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1,000 results • Page
4 of 20
Sort: Votes
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Votes
Replies
6
votes
1
reply
2.7k
views
News:
GMOD Online Training 2014 coming up
galaxy
chado
gmod
annotation
updated 6 months ago by
Ram
40k • written 9.4 years ago by
Mary
11k
6
votes
1
reply
2.4k
views
News:
FastQC Version 0.11.1 released
genome
next-gen-sequencing
updated 6 months ago by
Ram
40k • written 9.3 years ago by
rtliu
★ 2.2k
6
votes
1
reply
2.7k
views
News:
The Art of Bioinformatics Scripting. A new book in the Biostar Handbook collection.
education
updated 3.0 years ago by
ghazala.bif.2k18
• 0 • written 3.8 years ago by
Istvan Albert
98k
6
votes
7
replies
5.1k
views
News:
Illumina Nextseq 500 And Hiseq X Ten: Newer Tech Lowering Cost Per Mbp
Illumina
updated 6 months ago by
Ram
40k • written 9.7 years ago by
support
▴ 640
6
votes
1
reply
939
views
News:
uniprot.org is moving from HTTP to HTTPS
protein
database
uniprot
updated 4 months ago by
Ram
40k • written 5.8 years ago by
Elisabeth Gasteiger
★ 2.3k
6
votes
2
replies
2.1k
views
News:
Galaxy-specific Biostar Instance
galaxy
biostars
updated 7 months ago by
Ram
40k • written 9.4 years ago by
martenson
▴ 380
6
votes
9
replies
3.9k
views
News:
1000 Genomes : The Initial Phase 3 variant list and phased genotypes.
1000genomes
updated 6 months ago by
Ram
40k • written 9.3 years ago by
Pierre Lindenbaum
157k
6
votes
0
replies
2.1k
views
News:
Biostars on Google Summer of Code 2015
meta
biostars
updated 16 months ago by
Ram
40k • written 8.6 years ago by
Istvan Albert
98k
6
votes
13
replies
1.7k
views
News:
Ensembl reduced functionality: 10th March-16th April 2020
BLAT
VEP
Ensembl
service
updated 3 months ago by
Ram
40k • written 3.6 years ago by
Ben_Ensembl
★ 2.3k
6
votes
2
replies
1.7k
views
News:
Belly Button Biodiversity Project Requests Your Analysis
biodiversity
project
updated 7 months ago by
Ram
40k • written 10.9 years ago by
Mary
11k
6
votes
4
replies
4.1k
views
News:
awesome-single-cell: a list of open-source single-cell analysis software and workshop materials
single-cell
RNA-Seq
updated 5 months ago by
Ram
40k • written 7.2 years ago by
Sean Davis
26k
6
votes
4
replies
969
views
News:
Upcoming online training courses
Python
R
2.1 years ago by
carlopecoraro2
★ 2.3k
6
votes
0
replies
2.6k
views
News:
Broad Releases Fastg Multiple Seq Assembly Format
FASTG
reference-format
updated 7 months ago by
Ram
40k • written 10.8 years ago by
William
★ 5.2k
6
votes
1
reply
1.9k
views
News:
Massively Differential Bias Between Two Widely Used Illumina Library Preparation Methods For Small Rna Sequencing
illumina
RNA-seq
updated 6 months ago by
Ram
40k • written 9.8 years ago by
David Langenberger
10k
6
votes
3
replies
2.3k
views
News:
Become a Professional Biinformatician in NGS, Microarray in very fair price. Register for ArrayGen training program as soon as possible to get good a…
ChIP-Seq
next-gen
RNA-Seq
updated 5 months ago by
Ram
40k • written 6.6 years ago by
Seema
• 0
6
votes
2
replies
2.4k
views
News:
Interested in de novo transcriptome assembly using Trinity? Check out our interview to Brian Haas
alignment
RNA-Seq
updated 5 months ago by
Ram
40k • written 6.6 years ago by
carlopecoraro2
★ 2.3k
6
votes
4
replies
1.5k
views
News:
Genomic variation course at the EBI - Updated
Ensembl
1000Genomes
snps
variation
updated 5 months ago by
Ram
40k • written 7.5 years ago by
Emily
23k
6
votes
7
replies
3.5k
views
News:
New in DiffBind: dba.plotProfile() - Peak profiles and profile heatmaps
DiffBind
ChIP-seq
deepTools
visualization
ATAC-seq
12 months ago by
Rory Stark
★ 2.0k
6
votes
1
reply
1.8k
views
News:
Contest: Antibody Marathon Match Problem: ABCSpeedup
contest
updated 6 months ago by
Ram
40k • written 8.7 years ago by
Pierre Lindenbaum
157k
6
votes
1
reply
2.7k
views
News:
"Oxford University Press to Publish NAR Genomics and Bioinformatics"
journal
updated 3 months ago by
Ram
40k • written 4.4 years ago by
Pierre Lindenbaum
157k
6
votes
7
replies
1.9k
views
News:
NCBI wants to remove quality scores from SRA
