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News: FULL: NGS Data Analysis Workshop for Beginners in Munich (29 June - 1 Juli 2016)
RNA-Seq next-gen NGS
updated 8 months ago by 38k • written 7.1 years ago by 9.9k
0
votes
0
replies
3.0k
views
News: sRNAbench: profiling of small RNAs and its sequence variants in single or multi-species high-throughput experiments
webserver isomiRs microRNA small-RNA
updated 12 days ago by 38k • written 8.4 years ago by 9.9k
2
votes
0
replies
3.0k
views
News: "Practical GWAS Using Linux and R" Workshop
R Linux GWAS next-gen News
5.7 years ago by carlopecoraro2 ★ 2.3k
2
votes
0
replies
3.0k
views
News: Short Course And Workshop On Rna-Seq Analysis
RNA-seq
updated 19 days ago by 38k • written 9.2 years ago by ▴ 60
4
votes
3
replies
3.0k
views
News: CAFE v4.0 available
CAFE phylogenetics News
updated 3.5 years ago by • 0 • written 6.0 years ago by ▴ 150
12
votes
8
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3.0k
views
News: 'Potential Rna-Dna Binding Site In Alu Repeat', Or 'Why Should I Allow Multiple Mapping Positions When Analyzing Chipseq Data?'
chipseq rna
updated 22 days ago by 38k • written 9.7 years ago by 9.9k
3
votes
0
replies
3.0k
views
News: Tumorportal - A Tool For Exploring A Pan-Cancer Dataset
tcga cancer-genomics
updated 18 days ago by 38k • written 9.1 years ago by 19k
7
votes
1
reply
2.9k
views
News: A Multi-Split Mapping Algorithm For Circular Rna, Splicing, Trans-Splicing, And Fusion Detection
ngs mapping
updated 19 days ago by 38k • written 9.1 years ago by 9.9k
2
votes
2
replies
2.9k
views
News: Upcoming Hands-On NGS Data Analysis Workshops 2018
RNA-Seq DNA-Seq Workshop Mapping Quality Control News
5.3 years ago by David Langenberger 9.9k
10
votes
1
reply
2.9k
views
News: Ucsc: Dna Sequences In Web Pages Indexed By Bing.Com / Microsoft Research (All Phenotype And Literature Tracks)
web ucsc
updated 19 days ago by 38k • written 9.2 years ago by 153k
3
votes
0
replies
2.9k
views
News: Statistics and R for the Life Sciences from Harvard University (Start: 19 Jan 2015)
edX statistics
updated 11 months ago by 38k • written 8.2 years ago by ★ 2.2k
0
votes
0
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2.9k
views
News: Travel and accommodation bursaries for workshops on Gene expression analysis, Metabolomics, RAD analysis or Population genomics in Environmental ‘Omi…
workshop
updated 16 months ago by 38k • written 8.7 years ago by ★ 3.9k
5
votes
0
replies
2.8k
views
News: Penn State now offers an Online Graduate Certificate: Applied Bioinformatics
bioinformatics-education
updated 13 days ago by 38k • written 8.6 years ago by 96k
3
votes
2
replies
2.8k
views
News: Bioinformatics On Windows And Windows Cloud
windows cloud
updated 26 days ago by 38k • written 10.3 years ago by ▴ 20
3
votes
0
replies
2.8k
views
News: Introduction to Python for Biologists and Advanced Python for Biologists courses
Python
updated 10 weeks ago by 38k • written 7.8 years ago by ★ 3.7k
4
votes
2
replies
2.8k
views
News: NCBI NOW (Next generation sequencing Online Workshop) October 13 - 23 , 2015
NCBI mapping DNA-Seq RNA-Seq NGS News
updated 4.9 years ago by • 0 • written 7.5 years ago by ★ 2.2k
0
votes
0
replies
2.8k
views
News: Bioinformatics Hands-On Workshop: Discovering standard and non-standard RNA transcripts
workshop transcripts fusion-transcripts RNA-Seq
updated 15 months ago by 38k • written 8.7 years ago by 9.9k
0
votes
1
reply
2.8k
views
News: Workshop: 16S rRNA gene Metabarcoding (Berlin. 3-7 April 2017)
R next-gen alignment blast News
4.2 years ago by carlopecoraro2 ★ 2.3k
4
votes
0
replies
2.8k
views
News: New simulation dataset for 'A benchmark for RNA-seq quantification pipelines'
RNA-Seq News
6.8 years ago by Michael Love ★ 2.5k
0
votes
0
replies
2.8k
views
News: WORKSHOP: Computational Approaches to Study Biological Mechanisms. Bringing together large scale ‘omics approaches and classical computational modell…
workshop
updated 16 months ago by 38k • written 8.7 years ago by ★ 3.9k
2
votes
0
replies
2.8k
views
News: New article on TCGA data & useful resource: Comprehensive Genomic Characterization of Long Non-coding RNAs across Human Cancers
