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News: "Practical GWAS Using Linux and R" Workshop
GWAS Linux R next-gen
updated 11 months ago by 43k • written 6.7 years ago by ★ 2.5k
2
votes
0
replies
3.3k
views
News: Promoter Design Challenge: Design A Plant Promoter And We Will Construct It.
plant-promoter transcription-factor
updated 14 months ago by 43k • written 11.2 years ago by ▴ 20
10
votes
2
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3.2k
views
News: Biostars based Q&A for Bioconductor: http://support.bioconductor.org
RNA-Seq bioconductor
updated 2.3 years ago by 43k • written 9.6 years ago by 161k
3
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0
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3.2k
views
News: Tumorportal - A Tool For Exploring A Pan-Cancer Dataset
tcga cancer-genomics
updated 13 months ago by 43k • written 10.2 years ago by 19k
0
votes
1
reply
3.2k
views
News: Call For Book Chapters: Big Data Analytics in Genomics (Springer USA)
Book-Chapter CFP
updated 20 months ago by 43k • written 8.5 years ago by ▴ 10
1
vote
1
reply
3.2k
views
News: Course: STATISTICS FOR BIOLOGISTS USING R. 18-22 September (Berlin)
statistics R
updated 12 months ago by 43k • written 7.2 years ago by ★ 2.5k
7
votes
0
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3.2k
views
News: Ncbi E-Utilities Now Provides Output In Json Format (Einfo, Esearch, And Esummary Only, For Now)
ncbi format eutils entrez
updated 20 months ago by 43k • written 10.2 years ago by 161k
4
votes
3
replies
3.2k
views
News: -max_target_seqs 1 in NCBI standalone BLAST does not do what you think it does
blast
updated 11 months ago by 43k • written 5.5 years ago by 11k
0
votes
0
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3.2k
views
News: sRNAbench: profiling of small RNAs and its sequence variants in single or multi-species high-throughput experiments
webserver isomiRs microRNA small-RNA
updated 13 months ago by 43k • written 9.5 years ago by 11k
11
votes
13
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3.2k
views
News: Ensembl datacentre shut-down: Friday 26th August - Tuesday 30th August 2016
Maintenance Ensembl
updated 12 months ago by 43k • written 7.7 years ago by ★ 2.4k
2
votes
2
replies
3.1k
views
News: Upcoming Hands-On NGS Data Analysis Workshops 2018
Mapping Workshop RNA-Seq Quality-Control DNA-Seq
updated 11 months ago by 43k • written 6.4 years ago by 11k
2
votes
0
replies
3.1k
views
News: Short Course And Workshop On Rna-Seq Analysis
RNA-seq
updated 13 months ago by 43k • written 10.3 years ago by ▴ 60
7
votes
1
reply
3.1k
views
News: A Multi-Split Mapping Algorithm For Circular Rna, Splicing, Trans-Splicing, And Fusion Detection
ngs mapping
updated 13 months ago by 43k • written 10.2 years ago by 11k
3
votes
0
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3.1k
views
News: Statistics and R for the Life Sciences from Harvard University (Start: 19 Jan 2015)
edX statistics
updated 2.1 years ago by 43k • written 9.3 years ago by ★ 2.2k
13
votes
2
replies
3.1k
views
News: A Summary Of All Encode Related News On The Openhelix Blog: Encode Floods The News
encode
updated 14 months ago by 43k • written 11.6 years ago by 100k
10
votes
1
reply
3.1k
views
News: Ucsc: Dna Sequences In Web Pages Indexed By Bing.Com / Microsoft Research (All Phenotype And Literature Tracks)
web ucsc
updated 13 months ago by 43k • written 10.2 years ago by 161k
9
votes
5
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3.1k
views
News: The NIH Software Discovery Index | We invite your comments
NIH software-catalog
updated 2.2 years ago by 43k • written 9.5 years ago by 26k
4
votes
2
replies
3.1k
views
News: NCBI NOW (Next generation sequencing Online Workshop) October 13 - 23 , 2015
NCBI DNA-Seq NGS RNA-Seq
updated 12 months ago by 43k • written 8.6 years ago by ★ 2.2k
2
votes
3
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3.1k
views
News: Summer Course On Analyzing Next-Generation Sequencing Data, June 10-20, Kellog Biological Station, Michigan State University
education
updated 14 months ago by 43k • written 11.2 years ago by 100k
3
votes
2
replies
3.1k
views
News: Bioinformatics On Windows And Windows Cloud
windows cloud
updated 14 months ago by 43k • written 11.4 years ago by ▴ 20
5
votes
0
replies
3.0k
views
News: Penn State now offers an Online Graduate Certificate: Applied Bioinformatics
bioinformatics-education
updated 13 months ago by 43k • written 9.7 years ago by 100k
0
votes
1
reply
3.0k
views
News: Workshop: 16S rRNA gene Metabarcoding (Berlin. 3-7 April 2017)
next-gen alignment blast R
updated 12 months ago by 43k • written 7.1 years ago by ★ 2.5k
3
votes
0
replies
3.0k
views
News: Introduction to Python for Biologists and Advanced Python for Biologists courses
Python
updated 15 months ago by 43k • written 8.9 years ago by ★ 3.7k
2
votes
0
replies
3.0k
views
News: 2nd Edition of the Biostar Handbook. New online course starts now.
