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1,000 results • Page 2 of 20
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13
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8
replies
2.3k
views
News: NCBI is going to eliminate GI identifiers
ncbi GI
updated 7 weeks ago by 39k • written 7.2 years ago by ★ 2.9k
13
votes
2
replies
2.7k
views
News: A Summary Of All Encode Related News On The Openhelix Blog: Encode Floods The News
encode
updated 3 months ago by 39k • written 10.7 years ago by 98k
12
votes
0
replies
3.1k
views
News: Looking For Feedback On The Json Output For Ncbi E-Utilities
ncbi eutils
updated 3 months ago by 39k • written 10.5 years ago by ▴ 360
12
votes
4
replies
1.7k
views
News: #NGSchool2018 summer school in bioinformatics
NGSchool Personalised-Medicine Nanopore
updated 7 days ago by 39k • written 5.0 years ago by ▴ 290
12
votes
8
replies
3.0k
views
News: 'Potential Rna-Dna Binding Site In Alu Repeat', Or 'Why Should I Allow Multiple Mapping Positions When Analyzing Chipseq Data?'
chipseq rna
updated 3 months ago by 39k • written 9.9 years ago by 9.9k
12
votes
3
replies
2.2k
views
News: Google Summer of Code and Open Bioinformatics Foundation is looking for students
GSoC open-source
updated 7 weeks ago by 39k • written 7.2 years ago by 7.8k
12
votes
17
replies
3.4k
views
6 follow
News: A programming language for living cells [Cello]
dna sequence research language
updated 7 weeks ago by 39k • written 7.1 years ago by 11k
12
votes
8
replies
6.5k
views
News: rRNA Depletion / Poly-A Selection Responsible for RNA-seq Bias
rRNA-depletion RNA-seq-bias
updated 12 weeks ago by 39k • written 8.9 years ago by ▴ 640
12
votes
7
replies
3.4k
views
News: Welcome Ensembl REST with more endpoints!
ensembl rest-api
updated 11 weeks ago by 39k • written 8.6 years ago by ★ 5.2k
12
votes
2
replies
1.3k
views
News: Free online Ensembl course, now with a fixed sign-up link
ensembl course training
updated 6 weeks ago by 39k • written 6.3 years ago by 23k
11
votes
0
replies
3.1k
views
News: BWA 0.7.11 is out, supports ALT contigs
BWA
updated 11 weeks ago by 39k • written 8.4 years ago by 103k
11
votes
1
reply
1.9k
views
News: Upcoming Hands-On Workshop: De Novo Transcriptome Assembly and Analysis
Workshop Assembly RNA-Seq
updated 7 weeks ago by 39k • written 7.0 years ago by 9.9k
11
votes
2
replies
3.5k
views
News: Coursera: Computational Molecular Evolution
course
updated 3 months ago by 39k • written 10.0 years ago by 154k
11
votes
1
reply
3.9k
views
News: GATB will provide developer support via Biostar
minia dsk gatb
updated 16 months ago by 39k • written 9.0 years ago by ★ 1.5k
11
votes
1
reply
2.6k
views
News: NGS Data Analysis Workshop for Beginners in Munich (full)
RNA-Seq training NGS workshop
updated 10 months ago by 39k • written 6.8 years ago by 9.9k
11
votes
11
replies
1.3k
views
8 follow
News: Python Data Visualization Course. Last 3 spots left
next-gen
updated 5 days ago by 39k • written 4.5 years ago by ★ 2.3k
11
votes
25
replies
5.1k
views
15 follow
News: Questions for the NCBI Next Generation Sequencing Online Workshop Can be Posted with the NCBI_NOW Tag
NCBI_NOW
updated 8 weeks ago by 39k • written 7.7 years ago by ▴ 330
11
votes
13
replies
2.5k
views
News: Ensembl datacentre shut-down: Friday 26th August - Tuesday 30th August 2016
Maintenance Ensembl
updated 7 weeks ago by 39k • written 6.8 years ago by ★ 2.2k
11
votes
2
replies
1.3k
views
News: ASA discusses limitations of p-values what are the alternatives?
