thank you @genomax, if I have well understood the `retmax` parameter and 10000 entries limitation are linked to the R package, and not to t…
Comment: Nanopore data filtering using fastp
by
emilydolivo97
• 0
thank you , this is my code : import sys import os import subprocess class FastpFiltering: def __init__(self, input_folder, fastp_ou…
Traffic: 3159 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6