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24
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4.0k
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News: #Bioinformatics Crowdcoding
News
updated 8.8 years ago by ▴ 800 • written 9.5 years ago by 152k
1
vote
0
replies
4.0k
views
News: Hands-On Training in RNA-seq Bioinformatics: A Practical Introduction - Mapping, Visualization, Basic Analyses
RNA-Seq News workshop next-gen
updated 16 months ago by 37k • written 8.7 years ago by 9.8k
23
votes
7
replies
3.9k
views
News: Research accounts on GitHub
github News git
updated 16 months ago by 37k • written 8.7 years ago by 152k
6
votes
4
replies
3.9k
views
News: awesome-single-cell: a list of open-source single-cell analysis software and workshop materials
single cell RNA-Seq News
6.6 years ago by Sean Davis 26k
11
votes
1
reply
3.9k
views
News: GATB will provide developer support via Biostar
minia dsk gatb
updated 12 months ago by 37k • written 8.7 years ago by ★ 1.5k
15
votes
4
replies
3.8k
views
News: Workshop: Genomic Data Visualization and Interpretation (Berlin, Germany)
R next-gen dataviz GenVisR News
5.9 years ago by carlopecoraro2 ★ 2.2k
1
vote
0
replies
3.7k
views
News: Workshop: Bioinformatics for Beginners, University of Maryland, College Park, USA
workshop RNA-Seq next-gen assembly News
updated 7.7 years ago by 96k • written 7.7 years ago by ▴ 20
8
votes
6
replies
3.7k
views
News: Last Call: Upcoming Workshop - Rna-Seq Bioinformatics: A Practical Introduction
rna-seq bioinformatics News
10.0 years ago by David Langenberger 9.8k
7
votes
8
replies
3.6k
views
News: Next-Gen Sequencing Tutorials On Cubelp (Cranfield Bioinformatics Electronic Learning Platform)
genome chip-seq snp assembly
updated 3 months ago by 37k • written 9.4 years ago by ▴ 610
6
votes
9
replies
3.6k
views
News: 1000 Genomes : The Initial Phase 3 variant list and phased genotypes.
News 1000genomes
updated 15 months ago by 37k • written 8.6 years ago by 152k
3
votes
3
replies
3.5k
views
News: A Tale Of Next Generation Sequencing Platforms: Ion Torrent, Pacific Biosciences And Illumina Miseq
sequencing News
10.4 years ago by Istvan Albert 96k
27
votes
9
replies
3.5k
views
News: OSX 10.11 released 30th Sep will be "rootless"
mac osx
updated 4 months ago by 37k • written 7.3 years ago by 13k
3
votes
2
replies
3.5k
views
News: Course/Workshop: Informatics For Rna-Sequence Analysis (June, 2013)
rna-seq News
updated 4 months ago by 37k • written 10.1 years ago by 20k
7
votes
3
replies
3.5k
views
News: Visualizing genomic data: techniques and challenges. Our interview with Dr. Malachi Griffith, Dr. Obi Griffith and Mr. Zachary Skidmore (The Griffith…
RNA-Seq R NGSdata genome News
4.1 years ago by carlopecoraro2 ★ 2.2k
0
votes
0
replies
3.4k
views
News: Journal Of Bioinformatics Research Studies- Call For Papers
bioinformatics publication biology News
8.8 years ago by jbrs.editor • 0
4
votes
0
replies
3.4k
views
News: RepurposeDB - A New Reference Database of Drug Repositioning
drug-repositioning precision medicine News
5.9 years ago by Khader Shameer 18k
8
votes
10
replies
3.4k
views
News: New versions of Minia and DSK (2.0.x)
minia dsk assembly gatb
updated 9 months ago by 37k • written 8.0 years ago by ★ 1.5k
11
votes
2
replies
3.4k
views
News: Coursera: Computational Molecular Evolution
News
updated 9.7 years ago by ★ 1.2k • written 9.7 years ago by 152k
5
votes
2
replies
3.4k
views
News: Tuesday 10/29 Live Tour Of New Features In Integrated Genome Browser 8
genome-browser rna-seq chip-seq News
updated 14 months ago by 37k • written 9.3 years ago by ★ 2.3k
9
votes
4
replies
3.3k
views
News: Conference Announcement - Camda 2013
conference classification News
9.9 years ago by okko.clevert ▴ 240
18
votes
11
replies
3.3k
views
News: Full Genome Sequencing Service 30x whole human genome sequencing for $3,490 (project cancelled)
genome next-gen-sequencing
updated 13 months ago by 37k • written 8.4 years ago by ▴ 100
6
votes
1
reply
3.3k
views
News: Symposium And Rna-Seq Data Analysis Workshop Charlotte May 13-14
rna rna-seq training bioinformatics News
8.8 years ago by Ann ★ 2.3k
5
votes
1
reply
3.3k
views
News: Broad Gatk Haplotypecaller Speed Improved 2-4 X By Cooperation With Intel, And Incremental Multi-Sample Calling Made Possible!