quality-scores
trimming
Assembly
genome
SRA
updated 3 months ago by
Ram
40k • written 3.2 years ago by
zhousun21
▴ 40
6
votes
2
replies
2.0k
views
News:
RNA-Seq Data Analysis Workshop in Leipzig, Germany (09 - 12 October 2017)
NGS
RNA-Seq
workshop
updated 4 months ago by
Ram
40k • written 6.2 years ago by
David Langenberger
10k
6
votes
2
replies
1.4k
views
News:
Biostars On The Genome Technology Cover
biostars
updated 7 months ago by
Ram
40k • written 10.7 years ago by
Istvan Albert
98k
6
votes
0
replies
5.2k
views
News:
Game Changer? Illumina Nextseq 500
illumina
updated 6 months ago by
Ram
40k • written 9.7 years ago by
IV
★ 1.3k
5
votes
1
reply
2.5k
views
News:
Advanced Course: R programming and development 15-16. January 2015 (Thursday-Friday), EMBL Heidelberg
programming
course
R
updated 6 months ago by
Ram
40k • written 8.9 years ago by
Laurent
★ 1.7k
5
votes
3
replies
1.3k
views
News:
Top GitHub repos for biomedicine
open-source
software
GitHub
updated 4 months ago by
Ram
40k • written 4.7 years ago by
field.cady
▴ 50
5
votes
1
reply
2.7k
views
News:
Canadian Bioinformatics Workshops Series Announced For 2014
training
updated 6 months ago by
Ram
40k • written 9.8 years ago by
Obi Griffith
20k
5
votes
3
replies
1.4k
views
News:
Bioinfo-Core Conference Call, October 17, 2017 (11 am EDT USA, local times around world)
bioinfo-core
updated 6 months ago by
Ram
40k • written 6.1 years ago by
GenoMax
134k
5
votes
4
replies
1.7k
views
News:
2nd International Conference on Pediatric Oncology and Pediatric Medicine
gene
updated 5 months ago by
Ram
40k • written 6.6 years ago by
pediatriconcology
• 0
5
votes
1
reply
959
views
News:
New biostar-tools metaport for FreeBSD
freebsd
software
2.0 years ago by
bacon4000
▴ 80
5
votes
2
replies
785
views
News:
The precisionFDA BioCompute Object App-a-thon has been extended to October 18!
BioCompute
challenge
updated 3 months ago by
Ram
40k • written 4.2 years ago by
hollystephens723
▴ 70
5
votes
0
replies
1.4k
views
News:
Bioinformatics in Google Summer of Code 2018
Ensembl
GSOC
updated 4 months ago by
Ram
40k • written 5.6 years ago by
Emily
23k
5
votes
1
reply
1.4k
views
News:
2-day WORKSHOP on SNAKEMAKE
next-gen
updated 4 months ago by
Ram
40k • written 5.3 years ago by
carlopecoraro2
★ 2.3k
5
votes
3
replies
682
views
News:
March 13-16: Virtual Nextflow and nf-core training event in 5 languages
nf-core
pipeline
Nextflow
updated 6 months ago by
Maxime Garcia
▴ 330 • written 7 months ago by
Matthias Zepper
4.1k
5
votes
0
replies
2.9k
views
News:
Penn State now offers an Online Graduate Certificate: Applied Bioinformatics
bioinformatics-education
updated 6 months ago by
Ram
40k • written 9.1 years ago by
Istvan Albert
98k
5
votes
1
reply
1.3k
views
News:
Bioinformatics Contest 2017
Contest
updated 9 months ago by
Ram
40k • written 6.7 years ago by
venu
7.1k
5
votes
3
replies
1.9k
views
News:
Nhgri Meeting About Human Variation Analysis Live Streaming [Now Done]
next-gen
exome
variation
updated 7 months ago by
Ram
40k • written 11.0 years ago by
Mary
11k
5
votes
1
reply
2.1k
views
News:
New version of the GATB library
minia
next-gen
gatb
dsk
updated 20 months ago by
Ram
40k • written 8.7 years ago by
edrezen
▴ 730
5
votes
2
replies
3.2k
views
News:
Summary of AGBT 2015
AGBT2015
AGBT
updated 6 months ago by
Ram
40k • written 8.6 years ago by
support
▴ 640
5
votes
0
replies
1.5k
views
News:
New Bioconductor F1000Research Channel for publishing Bioconductor workflows
bioconductor
reproducible-research
updated 6 months ago by
Ram
40k • written 8.2 years ago by
Sean Davis
26k
5
votes
2
replies
1.4k
views
News:
Google Dataset Search
google
updated 4 months ago by
Ram
40k • written 5.1 years ago by
Pierre Lindenbaum
157k
5
votes
0
replies
873
views
News:
Free online Ensembl REST API training
perl
rest-api
jupyter
python
ensembl
updated 4 months ago by
Ram
40k • written 4.8 years ago by
Emily
23k
5
votes
1
reply
3.4k
views
News:
Broad Gatk Haplotypecaller Speed Improved 2-4 X By Cooperation With Intel, And Incremental Multi-Sample Calling Made Possible!