biostar-handbook
updated 10 months ago by 43k • written 5.2 years ago by 100k
22
votes
3
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3.0k
views
News: Biostar: 10,000 Question Milestone
meta
updated 14 months ago by 43k • written 10.9 years ago by 100k
0
votes
0
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3.0k
views
News: Travel and accommodation bursaries for workshops on Gene expression analysis, Metabolomics, RAD analysis or Population genomics in Environmental ‘Omi…
workshop
updated 2.4 years ago by 43k • written 9.7 years ago by ★ 4.0k
0
votes
0
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3.0k
views
News: Bioinformatics Hands-On Workshop: Discovering standard and non-standard RNA transcripts
workshop transcripts fusion-transcripts RNA-Seq
updated 2.4 years ago by 43k • written 9.7 years ago by 11k
4
votes
0
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3.0k
views
News: New simulation dataset for 'A benchmark for RNA-seq quantification pipelines'
RNA-Seq
updated 12 months ago by 43k • written 7.9 years ago by ★ 2.6k
6
votes
1
reply
2.9k
views
News: The Art of Bioinformatics Scripting. A new book in the Biostar Handbook collection.
education
updated 3.6 years ago by • 0 • written 4.4 years ago by 100k
10
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0
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2.9k
views
News: Cfp: Camda 2013 Challenge: Big Data In Life Sciences
ngs conference
updated 14 months ago by 43k • written 11.1 years ago by ▴ 240
14
votes
11
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2.9k
views
6 follow
News: Announcing bioSyntax: Syntax highlighting for biological files
computational-biology
updated 11 months ago by 43k • written 6.3 years ago by ▴ 170
2
votes
6
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2.9k
views
News: Master in integrated systems biology / Luxembourg
systems-biology Masters-course
updated 11 months ago by 43k • written 6.7 years ago by ▴ 130
2
votes
0
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2.9k
views
News: New article on TCGA data & useful resource: Comprehensive Genomic Characterization of Long Non-coding RNAs across Human Cancers
RNA-Seq long-noncoding-RNAs
updated 19 months ago by 43k • written 8.5 years ago by 7.5k
0
votes
0
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2.9k
views
News: WORKSHOP: Computational Approaches to Study Biological Mechanisms. Bringing together large scale ‘omics approaches and classical computational modell…
workshop
updated 2.4 years ago by 43k • written 9.7 years ago by ★ 4.0k
6
votes
1
reply
2.9k
views
News: "Oxford University Press to Publish NAR Genomics and Bioinformatics"
journal
updated 10 months ago by 43k • written 5.0 years ago by 161k
4
votes
0
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2.9k
views
News: Wed 9/25 On-Line, Live Tutorial For Integrated Genome Browser
visualization ChIP-seq RNA-seq igv genome-browser
updated 13 months ago by 43k • written 10.6 years ago by ★ 2.4k
4
votes
2
replies
2.9k
views
News: New ebook: From cell line to Command line to learn computational biology
unix snakemake computational-biology RNA-seq
5 months ago by Ming Tommy Tang ★ 3.9k
4
votes
4
replies
2.9k
views
News: Join The Dnanexus Developer Program
api cloud
updated 13 months ago by 43k • written 10.8 years ago by ▴ 30
8
votes
8
replies
2.9k
views
News: Coronavirus Genome Analysis: a new volume in the Biostar Handbook
biostar-handbook education
updated 10 months ago by 43k • written 4.1 years ago by 100k
3
votes
0
replies
2.9k
views
News: DNA Variant Calling Workshop
next-gen SNP
updated 12 months ago by 43k • written 7.9 years ago by ▴ 460
7
votes
0
replies
2.9k
views
News: Correction for "A benchmark for RNA-seq quantification pipelines"
RNA-seq
updated 12 months ago by 43k • written 7.8 years ago by ▴ 70
6
votes
1
reply
2.9k
views
News: GMOD Online Training 2014 coming up
galaxy chado gmod annotation
updated 13 months ago by 43k • written 10.0 years ago by 11k
5
votes
1
reply
2.8k
views
News: Canadian Bioinformatics Workshops Series Announced For 2014
training
updated 13 months ago by 43k • written 10.3 years ago by 20k
4
votes
0
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2.8k
views
News: Python for Scientists - FREE Ebook from O'Reilly
python Data-Analysis
updated 12 months ago by 43k • written 8.6 years ago by ★ 2.2k
11
votes
1
reply
2.8k
views
News: NGS Data Analysis Workshop for Beginners in Munich (full)
RNA-Seq training NGS workshop
updated 21 months ago by 43k • written 7.7 years ago by 11k
10
votes
7
replies
2.8k
views
News: Linux for Biologists e-book (free to read online)
linux python galaxy conda virtual-machine
2.6 years ago by vimalkvn ▴ 320
0
votes
0
