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News: The bioinformatics chat is a new podcast about bioinformatics. In the first episode we discuss Scallop, a transcriptome assembler
podcast Assembly RNA-Seq
updated 11 months ago by 43k • written 7.0 years ago by ▴ 120
8
votes
0
replies
2.2k
views
News: A Call To Create Listings Of The Best Review Papers
papers
updated 14 months ago by 43k • written 11.7 years ago by 100k
8
votes
6
replies
17k
views
News: Bioinformatics PhD Programs in the US
education PhD
updated 11 months ago by 43k • written 6.4 years ago by ▴ 70
8
votes
3
replies
1.8k
views
News: Impact of outdated gene annotations on pathway enrichment analysis
pathway-enrichment gene-ontology david go
updated 12 months ago by 43k • written 7.6 years ago by 5.1k
8
votes
8
replies
2.9k
views
News: Coronavirus Genome Analysis: a new volume in the Biostar Handbook
biostar-handbook education
updated 10 months ago by 43k • written 4.1 years ago by 100k
8
votes
2
replies
901
views
News: Save time and money through improved onboarding of your NGS data scientists
NGS data-analysis
updated 13 months ago by 43k • written 4.3 years ago by 11k
8
votes
10
replies
4.0k
views
News: New versions of Minia and DSK (2.0.x)
minia dsk assembly gatb
updated 2.0 years ago by 43k • written 9.2 years ago by ★ 1.5k
8
votes
1
reply
3.4k
views
News: LAST DAY TO REGISTER - NGS Workshop 2015: A Practical Introduction to NGS Data Analysis (Oxford, UK)
RNA-Seq workshop
updated 13 months ago by 43k • written 9.5 years ago by 11k
8
votes
4
replies
1.9k
views
News: supporting vg users on biostars
variation-graph genome vg vgteam
updated 10 months ago by 43k • written 4.6 years ago by ★ 2.4k
8
votes
0
replies
1.8k
views
News: Please help! IGB grant and survey
igb ChIP-Seq RNA-Seq genome
updated 24 months ago by 43k • written 9.2 years ago by ★ 2.4k
8
votes
0
replies
1.2k
views
News: Final Call - Hands-On RNA-Seq Data Analysis Workshop - only 2 seats left
data-analysis RNA-Seq workshop
updated 10 months ago by 43k • written 4.8 years ago by 11k
8
votes
6
replies
4.0k
views
News: Last Call: Upcoming Workshop - Rna-Seq Bioinformatics: A Practical Introduction
RNA-seq
updated 14 months ago by 43k • written 11.3 years ago by 11k
8
votes
2
replies
761
views
News: FINAL CALL - Single-Cell RNA-Seq Data Analysis: A Practical Introduction (May 6-8, 2024 in Berlin)
single-cell sequencing
18 days ago by David Langenberger 11k
8
votes
0
replies
2.5k
views
News: De Novo Genome Assembly Using Next-Generation Sequence Data (8 - 10 February 2016)
Assembly Workshop DNA-Seq
updated 19 months ago by 43k • written 8.6 years ago by 11k
8
votes
6
replies
1.5k
views
News: Illumina to Acquire Pacific Biosciences
pacbio illumina
updated 11 months ago by 43k • written 5.5 years ago by 100k
8
votes
1
reply
2.7k
views
News: An Interesting Article On Bioinformatics Education With Some Press For Biostar
meta biostars
updated 14 months ago by 43k • written 10.7 years ago by 11k
8
votes
0
replies
2.0k
views
News: New MOOC: Algorithms for DNA Sequencing
alignment Assembly genomics mooc
updated 18 months ago by 43k • written 8.7 years ago by ▴ 80
8
votes
0
replies
2.8k
views
News: Plos Computational Biology: Translational Bioinformatics
publications plos
updated 14 months ago by 43k • written 11.1 years ago by 9.7k
8
votes
1
reply
1.7k
views
News: Clustered `nr` database is now available for web blast @NCBI
nr blast
updated 2.2 years ago by ★ 27k • written 2.3 years ago by 141k
7
votes
11
replies
2.0k
views
News: Bringing the power of Big Data to biomedical researchers
NGS biomedical-research
updated 11 months ago by 43k • written 6.7 years ago by ▴ 100
7
votes
3
replies
1.9k
views
News: New NCBI Datasets home and documentation pages provide easier access
ncbi gene SARS-CoV-2 genome
updated 3.0 years ago by 100k • written 3.0 years ago by ▴ 50
7
votes
2
replies
2.2k
views
News: Upcoming Hands-On Workshop: microRNA Analysis Using Next-Generation Sequencing
NGS microRNA workshop
updated 12 months ago by 43k • written 7.9 years ago by 11k
7
votes
0