statistics p-value
updated 7 weeks ago by 39k • written 7.2 years ago by 14k
11
votes
2
replies
2.2k
views
News: Ensembl 76 is out
Genome-browser Ensembl
updated 17 months ago by 39k • written 8.8 years ago by 23k
10
votes
4
replies
2.4k
views
News: Ensembl 77 is out
ensembl
updated 16 months ago by 39k • written 8.7 years ago by 23k
10
votes
4
replies
1.5k
views
News: 3rd Berlin Summer School in NGS Data Analysis (2 seats just became available)
NGS RNA-Seq DNA-Seq
updated 5 days ago by 39k • written 4.4 years ago by 9.9k
10
votes
1
reply
2.9k
views
News: Ucsc: Dna Sequences In Web Pages Indexed By Bing.Com / Microsoft Research (All Phenotype And Literature Tracks)
web ucsc
updated 12 weeks ago by 39k • written 9.4 years ago by 154k
10
votes
7
replies
1.9k
views
News: Linux for Biologists e-book (free to read online)
linux python galaxy conda virtual-machine
20 months ago by vimalkvn ▴ 310
10
votes
2
replies
3.1k
views
News: Biostars based Q&A for Bioconductor: http://support.bioconductor.org
RNA-Seq bioconductor
updated 17 months ago by 39k • written 8.7 years ago by 154k
10
votes
0
replies
3.2k
views
News: 1000 Genomes data on GRCh38
1000Genomes GRCh38 alts alignment
updated 9 months ago by 39k • written 7.6 years ago by ▴ 100
10
votes
4
replies
678
views
News: Good morning
good morning
updated 8 months ago by 98k • written 8 months ago by 85k
10
votes
4
replies
740
views
News: RNA-Seq Data Analysis Workshop - Join us in Berlin, Germany from March 27-30, 2023!
NGS transcriptomics workshop
updated 10 weeks ago by ▴ 30 • written 3 months ago by 9.9k
10
votes
0
replies
2.8k
views
News: Cfp: Camda 2013 Challenge: Big Data In Life Sciences
ngs conference
updated 3 months ago by 39k • written 10.2 years ago by ▴ 240
10
votes
17
replies
2.7k
views
7 follow
News: Tell us what you think of the ENA browser?
ena
updated 7 weeks ago by 39k • written 6.5 years ago by ★ 1.8k
10
votes
7
replies
2.0k
views
News: Free draft copy of book on bioinformatics tools
alignment Assembly RNA-seq next-gen
updated 4 months ago by 39k • written 8.0 years ago by ★ 1.1k
10
votes
0
replies
1.9k
views
News: Pan-Cancer Analysis of RNA Binding Proteins in ~7000 tumor samples
Pan-Cancer mutations TCGA RNA-seq cancer-driver
updated 12 days ago by 39k • written 5.4 years ago by ▴ 850
10
votes
1
reply
1.8k
views
News: Run on 1st Berlin Summer School in NGS Data Analysis
DNA-Seq RNA-Seq NGS
updated 6 weeks ago by 39k • written 6.3 years ago by 9.9k
9
votes
5
replies
3.3k
views
News: SAMTOOLS 1.4 released
samtools
updated 21 days ago by 39k • written 6.2 years ago by 154k
9
votes
9
replies
6.9k
views
News: NovaSeq quality analysis
sequencing
updated 18 days ago by 39k • written 5.9 years ago by 18k
9
votes
6
replies
1.8k
views
News: No more hidden solutions in bioinformatics
precision-medicine genome-sequencing
updated 4 months ago by 39k • written 8.0 years ago by ★ 1.2k
9
votes
2
replies
14k
views
News: Bio-Linux 8 is now available
genome rna-seq alignment Assembly next-gen
updated 17 months ago by 39k • written 8.8 years ago by ★ 2.2k
9
votes
0
replies
2.0k
views
News: Commercial advertising on Biostars
meta biostars advertising
updated 11 weeks ago by 39k • written 8.7 years ago by 98k
9
votes
3
replies
3.0k
views
News: New Human Genome Assembly (Grch38) Released
human-genome assembly
updated 3 months ago by 39k • written 9.4 years ago by 154k
9
votes
3
replies
4.5k
views
News: Bioinformatics Contest 2020. Call for problems
contest News
3.3 years ago by alserg ▴ 830
9
votes
4
replies
3.4k
views
News: Conference Announcement - Camda 2013
conference classification
updated 3 months ago by 39k • written 10.4 years ago by ▴ 240
9
votes
5
replies
8.2k
views
News: A New Rest Based Api For Kegg: Kyoto Encyclopedia Of Genes And Genomes
kegg api
updated 3 months ago by 39k • written 10.5 years ago by ▴ 50
9
votes
5
replies
9.7k
views
8 follow
News: Online course: Learn Bioinformatics in 100 hours
biostars online-course
updated 3 months ago by 39k • written 5.8 years ago by 98k
9
votes
5
replies
2.8k
views
News: The NIH Software Discovery Index | We invite your comments
NIH software-catalog
updated 16 months ago by 39k • written 8.6 years ago by 26k
9
votes
4
replies
1.3k
views
News: Human Cell Atlas Data Coordination Platform Data Release Questionaire
RNA-Seq
updated 11 days ago by 39k • written 5.3 years ago by ★ 1.8k
8
votes
1
reply
3.2k
views
News: LAST DAY TO REGISTER - NGS Workshop 2015: A Practical Introduction to NGS Data Analysis (Oxford, UK)
RNA-Seq workshop
updated 11 weeks ago by 39k • written 8.6 years ago by 9.9k
8
votes
0
replies
2.6k
views
News: Plos Computational Biology: Translational Bioinformatics
publications plos
updated 3 months ago by 39k • written 10.2 years ago by 9.6k
8
votes
0
replies
1.7k
views
News: Upcoming Workshop: Introduction to R in Biology
workshop R
updated 6 weeks ago by 39k • written 6.3 years ago by 9.9k
8
votes
0
replies
1.8k
views
News: New MOOC: Algorithms for DNA Sequencing
alignment Assembly genomics mooc
updated 7 months ago by 39k • written 7.8 years ago by ▴ 80
8
votes
0
replies
2.0k
views
News: A Call To Create Listings Of The Best Review Papers
papers
updated 3 months ago by 39k • written 10.8 years ago by 98k
1,000 results • Page 2 of 20
Recent Votes
A: topGO which statistical test (fisher or KS) to use ?
