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News: A Summary Of All Encode Related News On The Openhelix Blog: Encode Floods The News
News encode
updated 14 months ago by 37k • written 10.4 years ago by 96k
13
votes
2
replies
1.1k
views
News: Thank you Biostars!
acknowledgement thank you biostars forum News
3.7 years ago by Glory Basumata ▴ 140
12
votes
17
replies
3.1k
views
6 follow
News: A programming language for living cells [Cello]
dna language research sequence News
6.8 years ago by Sukhi Singh 11k
12
votes
4
replies
1.6k
views
News: #NGSchool2018 summer school in bioinformatics
NGSchool Nanopore Personalised Medicine News
4.6 years ago by kzkedzierska ▴ 290
12
votes
0
replies
3.1k
views
News: Looking For Feedback On The Json Output For Ncbi E-Utilities
ncbi eutils bioinformatics News
updated 10.2 years ago by 96k • written 10.2 years ago by ▴ 360
12
votes
8
replies
6.3k
views
News: rRNA Depletion / Poly-A Selection Responsible for RNA-seq Bias
RNA-seq-bias News rRNA-depletion
updated 14 months ago by 37k • written 8.6 years ago by ▴ 640
12
votes
7
replies
3.2k
views
News: Welcome Ensembl REST with more endpoints!
rest-api News ensembl
updated 12 months ago by 37k • written 8.3 years ago by ★ 5.2k
12
votes
3
replies
2.1k
views
News: Google Summer of Code and Open Bioinformatics Foundation is looking for students
open source job Forum News
updated 4.0 years ago by ▴ 10 • written 6.9 years ago by 7.7k
12
votes
8
replies
2.9k
views
News: 'Potential Rna-Dna Binding Site In Alu Repeat', Or 'Why Should I Allow Multiple Mapping Positions When Analyzing Chipseq Data?'
chipseq rna binding mapping News
9.6 years ago by David Langenberger 9.8k
12
votes
2
replies
1.2k
views
News: Free online Ensembl course, now with a fixed sign-up link
course free ensembl training News
5.9 years ago by Emily 23k
11
votes
0
replies
3.1k
views
News: BWA 0.7.11 is out, supports ALT contigs
BWA News
8.1 years ago by Devon Ryan 102k
11
votes
1
reply
1.9k
views
News: Upcoming Hands-On Workshop: De Novo Transcriptome Assembly and Analysis
Assembly RNA-Seq Workshop Bioinformatics News
6.7 years ago by David Langenberger 9.8k
11
votes
13
replies
2.4k
views
News: Ensembl datacentre shut-down: Friday 26th August - Tuesday 30th August 2016
Ensembl Maintenance News
6.4 years ago by Ben_Ensembl ★ 2.1k
11
votes
1
reply
2.6k
views
News: NGS Data Analysis Workshop for Beginners in Munich (full)
RNA-Seq training NGS workshop
updated 6 months ago by 37k • written 6.5 years ago by 9.8k
11
votes
2
replies
3.4k
views
News: Coursera: Computational Molecular Evolution
News
updated 9.7 years ago by ★ 1.2k • written 9.7 years ago by 152k
11
votes
0
replies
5.5k
views
News: Top N Reasons To Do A Ph.D. Or Post-Doc In Bioinformatics/Computational Biology
bioinformatics News
10.5 years ago by Istvan Albert 96k
11
votes
2
replies
1.2k
views
News: ASA discusses limitations of p-values what are the alternatives?
statistics p-value News
6.9 years ago by dariober 14k
11
votes
2
replies
2.1k
views
News: Ensembl 76 is out
Genome-browser Ensembl
updated 13 months ago by 37k • written 8.5 years ago by 23k
11
votes
1
reply
3.9k
views
News: GATB will provide developer support via Biostar
minia dsk gatb
updated 12 months ago by 37k • written 8.7 years ago by ★ 1.5k
11
votes
25
replies
4.9k
views
15 follow
News: Questions for the NCBI Next Generation Sequencing Online Workshop Can be Posted with the NCBI_NOW Tag
NCBI_NOW News
updated 4 months ago by 37k • written 7.3 years ago by ▴ 320
11
votes
11
replies
1.2k
views
8 follow
News: Python Data Visualization Course. Last 3 spots left
next-gen News
updated 4.2 years ago by ▴ 300 • written 4.2 years ago by ★ 2.2k
10
votes
1
reply
2.9k
views
News: Ucsc: Dna Sequences In Web Pages Indexed By Bing.Com / Microsoft Research (All Phenotype And Literature Tracks)
ucsc web News
updated 9.0 years ago by 11k • written 9.0 years ago by 152k
10
votes
1
reply
1.7k
views
News: Run on 1st Berlin Summer School in NGS Data Analysis
RNA-Seq DNA-Seq NGS data analysis News
6.0 years ago by David Langenberger 9.8k
10
votes
7
replies
1.9k
views
News: Free draft copy of book on bioinformatics tools
alignment Assembly RNA-seq next-gen
updated 9 days ago by 37k • written 7.7 years ago by ★ 1.1k
10
votes
2
replies
3.0k
views
News: Biostars based Q&A for Bioconductor: http://support.bioconductor.org
RNA-Seq bioconductor
updated 12 months ago by 37k • written 8.4 years ago by 152k
10
votes
17
replies
2.4k
views
7 follow
News: Tell us what you think of the ENA browser?