replies
1.0k
views
News: New layout for NCBI BLAST FTP database site starting February 4, 2020
ftp blast blast_index blast-plus
updated 10 months ago by 43k • written 4.3 years ago by 141k
7
votes
5
replies
2.6k
views
News: Physalia-Course: Introduction to Linux and workflows for biologists (Berlin)
next-gen Unix Assembly alignment
updated 11 months ago by 43k • written 7.1 years ago by ★ 2.5k
7
votes
4
replies
2.7k
views
News: Boston Ma Us Area Folks: Software Carpentry Workshop For Women In Science Coming Up
python training
updated 14 months ago by 43k • written 11.0 years ago by 11k
7
votes
1
reply
3.1k
views
News: A Multi-Split Mapping Algorithm For Circular Rna, Splicing, Trans-Splicing, And Fusion Detection
ngs mapping
updated 13 months ago by 43k • written 10.2 years ago by 11k
7
votes
8
replies
1.9k
views
News: A new Stack Exchange site for Research Computing
unix linux
updated 11 months ago by 43k • written 6.4 years ago by ▴ 690
7
votes
3
replies
3.9k
views
News: Visualizing genomic data: techniques and challenges. Our interview with Dr. Malachi Griffith, Dr. Obi Griffith and Mr. Zachary Skidmore (The Griffith…
R RNA-Seq genome NGSdata
updated 11 months ago by 43k • written 6.8 years ago by ★ 2.5k
7
votes
8
replies
4.1k
views
News: Next-Gen Sequencing Tutorials On Cubelp (Cranfield Bioinformatics Electronic Learning Platform)
genome chip-seq snp assembly
updated 18 months ago by 43k • written 10.7 years ago by ▴ 610
7
votes
2
replies
2.3k
views
News: Annotation of Zebrafish pri-miRNAs promoters and CAGE-seq detected active Drosha processing events.
Drosha-processing moRNAs pri-miRNAs zebrafish
updated 20 months ago by 43k • written 8.3 years ago by ★ 2.4k
7
votes
2
replies
1.1k
views
News: NGS Data Analysis Workshops 2024
scRNA-seq dna-seq rna-seq nextflow
3 months ago by David Langenberger 11k
7
votes
0
replies
1.8k
views
News: Us Ethics Panel Reports On Dna Sequencing And Privacy
next-gen
updated 14 months ago by 43k • written 11.5 years ago by 11k
7
votes
0
replies
1.5k
views
News: First PacBio Sequel data available
pacbio sequel
updated 12 months ago by 43k • written 7.6 years ago by 141k
7
votes
1
reply
2.7k
views
News: Integrated Genome Browser version 8.3 released - new native installer
ChIP-Seq RNA-Seq igv igb
updated 2.1 years ago by 43k • written 9.3 years ago by ★ 2.4k
7
votes
0
replies
2.0k
views
News: CIViC Hackathon and Curation Jamboree at NGS in Molecular Pathology Meeting, NKI, Nov 30 - Dec 2
meeting civic hackathon NKI
updated 12 months ago by 43k • written 7.6 years ago by ▴ 290
7
votes
0
replies
2.9k
views
News: Correction for "A benchmark for RNA-seq quantification pipelines"
RNA-seq
updated 12 months ago by 43k • written 7.9 years ago by ▴ 70
7
votes
3
replies
4.6k
views
News: Pathway Commons 2 - Search And Visualize Public Biological Pathway Information. Single Point Of Access.
api cytoscape
updated 13 months ago by 43k • written 10.4 years ago by ★ 1.2k
7
votes
1
reply
674
views
News: NGSymposium - Conference in Computational Biology, 23-24.09
ML statistics conference ngschool
23 months ago by kzkedzierska ▴ 290
7
votes
0
replies
3.2k
views
News: Ncbi E-Utilities Now Provides Output In Json Format (Einfo, Esearch, And Esummary Only, For Now)
ncbi format eutils entrez
updated 20 months ago by 43k • written 10.2 years ago by 161k
6
votes
1
reply
2.9k
views
News: The Art of Bioinformatics Scripting. A new book in the Biostar Handbook collection.
education
updated 3.6 years ago by • 0 • written 4.4 years ago by 100k
6
votes
13
replies
2.1k
views
News: Ensembl reduced functionality: 10th March-16th April 2020
BLAT VEP Ensembl service
updated 10 months ago by 43k • written 4.2 years ago by ★ 2.4k
6
votes
0
replies
1.5k
views
News: Now Live: precisionFDA Hidden Treasures - Warm Up Challenge
next-gen-sequencing
updated 11 months ago by 43k • written 6.8 years ago by ▴ 90
6
votes
0
replies
1.9k
views
News: Bioinformatics Contest 2017
contest
updated 12 months ago by 43k • written 7.3 years ago by ▴ 70
6
votes
1
reply
1.9k
views
News: Are protein domains indivisible?
