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308
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News: New version of ElasticBLAST (1.0.0) available.
NCBI ElasticBLAST BLAST
12 weeks ago by PeterC_NCBI ▴ 190
0
votes
1
reply
299
views
News: Courses in January - still a few seats available
R-Shiny Genomics Unix R
updated 6 weeks ago by 38k • written 3 months ago by ★ 2.3k
0
votes
0
replies
188
views
News: Sex Chromosome Evolution course
Genomics Sex-Chromosome-Evolution
updated 3 months ago by 38k • written 3 months ago by ★ 2.3k
0
votes
0
replies
234
views
News: Cellosaurus release 44 is available
cellosaurus cell-line
updated 3 months ago by 38k • written 3 months ago by ▴ 110
0
votes
0
replies
215
views
News: Introductory video to the Cellosaurus
cellosaurus cell-line
updated 3 months ago by 38k • written 3 months ago by ▴ 110
0
votes
3
replies
496
views
News: Nvidia Clara Parabricks is FREE for R&D
nvidia workflow gpu
updated 3 months ago by 2.6k • written 3 months ago by 153k
2
votes
3
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334
views
News: NCBI Comparative Genome Viewer now allows searches for genes across aligned assemblies
Browser NCBI Alignments Genome
3 months ago by PeterC_NCBI ▴ 190
1
vote
6
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676
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News: Course - FLOW CYTOMETRY ANALYSIS WITH R/BIOCONDUCTOR
Bioconductor FlowCytometry R
updated 9 weeks ago by ▴ 70 • written 3 months ago by ★ 2.3k
0
votes
0
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182
views
News: INTRODUCTION TO ANALYTICAL PALEOBIOLOGY: FOSSIL RECORD BIASES, DIVERSITY, & BIOGEOGRAPHY
Biogeography Paleobiology R
3 months ago by carlopecoraro2 ★ 2.3k
1
vote
0
replies
195
views
News: Analysis of Cancer Genomes Using R and Bioinformatic Tools
Genomics Cancer-Genomics R
updated 3 months ago by 38k • written 3 months ago by ★ 2.3k
0
votes
0
replies
308
views
News: course - GENOME ASSEMBLY USING OXFORD NANOPORE SEQUENCING
Long-reads Assembly Nanopore Genome
3 months ago by carlopecoraro2 ★ 2.3k
0
votes
0
replies
166
views
News: Online training - VERSION CONTROL FOR RESEARCHERS
Version Control Git Github
3 months ago by carlopecoraro2 ★ 2.3k
0
votes
1
reply
236
views
News: Research Training In NGS Data Analysis
analysis data-analysis
updated 3 months ago by 38k • written 3 months ago by • 0
0
votes
0
replies
278
views
News: Bayesian regression modeling in R course
RegressionModeling Bayesian R
3 months ago by carlopecoraro2 ★ 2.3k
0
votes
4
replies
450
views
News: Ensembl Release 104 and newer GTF files no longer have genes sorted by position
Ensembl GTF
updated 3 months ago by ★ 2.2k • written 3 months ago by ▴ 10
0
votes
0
replies
221
views
News: Genome Assembly and Annotation course
Annotation Nanopore GenomeAssembly Pacbio
4 months ago by carlopecoraro2 ★ 2.3k
3
votes
0
replies
953
views
News: Changes to the default NCBI BLAST nucleotide database (nt). Learn more and provide feedback!
NCBI Databases BLAST
4 months ago by PeterC_NCBI ▴ 190
0
votes
0
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228
views
News: Nextflow online training
Nextflow Workflow Reproducibility
updated 3 months ago by 38k • written 4 months ago by ★ 2.3k
0
votes
2
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946
views
News: :: FINAL CALL :: Next-Generation Sequencing Data Analysis: A Practical Introduction (December 12-14, 2022 in Munich, Germany)
rnaseq dnaseq sequencing ngs workshop
4 months ago by David Langenberger 9.9k
0
votes
0
replies
261
views
News: The Association for Single Cell Analysis (ASCA)
genomics singlecell metabolomics sequencing proteomics
4 months ago by dnsv.ev • 0
0
votes
0
replies
213
views
News: Deep Learning in Population Genomics and Phylogeography
DeepLearning Phylogeography PopulationGenomics
4 months ago by carlopecoraro2 ★ 2.3k
0
votes
0
replies
228
views
News: Metabarcoding in Microbial Ecology Workshop
Qiime2 R Metabarcoding Microbial-Ecology
4 months ago by carlopecoraro2 ★ 2.3k
1
vote
2
replies
350
views
News: Gene Set Enrichment Analysis in R/Bioconductor
Gene-Set-Enrichment-Analysis R Cancer-Genomics GSEA
4 months ago by carlopecoraro2 ★ 2.3k
0
votes
0
replies
223
views
News: Analysis of RNA sequencing data with R/Bioconductor course.