ena News
updated 13 months ago by ★ 1.8k • written 6.2 years ago by ★ 1.8k
10
votes
0
replies
2.7k
views
News: Cfp: Camda 2013 Challenge: Big Data In Life Sciences
conference ngs News
9.8 years ago by okko.clevert ▴ 240
10
votes
7
replies
1.6k
views
News: Linux for Biologists e-book (free to read online)
linux python galaxy conda virtual-machine
16 months ago by vimalkvn ▴ 310
10
votes
0
replies
1.8k
views
News: Pan-Cancer Analysis of RNA Binding Proteins in ~7000 tumor samples
RNA-seq TCGA Pan-Cancer mutations cancer driver News
4.3 years ago by lsp03yjh ▴ 850
10
votes
4
replies
2.3k
views
News: Ensembl 77 is out
ensembl
updated 12 months ago by 37k • written 8.3 years ago by 23k
10
votes
4
replies
565
views
News: Good morning
good morning
updated 4 months ago by 96k • written 4 months ago by 84k
10
votes
4
replies
1.4k
views
News: 3rd Berlin Summer School in NGS Data Analysis (2 seats just became available)
NGS RNA-Seq DNA-Seq News
4.0 years ago by David Langenberger 9.8k
10
votes
0
replies
3.1k
views
News: 1000 Genomes data on GRCh38
1000Genomes GRCh38 alts alignment
updated 5 months ago by 37k • written 7.3 years ago by ▴ 100
9
votes
4
replies
1.2k
views
News: Human Cell Atlas Data Coordination Platform Data Release Questionaire
RNA-Seq News
4.9 years ago by Laura ★ 1.8k
9
votes
5
replies
3.2k
views
News: SAMTOOLS 1.4 released
samtools News
5.9 years ago by Pierre Lindenbaum 152k
9
votes
5
replies
2.7k
views
News: The NIH Software Discovery Index | We invite your comments
NIH software-catalog
updated 12 months ago by 37k • written 8.3 years ago by 26k
9
votes
0
replies
2.0k
views
News: Commercial advertising on Biostars
biostars advertising News
updated 12 months ago by 37k • written 8.3 years ago by 96k
9
votes
3
replies
4.3k
views
News: Bioinformatics Contest 2020. Call for problems
contest News
2.9 years ago by alserg ▴ 780
9
votes
5
replies
9.5k
views
8 follow
News: Online course: Learn Bioinformatics in 100 hours
online course biostar News
updated 5.3 years ago by • 0 • written 5.4 years ago by 96k
9
votes
9
replies
6.7k
views
News: NovaSeq quality analysis
sequencing News
5.6 years ago by Brian Bushnell 18k
9
votes
2
replies
14k
views
News: Bio-Linux 8 is now available
genome rna-seq alignment Assembly next-gen
updated 13 months ago by 37k • written 8.5 years ago by ★ 2.2k
9
votes
4
replies
3.3k
views
News: Conference Announcement - Camda 2013
conference classification News
9.9 years ago by okko.clevert ▴ 240
9
votes
5
replies
8.1k
views
News: A New Rest Based Api For Kegg: Kyoto Encyclopedia Of Genes And Genomes
kegg api News
updated 10.2 years ago by 4.1k • written 10.2 years ago by ▴ 50
9
votes
6
replies
1.8k
views
News: No more hidden solutions in bioinformatics
precision-medicine genome-sequencing
updated 9 days ago by 37k • written 7.7 years ago by ★ 1.2k
9
votes
3
replies
3.0k
views
News: New Human Genome Assembly (Grch38) Released
human genome assembly News
9.1 years ago by Pierre Lindenbaum 152k
8
votes
6
replies
3.7k
views
News: Last Call: Upcoming Workshop - Rna-Seq Bioinformatics: A Practical Introduction
rna-seq bioinformatics News
10.0 years ago by David Langenberger 9.8k
8
votes
0
replies
2.6k
views
News: Plos Computational Biology: Translational Bioinformatics
tutorial News
updated 9.9 years ago by 96k • written 9.9 years ago by 9.5k
8
votes
2
replies
617
views
News: Save time and money through improved onboarding of your NGS data scientists
NGS data analysis Beginner News
updated 3.0 years ago by ▴ 300 • written 3.0 years ago by 9.8k
8
votes
0
replies
2.0k
views
News: A Call To Create Listings Of The Best Review Papers
News
10.4 years ago by Istvan Albert 96k
8
votes
1
reply