gatk variant-calling News
8.8 years ago by William ★ 5.1k
59
votes
31
replies
3.3k
views
12 follow
News: Example of how bioinformaticians can publish in Scientific Reports (by nature publishing group) using publicly available NGS data
publication NGS News
updated 6.1 years ago by ▴ 50 • written 6.1 years ago by 9.8k
2
votes
0
replies
3.3k
views
News: Bioinformatics Open Days 2Nd Edition - 14 And 15 Of March, 2013 At The University Of Minho, Campus Gualtar, Braga, Portugal.
conference bioinformatics News
10.0 years ago by marco.reis87 ▴ 20
33
votes
5
replies
3.3k
views
News: FINAL CALL: Epigenetics Workshop - DNA Methylation Data Analysis (some last seats available)
Workshop Epigenetics Bisulfite Sequencing News
updated 6.2 years ago by 9.8k • written 6.7 years ago by ▴ 460
14
votes
3
replies
3.2k
views
News: Updated: Conference/Symposium/Seminar/Workshop alert 2018-2019
bioinformatics symposium seminar conference News
updated 4.3 years ago by ▴ 260 • written 4.7 years ago by 5.7k
12
votes
7
replies
3.2k
views
News: Welcome Ensembl REST with more endpoints!
rest-api News ensembl
updated 12 months ago by 37k • written 8.3 years ago by ★ 5.2k
9
votes
5
replies
3.2k
views
News: SAMTOOLS 1.4 released
samtools News
5.9 years ago by Pierre Lindenbaum 152k
1
vote
0
replies
3.2k
views
News: Command Line Bioinformatics and High-throughput Sequencing Analysis Course
training course
updated 13 months ago by 37k • written 8.4 years ago by 7.4k
0
votes
1
reply
3.2k
views
News: Workshop: Introductory Population Genomics: From Data to Inference
SNP R next-gen News
6.2 years ago by carlopecoraro2 ★ 2.2k
17
votes
9
replies
3.2k
views
News: My Ncbi Curriculum Vitae Web Application: Sciencv
ncbi job News
updated 9.4 years ago by 27k • written 9.4 years ago by 152k
50
votes
17
replies
3.2k
views
News: Biostars 3.0 is now under testing. It has groups, charms and other interesting features.
biostar meta
updated 6 months ago by 37k • written 7.9 years ago by 96k
2
votes
0
replies
3.1k
views
News: Synthetic DNA/RNA Spike-in standards for NGS
RNA-Seq assay spike-in News
6.5 years ago by GenoMax 125k
5
votes
2
replies
3.1k
views
News: Summary of AGBT 2015
AGBT 2015 News
updated 7.9 years ago by ▴ 160 • written 7.9 years ago by ▴ 640
12
votes
17
replies
3.1k
views
6 follow
News: A programming language for living cells [Cello]
dna language research sequence News
6.8 years ago by Sukhi Singh 11k
10
votes
0
replies
3.1k
views
News: 1000 Genomes data on GRCh38
1000Genomes GRCh38 alts alignment
updated 5 months ago by 37k • written 7.3 years ago by ▴ 100
54
votes
24
replies
3.1k
views
12 follow
News: Big news from Microsoft. BASH on windows.
windows News
written 6.8 years ago by ★ 3.1k
8
votes
1
reply
3.1k
views
News: LAST DAY TO REGISTER - NGS Workshop 2015: A Practical Introduction to NGS Data Analysis (Oxford, UK)
workshop News RNA-Seq
updated 22 months ago by 37k • written 8.3 years ago by 9.8k
27
votes
7
replies
3.1k
views
News: The Biostar Swarm: A Visualization
biostar
updated 14 months ago by 37k • written 10.0 years ago by 96k
11
votes
0
replies
3.1k
views
News: BWA 0.7.11 is out, supports ALT contigs
BWA News
8.1 years ago by Devon Ryan 102k
2
votes
0
replies
3.1k
views
News: Promoter Design Challenge: Design A Plant Promoter And We Will Construct It.