Bioconductor RNAseq R
4 months ago by carlopecoraro2 ★ 2.3k
0
votes
0
replies
329
views
News: Winter School in Bioinformatics
course workshop
updated 3 months ago by 38k • written 4 months ago by ★ 2.3k
1
vote
0
replies
298
views
News: Introduction to Nextflow
Nextflow
updated 3 months ago by 38k • written 4 months ago by ★ 2.3k
0
votes
2
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452
views
News: Seascape Genomics in R
Genomics Seascape R
updated 3 months ago by 38k • written 4 months ago by ★ 2.3k
0
votes
0
replies
217
views
News: Bioinformatics courses in November
Bioconductor Genomics R
updated 3 months ago by 38k • written 5 months ago by ★ 2.3k
0
votes
0
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282
views
News: Flow cytometry analysis with R/Bioconductor course
Bioconductor R Cytometry Flow
5 months ago by carlopecoraro2 ★ 2.3k
0
votes
0
replies
221
views
News: course: RNA-seq analyses in non-model organisms
differential Bioconductor RNAseq expression non-model organisms analysis R
5 months ago by carlopecoraro2 ★ 2.3k
0
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0
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246
views
News: course - Developing R/Bioconductor packages for genomics
developing package Bioconductor Genomics R
5 months ago by carlopecoraro2 ★ 2.3k
2
votes
0
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261
views
News: Four NCBI workshops in October (BLAST, Primer-BLAST, Metagenome analysis, Structures in iCn3D)
metagenomics MagicBLAST BLAST NCBI Primer-BLAST
5 months ago by PeterC_NCBI ▴ 190
0
votes
0
replies
322
views
News: course - Unix and shell scripting for bioinformatics
bash Shell-scripting Unix
updated 3 months ago by 38k • written 5 months ago by ★ 2.3k
0
votes
0
replies
272
views
News: course: Data Visualization in Python
Visualisation Python Data
updated 5 months ago by 126k • written 5 months ago by ★ 2.3k
0
votes
0
replies
253
views
News: Seascape Genomics in R course
Genomics R Seascape Population
5 months ago by carlopecoraro2 ★ 2.3k
0
votes
0
replies
266
views
News: Cellosaurus API
line cell API
5 months ago by Amos Bairoch ▴ 110
0
votes
0
replies
270
views
News: Cellosaurus release 43 is available
cellosaurus cell-line
updated 3 months ago by 38k • written 5 months ago by ▴ 110
0
votes
0
replies
225
views
News: Genomics Webinar: Using Mastermind’s New ClinVar Integration to Accelerate Clinical Diagnoses
variant-interpretation genomics database webinar
updated 3 months ago by 38k • written 6 months ago by • 0
0
votes
0
replies
208
views
News: course: Population Genomic Inference from Low-coverage Whole-genome Sequencing Data
whole-genome genomics population low-coverage sequencing
updated 6 months ago by 21k • written 6 months ago by ★ 2.3k
0
votes
0
replies
212
views
News: :: FINAL CALL :: RNA-Seq Data Analysis Workshop (October 25 - 28, 2022 in Leipzig, Germany) - 2 seats left
RNA-Seq workshop transcriptomics
6 months ago by David Langenberger 9.9k
0
votes
0
replies
197
views
News: Getting the most out of R course - last call
ggplot2 R tidyverse
6 months ago by carlopecoraro2 ★ 2.3k
0
votes
0
replies
273
views
News: The NCTR Indel Calling from Oncopanel Sequencing Data Challenge Winners have been announced!