2.5k
views
News: An Interesting Article On Bioinformatics Education With Some Press For Biostar
biostar News
written 9.5 years ago by 11k
1,000 results • Page 2 of 20
Recent Votes
A: from .BAM to .BAI using samtools
Comment: bgzip error 4
Answer: Gene Set Enrichment Analysis, pathway, metabolism
Answer: Gene Set Enrichment Analysis, pathway, metabolism
Answer: Gene Set Enrichment Analysis, pathway, metabolism
Answer: Gene Set Enrichment Analysis, pathway, metabolism
Answer: Gene Set Enrichment Analysis, pathway, metabolism
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Recent Replies
Comment: How to Calulate Allele Frequency from a VCF File? by Jeremy Leipzig 21k
That's correct. You don't have biallelic alleles in mitochondria, so you can use either the Allele depth (AD) or depth of coverage (DP) for…
Comment: How to calculate tumor mutation burden (TMB)? by Fabio Marroni ★ 2.9k
I just published a [post][1] on my blog, in which I include a simple R function for computing TMB. Try to see if that helps. I followed the…
Comment: Gene Set Enrichment Analysis, pathway, metabolism by Rob ▴ 160
Thank you FrankStarling, ATpoint, jv, these were so helpful.
Comment: translate CDS to prot formatted with nt nubers by Pierre Lindenbaum 152k
> with nucleotide numbers and DNA/prot aligned line by line what does it mean ? Create a Minimal, Reproducible Example to enable others t…
Comment: How to translate CDS to an amino acid sequence by vvasta • 0
I tried several of the online DNA translation tools but have not found one that would output DNA/prot alignment with nucleotide number w…
Comment: How possible deadlocks are there while migrating from MYISAM to InnoDb? by Pierre Lindenbaum 152k
but you already knew it. https://www.biostars.org/p/9551097/#9551098
Comment: How possible deadlocks are there while migrating from MYISAM to InnoDb? by Pierre Lindenbaum 152k
your question is not related to bioinformatics. Ask stackoverflow.com.
Comment: Statistical test for checking cis regulation? by Fabio Marroni ★ 2.9k
Hi lumos. It is not very clear to me what kind of information are you using for the test and how are you measuring cis-regulation. Are you …
Comment: Error 134 while aligning using hisat2 by Fabio Marroni ★ 2.9k
Other instances of the same error were indeed related to disk [space][1]. Can you post the output of the command: `df -h /bams/`? Another p…
Comment: **Error: unable to open file or unable to determine types for file** by Pierre Lindenbaum 152k
``` Please ensure that your file is TAB delimited (e.g., cat -t FILE). - Also ensure that your file has integer chromosome coordinates in t…
Comment: bgzip error 4 by Pierre Lindenbaum 152k
I/O error. Where are you writing , which filesytem ? do you have enough space ? what is the output of gzip < chr1.vcf.gz > chr1.vcf.gz…
Comment: Error: unable to open file or unable to determine types for file bed file by Neel ▴ 10
**Error: unable to open file or unable to determine types for file** Hi i am trying to run this commands **bedtools intersect -a Ec_k1…
Answer: Anti-miRNA oligonuclotide identification by Asan Emirsale • 0
You should find complementary sequences to make the miRNA silent. Should it be the Biopython or another tool. The solution might be as simp…
Comment: counting reads in a fastq file using a refrence fasta file by vaslanzadeh ▴ 10
Thanks, this works but it is extremely slow, is there any other alternatives?
Answer: HISAT2 output direct to bam sorted by ATpoint 68k
hisat2 --dta -x genome -1 ../fastq_zea_mays/SRR214880_1.fastq -2 ../fastq_zea_mays/SRR214880_2.fastq \ | samtools sort -o sorted.b…
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