promoter plant bioinformatics transcription-factor annotation News
10.0 years ago by promotercad ▴ 20
12
votes
0
replies
3.1k
views
News: Looking For Feedback On The Json Output For Ncbi E-Utilities
ncbi eutils bioinformatics News
updated 10.2 years ago by 96k • written 10.2 years ago by ▴ 360
10
votes
2
replies
3.0k
views
News: Biostars based Q&A for Bioconductor: http://support.bioconductor.org
RNA-Seq bioconductor
updated 13 months ago by 37k • written 8.4 years ago by 152k
1
vote
1
reply
3.0k
views
News: Course: STATISTICS FOR BIOLOGISTS USING R. 18-22 September (Berlin)
R statistics News
6.0 years ago by carlopecoraro2 ★ 2.2k
7
votes
0
replies
3.0k
views
News: Ncbi E-Utilities Now Provides Output In Json Format (Einfo, Esearch, And Esummary Only, For Now)
ncbi format eutils entrez
updated 5 months ago by 37k • written 9.0 years ago by 152k
0
votes
1
reply
3.0k
views
News: Call For Book Chapters: Big Data Analytics in Genomics (Springer USA)
Book-Chapter CFP
updated 5 months ago by 37k • written 7.3 years ago by ▴ 10
9
votes
3
replies
3.0k
views
News: New Human Genome Assembly (Grch38) Released
human genome assembly News
9.1 years ago by Pierre Lindenbaum 152k
0
votes
0
replies
3.0k
views
News: sRNAbench: profiling of small RNAs and its sequence variants in single or multi-species high-throughput experiments
microRNA small RNA isomiRs webserver News
8.3 years ago by David Langenberger 9.8k
14
votes
4
replies
3.0k
views
News: FULL: NGS Data Analysis Workshop for Beginners in Munich (29 June - 1 Juli 2016)
RNA-Seq next-gen NGS
updated 6 months ago by 37k • written 7.0 years ago by 9.8k
1,000 results • Page 2 of 20
Recent Votes
Comment: IGV coverage bar has color, but no mutation?
Answer: Hugely different results between edgeR and DESeq2
Gene correlation with single cell data?
Answer: Why is the fraction of mRNA transcripts captured per cell so low?
CluserProfiler message "No gene can be mapped"
C: CluserProfiler message "No gene can be mapped"
BAM index visualizer - a tool for helping to understand the BAI file format
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Recent Replies
Comment: Protein protein interactions by mohammadhassanj ▴ 230
[uniprot][1] [1]: https://www.uniprot.org/
Answer: filtering by POS in bcftools by jediknightchannel • 0
Actually the best way is bcftools view -R regions.tsv my.vcf Where regions.tsv looks like chr1 123 chr1 567
Comment: IGV coverage bar has color, but no mutation? by Amitm ★ 2.1k
This is possibly due to the threshold in the IGV preferences pop-up menu --> Alignments tab --> scroll down to 'Coverage Track Options' -->…
Comment: IGV coverage bar has color, but no mutation? by Nicolas Rosewick 10k
From IGV doc : > If a nucleotide differs from the reference sequence in greater than > 20% of quality weighted reads, IGV colors the bar …
Comment: Protein protein interactions by Peerzada • 0
It only provides the network of proteins interacting with the given protein but what I need is also the residue information that are intera…
Comment: Can someone help me search the minimal value of a two column csv file with a sin by mxm189 • 0
This works :) thank you. I am still new to this, I should look into some tutorials or do some more reading on working with linux
Comment: Can someone help me search the minimal value of a two column csv file with a sin by mxm189 • 0
I tried this and it did not work, but thanks for the comment ;) The answer posted by seidel did work
Comment: IGV coverage bar has color, but no mutation? by chrisgr ▴ 20
Thanks for your response! Sorry I messed up, you're right. I wanted to post a very simple example of what I was struggling with. Let me try…
Comment: Protein protein interactions by mohammadhassanj ▴ 230
Hi, [STRING][1] [1]: https://string-db.org/
Comment: IGV coverage bar has color, but no mutation? by Nicolas Rosewick 10k
I guess G is not the reference allele on the genome
Answer: Download customized list of human protein sequence by GenoMax 125k
Since you asked about NCBI - you should be able to do this using `NCBI datasets` [**tool**][1]. You could use the web page I linked or ther…
Comment: Error when runing Bowtie2: (ERR): bowtie2-align exited with value 1 by GenoMax 125k
If you were able to sort the file using `samtools` then you could have used `samtools fastq` to do the conversion. I mentioned three ways …
Comment: Error when runing Bowtie2: (ERR): bowtie2-align exited with value 1 by GenoMax 125k
You don't need to use `reformat.sh`. It was one of the three options for doing the conversion.
Answer: Gene Set Enrichment Analysis after DESeq2 by Oliver • 0
Another option to gene ranking is to use the "stat"-output, that is generated by DESeq2, since that takes the logFold-change, as well as th…
Comment: Why is the fraction of mRNA transcripts captured per cell so low? by jonas.andersson • 0
Thx for the answer, much appreciated!
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