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News: Changes to the default NCBI BLAST nucleotide database (nt). Learn more and provide feedback!
NCBI Databases BLAST
6 months ago by PeterC_NCBI ▴ 260
0
votes
0
replies
269
views
News: Nextflow online training
Nextflow Workflow Reproducibility
updated 5 months ago by 39k • written 6 months ago by ★ 2.3k
0
votes
2
replies
1.0k
views
News: :: FINAL CALL :: Next-Generation Sequencing Data Analysis: A Practical Introduction (December 12-14, 2022 in Munich, Germany)
rnaseq dnaseq sequencing ngs workshop
6 months ago by David Langenberger 9.9k
0
votes
0
replies
305
views
News: The Association for Single Cell Analysis (ASCA)
genomics singlecell metabolomics sequencing proteomics
6 months ago by dnsv.ev • 0
0
votes
0
replies
257
views
News: Deep Learning in Population Genomics and Phylogeography
DeepLearning Phylogeography PopulationGenomics
6 months ago by carlopecoraro2 ★ 2.3k
0
votes
0
replies
292
views
News: Metabarcoding in Microbial Ecology Workshop
Qiime2 R Metabarcoding Microbial-Ecology
7 months ago by carlopecoraro2 ★ 2.3k
1
vote
2
replies
409
views
News: Gene Set Enrichment Analysis in R/Bioconductor
Gene-Set-Enrichment-Analysis R Cancer-Genomics GSEA
7 months ago by carlopecoraro2 ★ 2.3k
0
votes
0
replies
268
views
News: Analysis of RNA sequencing data with R/Bioconductor course.
Bioconductor RNAseq R
7 months ago by carlopecoraro2 ★ 2.3k
0
votes
0
replies
383
views
News: Winter School in Bioinformatics
course workshop
updated 5 months ago by 39k • written 7 months ago by ★ 2.3k
1
vote
0
replies
344
views
News: Introduction to Nextflow
Nextflow
updated 5 months ago by 39k • written 7 months ago by ★ 2.3k
0
votes
2
replies
503
views
News: Seascape Genomics in R
Genomics Seascape R
updated 5 months ago by 39k • written 7 months ago by ★ 2.3k
0
votes
0
replies
259
views
News: Bioinformatics courses in November
Bioconductor Genomics R
updated 5 months ago by 39k • written 7 months ago by ★ 2.3k
0
votes
0
replies
472
views
News: Flow cytometry analysis with R/Bioconductor course
Bioconductor R Cytometry Flow
7 months ago by carlopecoraro2 ★ 2.3k
0
votes
0
replies
263
views
News: course: RNA-seq analyses in non-model organisms
differential Bioconductor RNAseq expression non-model organisms analysis R
7 months ago by carlopecoraro2 ★ 2.3k
0
votes
0
replies
279
views
News: course - Developing R/Bioconductor packages for genomics
developing package Bioconductor Genomics R
7 months ago by carlopecoraro2 ★ 2.3k
2
votes
0
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297
views
News: Four NCBI workshops in October (BLAST, Primer-BLAST, Metagenome analysis, Structures in iCn3D)
metagenomics MagicBLAST BLAST NCBI Primer-BLAST
7 months ago by PeterC_NCBI ▴ 260
0
votes
0
replies
394
views
News: course - Unix and shell scripting for bioinformatics
bash Shell-scripting Unix
updated 5 months ago by 39k • written 8 months ago by ★ 2.3k
0
votes
0
replies
305
views
News: course: Data Visualization in Python
Visualisation Python Data
updated 8 months ago by 129k • written 8 months ago by ★ 2.3k
0
votes
0
replies
287
views
News: Seascape Genomics in R course
Genomics R Seascape Population
8 months ago by carlopecoraro2 ★ 2.3k
0
votes
0
replies
318
views
News: Cellosaurus API
line cell API
8 months ago by Amos Bairoch ▴ 110
0
votes
0
replies
300
views
News: Cellosaurus release 43 is available
cellosaurus cell-line
updated 5 months ago by 39k • written 8 months ago by ▴ 110
0
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0
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256
views
News: Genomics Webinar: Using Mastermind’s New ClinVar Integration to Accelerate Clinical Diagnoses
variant-interpretation genomics database webinar
updated 5 months ago by 39k • written 8 months ago by • 0
0
votes
0
replies
236
views
News: course: Population Genomic Inference from Low-coverage Whole-genome Sequencing Data
whole-genome genomics population low-coverage sequencing
updated 8 months ago by 21k • written 8 months ago by ★ 2.3k
0
votes
0
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237
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News: :: FINAL CALL :: RNA-Seq Data Analysis Workshop (October 25 - 28, 2022 in Leipzig, Germany) - 2 seats left
RNA-Seq workshop transcriptomics
8 months ago by David Langenberger 9.9k
0
votes
0
replies
223
views
News: Getting the most out of R course - last call
ggplot2 R tidyverse
8 months ago by carlopecoraro2 ★ 2.3k
0
votes
0
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304
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News: The NCTR Indel Calling from Oncopanel Sequencing Data Challenge Winners have been announced!