Athropy Domains Proteins
updated 13 months ago by 43k • written 8.9 years ago by ★ 4.2k
6
votes
0
replies
1.7k
views
News: BOSC 2015 slides and videos
BOSC BOSC2015
updated 18 months ago by 43k • written 8.8 years ago by ★ 2.2k
6
votes
1
reply
2.0k
views
News: Contest: Antibody Marathon Match Problem: ABCSpeedup
contest
updated 13 months ago by 43k • written 9.3 years ago by 161k
6
votes
2
replies
1.1k
views
News: Temporarily reduced functionality of Ensembl and Ensembl Genomes
Ensembl
updated 11 months ago by 43k • written 5.2 years ago by ★ 2.4k
6
votes
0
replies
2.3k
views
News: Bioinformatics internships with Google Summer of Code 2019
intern Ensembl GSOC
updated 11 months ago by 43k • written 5.2 years ago by 23k
6
votes
2
replies
1.8k
views
News: Belly Button Biodiversity Project Requests Your Analysis
biodiversity project
updated 14 months ago by 43k • written 11.4 years ago by 11k
6
votes
7
replies
4.2k
views
News: New in DiffBind: dba.plotProfile() - Peak profiles and profile heatmaps
DiffBind ChIP-seq deepTools visualization ATAC-seq
19 months ago by Rory Stark ★ 2.0k
1,000 results • Page 3 of 20
Recent Votes
Comment: Ideal PC configurations and operating system for bioinformatics laboratory
C: Threshold over percentage identity in blastn
A: Threshold over percentage identity in blastn
The Biostar Herald for Tuesday, April 23, 2024
Answer: Including plasmid in transcriptome assemblies
Comment: Ideal PC configurations and operating system for bioinformatics laboratory
RNA-seq power estimation using ssizeRNA program
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Recent Replies
Comment: TCGA2STAT Error: Firehose connection by Ram 43k
If their github repo is alive, raise an issue there.
Comment: TCGA2STAT Error: Firehose connection by Ngrin • 0
Yeah makes sense. I was following their github. Thanks for pointing this out.
Comment: The Biostar Herald for Tuesday, April 23, 2024 by Pierre Lindenbaum 161k
bwa 0.7.18 released ! https://github.com/lh3/bwa/releases/tag/v0.7.18
Comment: Downsampling fastq file by Ram 43k
I'm moving this to a comment for now.
Answer: Seurat merge and batch correction by bk11 ★ 2.3k
You can merge your seven Seurat objects and perform integration using **Seurat V5** to remove the batch effect- ```r library(Seurat) libra…
Comment: How do I use the STARSolo aligner with MGI DNBelab C series HT scRNAseq librarie by atowns21 • 0
Yeah, I've been digging around the web for a while now. Can't find any information about the barcodes. The total number of combinations is …
Comment: How do I use the STARSolo aligner with MGI DNBelab C series HT scRNAseq librarie by GenoMax 141k
Ah I see that in now. I am not sure why MGI has split the whitelist into two sections. You may need to see if you can dig up some info abou…
Comment: How do I use the STARSolo aligner with MGI DNBelab C series HT scRNAseq librarie by atowns21 • 0
read 1 is 30bp... which I think you meant to type. If you scroll approximately halfway down the json file I linked to, it has the following…
Comment: TCGA2STAT Error: Firehose connection by Ram 43k
The package has been removed from CRAN and BioConductor. Should you even be using it?
Comment: How do I use the STARSolo aligner with MGI DNBelab C series HT scRNAseq librarie by GenoMax 141k
The barcodes are in location 1-10 and you have the actual list there. I don't know for certain what is in position 11-20 (perhaps spacer, c…
Answer: Including plasmid in transcriptome assemblies by GenoMax 141k
> I want to use both STAR and BOWTIE2 for assembly Those programs are aligners not assemblers. But since you are working with bacteria yo…
Comment: How to slice a gvcf file with tabix? by Sd • 0
I already have gvcfs called by chromosome and there are 24 gvcfs per sample which I merged them into a single gvcf per sample. Now I want …
Comment: Find subcluster under a cluster, find differential genes in one cluster between by bk11 ★ 2.3k
First, could you please explain any reason for not using Seurat V5 approach for your data integration mentioned in [here][1]? > Now moving…
Comment: How do I use the STARSolo aligner with MGI DNBelab C series HT scRNAseq librarie by atowns21 • 0
So I'd take the json file located [here][1] and essentially create the whitelist to be all possible combinations of the position 1-10 barco…
Comment: TCGA2STAT Error: Firehose connection by Ngrin • 0
Hey Gnana, could you find a way to solve the issue? I have the same error
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