RNA-Seq long-noncoding-RNAs
updated 6 months ago by 38k • written 7.4 years ago by 7.4k
2
votes
3
replies
2.8k
views
News: Summer Course On Analyzing Next-Generation Sequencing Data, June 10-20, Kellog Biological Station, Michigan State University
education
updated 26 days ago by 38k • written 10.1 years ago by 96k
10
votes
0
replies
2.7k
views
News: Cfp: Camda 2013 Challenge: Big Data In Life Sciences
ngs conference
updated 26 days ago by 38k • written 10.0 years ago by ▴ 240
6
votes
7
replies
2.7k
views
News: New in DiffBind: dba.plotProfile() - Peak profiles and profile heatmaps
DiffBind ChIP-seq deepTools visualization ATAC-seq
6 months ago by Rory Stark ★ 1.7k
9
votes
5
replies
2.7k
views
News: The NIH Software Discovery Index | We invite your comments
NIH software-catalog
updated 14 months ago by 38k • written 8.5 years ago by 26k
4
votes
0
replies
2.7k
views
News: Wed 9/25 On-Line, Live Tutorial For Integrated Genome Browser
visualization ChIP-seq RNA-seq igv genome-browser
updated 21 days ago by 38k • written 9.5 years ago by ★ 2.3k
7
votes
0
replies
2.7k
views
News: Correction for "A benchmark for RNA-seq quantification pipelines"
rna-seq News
6.8 years ago by rairizarry ▴ 70
13
votes
2
replies
2.7k
views
News: A Summary Of All Encode Related News On The Openhelix Blog: Encode Floods The News
encode
updated 27 days ago by 38k • written 10.5 years ago by 96k
22
votes
3
replies
2.7k
views
News: Biostar: 10,000 Question Milestone
meta
updated 25 days ago by 38k • written 9.8 years ago by 96k
5
votes
1
reply
2.7k
views
News: Canadian Bioinformatics Workshops Series Announced For 2014
training
updated 20 days ago by 38k • written 9.3 years ago by 20k
3
votes
0
replies
2.7k
views
News: DNA Variant Calling Workshop
SNP next-gen News
6.8 years ago by Adele Feuerstein ▴ 460
0
votes
0
replies
2.7k
views
News: LAST CALL: Hands-On NGS Data Analysis Workshops 2014
NGS microRNA workshop RNA-Seq
updated 15 days ago by 38k • written 8.7 years ago by 9.9k
6
votes
1
reply
2.6k
views
News: GMOD Online Training 2014 coming up
galaxy chado gmod annotation
updated 15 days ago by 38k • written 8.9 years ago by 11k
0
votes
0
replies
2.6k
views
News: Workshops in Bioinformatics in 2019
assembly RNA-Seq R Python News
4.2 years ago by carlopecoraro2 ★ 2.3k
4
votes
4
replies
2.6k
views
News: Join The Dnanexus Developer Program
api cloud
updated 22 days ago by 38k • written 9.8 years ago by ▴ 30
4
votes
0
replies
2.6k
views
News: Python for Scientists - FREE Ebook from O'Reilly
python Data Analysis News
7.5 years ago by rtliu ★ 2.2k
2
votes
0
replies
2.6k
views
News: WORKSHOP - Introduction to Python for biologists
python RNA-Seq next-gen SNP News
6.0 years ago by oliverhooker ▴ 110
11
votes
1
reply
2.6k
views
News: NGS Data Analysis Workshop for Beginners in Munich (full)
RNA-Seq training NGS workshop
updated 8 months ago by 38k • written 6.6 years ago by 9.9k
1
vote
0
replies
2.6k
views
News: Workshop: Oxford Nanopore MinION Sequencing - Data Handling, Analysis and Applications, 1 November 2016, Edinburgh
training minION Oxford Nanopore bioinformatics News
6.5 years ago by Bert Overduin ★ 3.7k
8
votes
0
replies
2.6k
views
News: Plos Computational Biology: Translational Bioinformatics
publications plos
updated 26 days ago by 38k • written 10.0 years ago by 9.5k
4
votes
3
replies
2.6k
views
News: -max_target_seqs 1 in NCBI standalone BLAST does not do what you think it does
software error blast News
updated 4.4 years ago by 103k • written 4.4 years ago by 11k
6
votes
1
reply
2.5k
views
News: "Oxford University Press to Publish NAR Genomics and Bioinformatics"
journal News
3.9 years ago by Pierre Lindenbaum 153k
0
votes
0
replies
2.5k
views
News: Call-for-Papers in Epigenomics (BMRI, impact factor 2.7)
epigenomics papers
updated 12 days ago by 38k • written 8.4 years ago by • 0
0
votes
3
replies
2.5k
views
News: Physalia-courses: 16S rRNA gene Metabarcoding Workshop
SNP gene rna-seq sequencing sequence News
4.5 years ago by carlopecoraro2 ★ 2.3k
10
votes
17
replies
2.5k
views
7 follow
News: Tell us what you think of the ENA browser?