FDA-challenge
updated 5 months ago by 39k • written 8 months ago by ▴ 10
1
vote
0
replies
278
views
News: Webinar (free) on Multimodal Single-Cell Data from winner of NeurIPS 2021
ATAC-seq CITE-seq scRNA-seq
8 months ago by Alexander ▴ 70
1
vote
0
replies
274
views
News: course Reproducible Analysis With R
R Reproducibility analysis Data
8 months ago by carlopecoraro2 ★ 2.3k
0
votes
0
replies
294
views
News: Virtual Genome Assembly workshop
Genome Workshop assembly Virtual
8 months ago by singh.vijender ▴ 70
10
votes
4
replies
678
views
News: Good morning
good morning
updated 8 months ago by 98k • written 8 months ago by 85k
6
votes
7
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3.0k
views
News: New in DiffBind: dba.plotProfile() - Peak profiles and profile heatmaps
DiffBind ChIP-seq deepTools visualization ATAC-seq
8 months ago by Rory Stark ★ 1.7k
0
votes
0
replies
320
views
News: Sex Chromosome Evolution course
course Genomics
updated 5 months ago by 39k • written 8 months ago by ★ 2.3k
0
votes
0
replies
267
views
News: Online training - Data visualization in R with ggplot2
Visualization ggplot2 R Data
9 months ago by carlopecoraro2 ★ 2.3k
1
vote
0
replies
340
views
News: Searching for people who can share experience (give free webinars/discuss) on multimodal single cell data
ATAC-seq CITE-seq scRNA-seq
9 months ago by Alexander ▴ 70
0
votes
0
replies
288
views
News: Online training - Introduction to Deep Learning for biologists
Python DeepLearning bigdata MachineLearning
9 months ago by carlopecoraro2 ★ 2.3k
0
votes
0
replies
443
views
News: 2023 EMBL Courses and Conferences
EMBL EMBLMalaria EESImaging
9 months ago by EMBL Events • 0
0
votes
0
replies
296
views
News: Online training -Getting the most out of R
R Science analysis Data
9 months ago by carlopecoraro2 ★ 2.3k
0
votes
0
replies
303
views
News: Online training - Cancer Genomics in R
Cancer Genomics R
updated 5 months ago by 39k • written 9 months ago by ★ 2.3k
0
votes
0
replies
286
views
News: Online training - DNA methylation in plants and animals
OxfordNanopore DNAMethylation BSseq longreads PacBio
9 months ago by carlopecoraro2 ★ 2.3k
0
votes
0
replies
308
views
News: 3rd edition of the Analysis of RNA sequencing data with R/Bioconductor course.
RNAseq Bioconductor R
10 months ago by carlopecoraro2 ★ 2.3k
4
votes
1
reply
2.1k
views
News: 2014 ISCB Wikipedia Article Competition announcement
ISCB competition Wikipedia
written 8.8 years ago by ★ 2.0k
1
vote
2
replies
610
views
News: Online training - Introduction to Nextflow
Bionfirmatics Pipeline Workflow Netflow
9 months ago by carlopecoraro2 ★ 2.3k
4
votes
1
reply
425
views
News: Online Course - A Practical Introduction to NGS Data Analysis (September 26-28, 2022)
workshop ngs data-analysis
updated 10 months ago by 39k • written 10 months ago by 9.9k
0
votes
0
replies
389
views
News: Final Call! Tomorrow (7/8) is the Deadline for Phase 1 submissions of the NCTR Indel Calling from Oncopanel Sequencing Data Challenge!