Answer: I don't want to believe the Interproscan DB estimated download time.
Answer: I don't want to believe the Interproscan DB estimated download time.
Answer: I don't want to believe the Interproscan DB estimated download time.
Answer: I don't want to believe the Interproscan DB estimated download time.
Answer: I don't want to believe the Interproscan DB estimated download time.
Answer: WGCNA: many over and under-expressed features in modules of a signed network
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Recent Replies
Comment: readGenericHeader() error message Limma by Raony Guimarães ★ 1.2k
Can you post the error you are getting after renaming the colnames?
Answer: ABO alleles by Raony Guimarães ★ 1.2k
You could use a tool such as BOOGIE to infer the ABO alleles using VCF files: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4404330/
Answer: How to determine the exact version of hg38 if I have only the FASTA file by Raony Guimarães ★ 1.2k
You could use blastn to align your fasta reference against the other common fasta references and find out which one you have: blast …
Comment: Dada2 in Qiime2: losing reads during merging by andres.firrincieli 3.3k
Honestly, I would proceed only with the R1 reads however, you should probably post this question in the qiime2 forum. You can probably find…
Comment: I don't want to believe the Interproscan DB estimated download time. by gh • 0
Thank you!
Comment: What Are The Most Common Stupid Mistakes In Bioinformatics? by Raony Guimarães ★ 1.2k
You should also have told the correct command: grep '>' some.fasta And yes, of course, I did this before as well :D
Comment: WGCNA: many over and under-expressed features in modules of a signed network by andres.firrincieli 3.3k
> Ah, I just realized that I set the TOMType to signed. Is that > something different than the network type? It is a setting used for the …
Comment: Docker Error while running nf-core/rnaseq pipeline by eesha28112001 • 0
Okay, will do this! Using a Ubuntu subsystem on Windows so maybe it had something to do with that :(
Answer: Can any one suggest tools that generate "mind-maps" on concepts in biology/biote by Raony Guimarães ★ 1.2k
I don't know one specifically for biology but I would suggest [Miro][1] as a general-purpose mind mapping tool. [1]: https://miro.co…
Comment: mitochondrial genome, SRA PacBio sequencing. by GenoMax 129k
It does look like there are no PacBio datasets for insect mitogenomes. Not surprising since PacBio is more expensive compared to other sequ…
Comment: gatk Hardfilter Error by GenoMax 129k
I guess you changed the command in the original post since? I moved @Michael's comment to an answer. You can accept it (green check mark)…
Comment: WGCNA: many over and under-expressed features in modules of a signed network by Sebastian Hesse ▴ 320
Sorry, I forgot to add that code. I used the code below: bwnet_mrn <- blockwiseModules(exp_4wgcna_mrn, …
Comment: Alignment of case vs. control from different origin by i.sudbery 17k
If you are interested in network buiding, then case vs case is definately the way to go. In general, network building is an alternative to …
Comment: Docker Error while running nf-core/rnaseq pipeline by barslmn ★ 1.5k
You got some docker troubleshooting to do. Try reinstalling according to official documentation: https://docs.docker.com/engine/install/ Af…
Comment: Alignment of case vs. control from different origin by sativus • 0
Thank you for the extensive answer, i highly appreciate it! I understood the basics regarding the limitations of batch-effect errors from p…
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