ena News
updated 15 months ago by ★ 1.8k • written 6.3 years ago by ★ 1.8k
3
votes
0
replies
2.5k
views
News: SeqAhead - COST - Bioinformatics for Non-Coding RNAs: State-of-the-art Training Workshop: 30/6-3/7/2014, Athens, Greece
RNA-Seq workshop lncRNA microRNA
updated 15 days ago by 38k • written 8.8 years ago by ★ 1.3k
2
votes
0
replies
2.5k
views
News: 2nd Edition of the Biostar Handbook. New online course starts now.
biostar handbook News
4.2 years ago by Istvan Albert 96k
1
vote
0
replies
2.5k
views
News: Bioconductor/R Workshop For High-Throughput Data Analysis (Web Version)
microarray bioconductor online next-gen
updated 21 days ago by 38k • written 9.5 years ago by ▴ 10
0
votes
0
replies
2.5k
views
News: course: Advanced R Programming. Berlin
R Programming News
5.2 years ago by carlopecoraro2 ★ 2.3k
7
votes
1
reply
2.5k
views
News: Integrated Genome Browser version 8.3 released - new native installer
ChIP-Seq RNA-Seq igv igb
updated 11 months ago by 38k • written 8.2 years ago by ★ 2.3k
1,000 results • Page 3 of 20
Recent Votes
Gene Set Enrichment Analysis
Can I sort my bam files with Picard MergeSamFiles?
Answer: Problem generating a .vcf after upgrade of samtools and bcftools
Answer: Problem generating a .vcf after upgrade of samtools and bcftools
Answer: Problem generating a .vcf after upgrade of samtools and bcftools
Answer: RPKM and FPKM quality control check and filtration
A: Decoy In Reference Assembly
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Recent Replies
Comment: Recommendation for (Alternative) Splicing analysis packages for bulk RNA-seq da by iraun 5.8k
Hi! I personally use [SplAdder][1], in case you want to add it to your list :). [1]: https://github.com/ratschlab/spladder
Answer: Problem generating a .vcf after upgrade of samtools and bcftools by Andy • 0
Really the only needed, that help worked, thank's
Comment: Active enhancers for mm39 by seidel 11k
Just curious what you mean by "active" enhancers. Enhancers are active in a given context (e.g. cell type developmental state, etc.), and m…
Comment: Creating loop for read groups using Picard by ntsopoul ▴ 20
try absolute paths navigate to the directory with cd and use pwd to get the absolute directory.
Comment: how to create interacting Hi-C peaks by rheab1230 ▴ 140
Thank you. I will use this package since I am more familiar with R
Comment: how to create interacting Hi-C peaks by rheab1230 ▴ 140
thank you. i will go through it
Comment: Fastqc report analysis by npavliukovec • 0
Yeah, after trimming and fastqc I will have to generate MultiQC plots and after do mapping with reference genome. As I know, for eukaryotes…
Comment: My fastq files(paired end) have different read number by kimgeng • 0
Oh, I see, Thank you however, I want to make vcf files with gatk haplotypecaller and GenotypeGVCFs. But I got some problems I have about 2.…
Answer: My fastq files(paired end) have different read number by ntsopoul ▴ 20
Yes, this is normal because depending on how you generate the bam file, the non-aligning reads are saved in the .bam file along the properl…
Answer: Can I use abundance from Tximport to compare the expression level of transcript by ntsopoul ▴ 20
No, you should not do that since the count matrix is not normalized. Also, the statistics for getting a pValue requires consideration of al…
Comment: Easy way to split VCF file by chromosome by Joana • 0
You need to run bcftools index on your vcf file before running the suggested command.
Comment: Fastqc report analysis by ntsopoul ▴ 20
I think you are fine, no worries. Will you go ahead an align the fastq files to a genome? Do you know how?
Comment: Fastqc report analysis by npavliukovec • 0
Thanks for your answer, it really helped me. Also, I added --illumina options, because then I checked MultiQC report for all of my samples …
Answer: Fastqc report analysis by ntsopoul ▴ 20
Hi there, Cool that you learn to do these things and welcome to the bioinformatic community. In my opinion, both of the reports look to h…
Comment: Creating loop for read groups using Picard by Pierre Lindenbaum 153k
duplicate of https://www.biostars.org/p/9558127/
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