oncopanel indel-calling
updated 5 months ago by 39k • written 10 months ago by ▴ 10
0
votes
0
replies
338
views
News: Automate your NGS data analyses and create reproducible/scalable pipelines with NextFlow
pipeline Nextflow automation
11 months ago by David Langenberger 9.9k
0
votes
1
reply
757
views
News: Hands-On RNA-Seq Data Analysis Workshop in Leipzig, Germany (October 25-28, 2022)
RNA-Seq Transcriptomics NGS Workshop
11 months ago by David Langenberger 9.9k
0
votes
3
replies
1.0k
views
News: Less Than One Month Remaining until the Submission Deadline for Phase 1 of the NCTR Indel Calling from Oncopanel Sequencing Data Challenge!
oncopanel indel-calling
updated 5 months ago by 39k • written 11 months ago by ▴ 10
0
votes
0
replies
306
views
News: EBI Competency Hub Supporting competency-based training and professional development.
ebi carreer
11 months ago by Pierre Lindenbaum 154k
0
votes
0
replies
299
views
News: Introduction to Statistics in R for biologists
tydeverse R Statistics
11 months ago by carlopecoraro2 ★ 2.3k
1
vote
0
replies
298
views
News: Data analysis with the Tidyverse in July (18th-21st).
Visualization R Tidyverse data-analysis
updated 10 months ago by 39k • written 11 months ago by ★ 2.3k
1,000 results • Page 3 of 20
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Comment: BioInformatics, Software
Answer: How to calculate kinship matrix table from vcf file
Answer: how to create correlation matrix R
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Comment: BioInformatics, Software by hashim.rana11 • 0
Thank you so much...
Comment: how to create correlation matrix R by satva72 • 0
great! thanks
Comment: BioInformatics, Software by barslmn ★ 1.5k
https://bio.tools/ is a great website indexing software used in bioinformatics.
Comment: BioInformatics, Software by Pierre Lindenbaum 154k
This is just too broad. what did you find so far ?
Answer: How to calculate kinship matrix table from vcf file by barslmn ★ 1.5k
You can use the vcftools relatedness2 module. Which implements the method describes in the paper: https://academic.oup.com/bioinformatics/a…
Answer: How to convert bed file to vcf? by Pierre Lindenbaum 154k
use AWK, change the header, body according to your needs... awk 'BEGIN {printf("##fileformat=VCFv4.2\n##INFO=<ID=END,Number=1,Type=I…
Comment: Doubt - installing LncTar software by Jeremiah • 0
It is the full result, there is only one lncRNA and one mRNA in Examp1, and the output file is just like web version reult
Comment: How to get a comperative result of 2 bed files? by Pierre Lindenbaum 154k
convert the bed to vcf and use truvari.
Comment: bioinformatic analysis protocol performed by CD Genomics by barslmn ★ 1.5k
Mail their representative you talked with before or their support and ask them. There may not be a citable source. However, you can write t…
Comment: How to get a comperative result of 2 bed files? by herh • 0
Actually, I am asked to use [truvari tool][1] but it works with vcf datasets. So, indeed I need a benchmarking measurement. One bed file is…
Comment: Building Dict File for GATK by dare_devil ★ 3.1k
Make sure that you have installed GATK in your system. Then follow the commands: For example, to generate `.dict` for `Homo_sapiens_assemb…
Comment: Precision-recall curve to compare metagenome classifiers to a gold standard - Is by sneha.d • 0
Hi, I'm trying to construct a similar curve using Kraken2 and Bracken report files. I'm trying to use the sklearn.metrics.precision_recall_…
Comment: How to convert *.hic file to *.mcool file? by NikhilP ▴ 20
Thanks I'll check that too. Actually I found a way to add weight column in the converted mcool file by using cooler package.
Comment: What is NCBI Gene ID, where to find it and how to convert to entrez ID? by Pegasus ▴ 90
Hi, I am facing the exact issue, have u had luck to solve it ? If yes, please share here. Thanks
Comment: including samples for which group is unknown to help adjust for another variable by Vincent Laufer ★ 2.8k
whether or not you should conduct a pooled analysis or a stratified analysis depends upon the ratio of between-group variance to within-gro…
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