FDA-challenge
updated 3 months ago by 38k • written 6 months ago by ▴ 10
1
vote
0
replies
238
views
News: Webinar (free) on Multimodal Single-Cell Data from winner of NeurIPS 2021
ATAC-seq CITE-seq scRNA-seq
6 months ago by Alexander ▴ 70
1
vote
0
replies
247
views
News: course Reproducible Analysis With R
R Reproducibility analysis Data
6 months ago by carlopecoraro2 ★ 2.3k
0
votes
0
replies
272
views
News: Virtual Genome Assembly workshop
Genome Workshop assembly Virtual
6 months ago by singh.vijender ▴ 70
10
votes
4
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620
views
News: Good morning
good morning
updated 6 months ago by 96k • written 6 months ago by 84k
6
votes
7
replies
2.7k
views
News: New in DiffBind: dba.plotProfile() - Peak profiles and profile heatmaps
DiffBind ChIP-seq deepTools visualization ATAC-seq
6 months ago by Rory Stark ★ 1.7k
0
votes
0
replies
285
views
News: Sex Chromosome Evolution course
course Genomics
updated 3 months ago by 38k • written 6 months ago by ★ 2.3k
0
votes
0
replies
239
views
News: Online training - Data visualization in R with ggplot2
Visualization ggplot2 R Data
6 months ago by carlopecoraro2 ★ 2.3k
1
vote
0
replies
304
views
News: Searching for people who can share experience (give free webinars/discuss) on multimodal single cell data
ATAC-seq CITE-seq scRNA-seq
6 months ago by Alexander ▴ 70
1,000 results • Page 2 of 20
Recent Votes
Answer: How to implement this two-stage one-to-many workflow using WDL?
Creating workflows with snakemake and conda
Is There A Way To Run Fastqc On All The Fastq Files In The Different Directories With Just One Command?
Is There A Way To Run Fastqc On All The Fastq Files In The Different Directories With Just One Command?
Comment: samtools idxstats not removing ChrM
The Biostar Handbook. A bioinformatics e-book for beginners.
Converting mapped + unmapped BAM files to raw FASTQ (RNA-seq data)
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Comment: gene filtering for agilent microarray using Limma by Di Wu • 0
Dear Prof. Kevin Blighe, many thanks for your quick reply. About the `correlation` value, I used the following code for getting the value. …
Comment: GATK GenotypeGVCFs explain by Pierre Lindenbaum 153k
https://gatk.broadinstitute.org/hc/en-us/articles/360035531852-Intervals-and-interval-lists
Comment: GATK GenotypeGVCFs explain by Sarah ▴ 30
thank you
Comment: GATK GenotypeGVCFs explain by raphael.B ▴ 270
It limits the operation to some genomic regions given as parameter
Comment: GATK GenotypeGVCFs explain by Sarah ▴ 30
what does the option L
Comment: GATK GenotypeGVCFs explain by Pierre Lindenbaum 153k
GenotypeGVCFs takes a set of GVCF files called with HaplotyperCaler and output a VCF file.
Answer: TCGA Methylation Data and Gene Mapping by Basti ★ 1.4k
CpGs may be annotated to more than >1 gene simply because gene regions overlap on the genome. If you want to associate each gene to a me…
Comment: Circos plot by Fabio Marroni ★ 3.0k
Please give a look to [this post][1] for increasing the probability to get an answer. If I may add some needed info: 1. What exactly do y…
Comment: Trying to install Roary with Conda results in error message by tobiwan ▴ 10
Wow, thank you so much for your explanation! My conda channel is indeed set to strict priority. Should packages with different dependencie…
Comment: FeatureCounts >edgeR > GO by Basti ★ 1.4k
You can use BioMart to convert your "gene-IDs" to gene symbols, but you need to specify from which database your gene identifiers come from
Comment: How to create GO Bar Plot using data obtained from DAVID Functional Enrichment A by Basti ★ 1.4k
If you search "DAVID dotplot" on this forum, you have many answers to your question. Note that you can also perform DAVID Functional Enrich…
Answer: How to implement this two-stage one-to-many workflow using WDL? by Pierre Lindenbaum 153k
nottested, something like: ``` version 1.0 workflow BIOSTAR { call FIRST { } scatter (F in FIRST.each_F)…
Answer: Databases to check variant pathogenicity by AtenaLia ▴ 20
You can try https://genebe.net , it is similar to Varsome though...
Answer: ACMG assignment tools by AtenaLia ▴ 20
Hi, free ACMG implementation without restrictions can be found at https://genebe.net . AFAIK there is also a free API coming.
Comment: Bad quality fastq files for analysis by Gene_MMP8 ▴ 220
I don't have the data available. I want to identify such datasets. The overall aim is to determine what factors influence fastq data qualit…
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