gatk
variant-calling
updated 6 months ago by
Ram
40k • written 9.5 years ago by
William
★ 5.2k
5
votes
1
reply
1.1k
views
News:
Paid opportunity: need microbiome experts for a survey and test of robustness
survey
updated 7 months ago by
Ram
40k • written 3.0 years ago by
Jeremy Leipzig
21k
5
votes
1
reply
1.7k
views
News:
Google Joins The Global Alliance For Genomics And Health
genomics
updated 6 months ago by
Ram
40k • written 9.6 years ago by
Pierre Lindenbaum
157k
5
votes
0
replies
1.3k
views
News:
Bioconductor 2015 conference live tweeting and materials
bioconductor
R
updated 6 months ago by
Ram
40k • written 8.2 years ago by
Sean Davis
26k
5
votes
0
replies
1.8k
views
News:
The future of the postdoc
sequencing
Postdoc
updated 15 months ago by
Ram
40k • written 8.5 years ago by
HG
★ 1.2k
5
votes
0
replies
1.1k
views
News:
Bioinformatics Contest 2021
bioinfcontest
contest
bioinforussia
updated 7 months ago by
Ram
40k • written 2.4 years ago by
l_antonova
▴ 50
5
votes
2
replies
4.4k
views
News:
GeneSCF (Gene Enrichment Tool): Advice to users
kegg
GeneSCF
GO
annotation
updated 7 months ago by
Ram
40k • written 6.7 years ago by
EagleEye
7.5k
5
votes
2
replies
3.5k
views
News:
Tuesday 10/29 Live Tour Of New Features In Integrated Genome Browser 8
genome-browser
RNA-seq
ChIP-seq
updated 6 months ago by
Ram
40k • written 9.9 years ago by
Ann
★ 2.4k
1,000 results • Page
4 of 20
Recent Votes
Human Genomics Team Leader
Comment: Low Alignment rate
Answer: Filter transcription factors
Answer: Filter transcription factors
Answer: Filter transcription factors
Comment: Integrated Seurat object change name of the two conditions
Comment: Integrated Seurat object change name of the two conditions
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Recent Replies
Comment: Should I Learn Docker to Run Command Line Bioinformatics Tool?
by
ATpoint
76k
Never tried, so idk. Why wouldn't it support it?
Comment: Should I Learn Docker to Run Command Line Bioinformatics Tool?
by
ATpoint
76k
I never tried conda images but since `mamba > conda` I guess mambaforge is better.
Comment: Filter human transcription factors
by
Chris
▴ 180
Thank you so much!
Comment: Filter human transcription factors
by
Chris
▴ 180
Yes, I do GO and GSEA to get pathway. I download the background gene at https://www.gsea-msigdb.org/gsea/msigdb/human/collections.jsp#C3 Th…
Answer: Visualize where kmers are on a reference genome
by
Alex Reynolds
35k
Make a bigBed file: https://www.biostars.org/p/9546293/ Then view it on the UCSC Genome Browser: http://genome.ucsc.edu/goldenPath/help/…
Comment: Integrated Seurat object change name of the two conditions
by
camillab.
▴ 130
great! thank you very much!
Answer: Filter transcription factors
by
jared.andrews07
★ 15k
[This database](http://humantfs.ccbr.utoronto.ca/download.php) has been the best I've found.
Comment: Filter transcription factors
by
Ram
40k
What have you tried? Have you looked at GO annotations?
Comment: how to identify uniq genes between two gff files.
by
nikhil
▴ 10
yes @juke34 , I tried agat_sp_compare_two_annotations.pl for both gff files and got comparative output in table format. Thank you very muc…
Comment: Integrated Seurat object change name of the two conditions
by
Amitm
★ 2.2k
Yes, its similar structure. This snippet should add a new metadata column "sample.New" with what you want to do # Assuming a seurat obj. c…
Comment: Low Alignment rate
by
biofalconch
▴ 970
Yeap, you can sample your reads with `seqtk` like this: seqtk sample -s100 read2.fq 100 > Sample.fq Take a couple and run them throug…
Answer: obtaining circular RNAs' sequences from circBase
by
Barry Digby
★ 1.2k
You won't find them on circBase. circAtlas has the mature spliced sequence available. You can [search for circRNAs](https://ngdc.cncb.a…
Comment: Should I Learn Docker to Run Command Line Bioinformatics Tool?
by
Ram
40k
\#TIL mambaforge - better than continuum's conda images I'm guessing?
Comment: Should I Learn Docker to Run Command Line Bioinformatics Tool?
by
arriyaz.nstu
▴ 30
If the laptop doesn't support WSL2, then will the Docker (with linux) work?
Comment: Integrated Seurat object change name of the two conditions
by
camillab.
▴ 130
thanks but my metadata looks different from yours. Will it work even there are not the same "structure"? or…
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