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written 7.0 years ago by
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164
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129k
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107 follow
122
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44
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10k
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24 follow
updated 5 weeks ago by
Ram
41k
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Istvan Albert
99k
81
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39
replies
7.0k
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11 follow
updated 9 months ago by
Ram
41k
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Istvan Albert
99k
59
votes
31
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4.5k
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12 follow
updated 7 months ago by
Ram
41k
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David Langenberger
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11
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25
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5.7k
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15 follow
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Ram
41k
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written 8.2 years ago by
DCGenomics
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330
57
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24
replies
6.1k
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14 follow
updated 14 months ago by
Ram
41k
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written 8.2 years ago by
Istvan Albert
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54
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24
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3.9k
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12 follow
updated 8 months ago by
Ram
41k
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written 7.7 years ago by
poisonAlien
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3.2k
24
votes
21
replies
6.9k
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9 follow
45
votes
19
replies
6.2k
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8 follow
updated 9 months ago by
Ram
41k
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written 11.2 years ago by
Giovanni M Dall'Olio
28k
15
votes
18
replies
7.8k
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6 follow
51
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17
replies
3.7k
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updated 9 months ago by
Ram
41k
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written 8.7 years ago by
Istvan Albert
99k
10
votes
17
replies
3.1k
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7 follow
12
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17
replies
3.8k
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6 follow
46
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16
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5.6k
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12 follow
updated 6 months ago by
Ram
41k
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written 6.0 years ago by
Hussain Ather
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990
21
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16
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5.8k
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6 follow
updated 20 months ago by
Ram
41k
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written 8.9 years ago by
ugly.betty77
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1.1k
6
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13
replies
1.8k
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11
votes
13
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2.9k
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updated 8 months ago by
Ram
41k
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written 7.3 years ago by
Ben_Ensembl
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2.3k
48
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13
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25k
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10 follow
14
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11
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2.7k
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updated 6 months ago by
Ram
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written 5.9 years ago by
anicet.ebou
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170
11
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11
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1.6k
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updated 6 months ago by
Ram
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written 5.0 years ago by
carlopecoraro2
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7
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11
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1.9k
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updated 6 months ago by
Ram
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written 6.3 years ago by
Paul Kutzner
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100
18
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11
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3.8k
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21
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11
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19
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11
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6.7k
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updated 9 months ago by
Ram
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Istvan Albert
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22
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10
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8
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10
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6
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updated 9 months ago by
Ram
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written 9.5 years ago by
Pierre Lindenbaum
158k
0
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updated 9 months ago by
Ram
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Matt Shirley
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17
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9
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3.6k
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Ram
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Pierre Lindenbaum
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22
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6.5k
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Ram
41k
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David Langenberger
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27
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9
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13
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9
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Brian Bushnell
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12
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8
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3.3k
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Ram
41k
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7
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tiagoantao
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updated 5 months ago by
Alex Reynolds
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David Langenberger
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8
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41k
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Anima Mundi
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2.9k
12
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8
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17
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7
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8.8k
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updated 21 months ago by
Ram
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27
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updated 9 months ago by
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updated 17 months ago by
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since this is one of the top search results, I'm cross-posting this comment from another user (alexbarrera)
"that the values of the 5th co…
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Load up your data in IGV and visualize it relative to your annotation file. It will tell you where the data aligns.
5% match on a 99% ali…
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I've definitely just rounded soupX output and had no issues with pseudobulking.
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I thought Interproscan already has species-specific information, for example [this][1] page for Buchnera aphidicola. You can try to search …
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I don't understand your problem. What do you mean when you write:
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I also encountered issues when running ballgownrsem with gff files. Ballgown object was created, there is no informations about TPM and FPK…
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Try tripling your example seq length, see 20bp min region
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Is the genome/annotation from the same source i.e. Ensembl or so it appears?
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What does this do? It's not documented well and does not work for me in terms of, it produces no output:
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Did you not see the last part in my comment above about how to get the sequence?
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Thank you for your response.
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The main one I use is stats.sh from the bbmap package (conda installable).
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I have employed your above suggested approach for BQSR (latter one).
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