replies
2.8k
views
News: Call-for-Papers in Epigenomics (BMRI, impact factor 2.7)
epigenomics papers
updated 13 months ago by 43k • written 9.5 years ago by • 0
1
vote
0
replies
2.8k
views
News: Workshop: Oxford Nanopore MinION Sequencing - Data Handling, Analysis and Applications, 1 November 2016, Edinburgh
Oxford-Nanopore training minION
updated 12 months ago by 43k • written 7.6 years ago by ★ 3.7k
0
votes
3
replies
2.8k
views
News: Physalia-courses: 16S rRNA gene Metabarcoding Workshop
RNA-seq sequencing SNP gene sequence
updated 12 months ago by 43k • written 7.5 years ago by ★ 2.5k
2
votes
0
replies
2.8k
views
News: WORKSHOP - Introduction to Python for biologists
next-gen python SNP RNA-Seq
updated 12 months ago by 43k • written 7.1 years ago by ▴ 110
1,000 results • Page 3 of 20
Recent Votes
Answer: MEGA Analysis Issue on High-Performance Computer
Comment: Ciriquant not configuring hisat2 indexed files
bcftools multiple commands
bcftools pipe generated file from first command with second
C: How to setup a Summarized Experiment
A: How to download genome assemblies from NCBI with a list of GCA identifiers?
what's the genomic location and name of gene responsible for orange and black patches in calico cats
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Comment: Ciriquant not configuring hisat2 indexed files by Atul K. • 0
Thank you. Decreased the threads to 2 (changed the threads: 2 in the config file; but it was somehow using 4). It did run for sometime but …
Answer: GTF file from Stringtie to R Studio for either Ballgown or DESeq2 by Ram 43k
See this section on how to use tximport to import StringTie output for DESeq2 processing: https://bioconductor.org/packages/devel/bioc/vign…
Comment: how to find genes that are significantly expressed in brain cortex samples by Ram 43k
Can you explain the normalization or give me a link that describes it, please? Comparison across samples will always be caveated as RNA-seq…
Comment: Installing/switching between versions of R/Rstudio/Bioconductor on personal mach by Ram 43k
Sorry, I see how harsh I come across. It's not good practice to use multiple versions of R in the same project. I can understand legacy pro…
Answer: MEGA Analysis Issue on High-Performance Computer by Mensur Dlakic ★ 27k
> I have ensured that I am using the latest version of MEGA and that other applications are not consuming excessive resources during the an…
Comment: Installing/switching between versions of R/Rstudio/Bioconductor on personal mach by BioinfGuru ★ 1.7k
Some of us are still learning and fall foul to knowledge limitation fairly regularly. Luckily we have people to put us in our place.
Answer: Running blastp with BLAST+ 2.15.0 against custom database; need to identify hits by GenoMax 141k
> I know that I should be able to collect protein sequences from the blastp results into a file, but I do not know how to do this. You c…
Comment: how to find genes that are significantly expressed in brain cortex samples by rheab1230 ▴ 140
I got the normalized gene count from gtex portal. they use inverse quantile normalization
Comment: what's the genomic location and name of gene responsible for orange and black pa by Matthias Zepper 4.5k
It is not entirely off, but evidently also not correct. Melanin biosynthesis is a multistep process, that indeed prominently involves the…
Comment: Installing/switching between versions of R/Rstudio/Bioconductor on personal mach by Ram 43k
> so a single Rscript could utilise multiple environments and versions How is that sane, let alone "better"? Also, why use `snap` for curl…
Comment: how to find genes that are significantly expressed in brain cortex samples by Ram 43k
Normalized how?
Comment: Duplicate marking, read names, and the SRA by GenoMax 141k
With public data one has to work with what is there. If the information about position is absent then only thing that could be done is to l…
Comment: Installing/switching between versions of R/Rstudio/Bioconductor on personal mach by BioinfGuru ★ 1.7k
Or better yet. To have an R package that allows access to conda environments via "conda list env" so that environments can be switched with…
Comment: what's the genomic location and name of gene responsible for orange and black pa by GenoMax 141k
If GPT is right then it says that: > The specific gene responsible for the orange and non-orange (black or > gray) fur colors in cats is t…
Comment: what's the genomic location and name of gene responsible for orange and black pa by Jean-Karim Heriche 27k
As far as I know the Orange locus hasn't been mapped to a gene. Maybe this paper will help in narrowing the search: https://www.ncbi.nlm.ni…
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