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1,000 results • Page 3 of 20
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8
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6
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News: Illumina to Acquire Pacific Biosciences
pacbio illumina
updated 4 months ago by 40k • written 4.9 years ago by 98k
8
votes
0
replies
1.7k
views
News: Upcoming Workshop: Introduction to R in Biology
workshop R
updated 5 months ago by 40k • written 6.6 years ago by 10k
8
votes
1
reply
3.2k
views
News: LAST DAY TO REGISTER - NGS Workshop 2015: A Practical Introduction to NGS Data Analysis (Oxford, UK)
RNA-Seq workshop
updated 6 months ago by 40k • written 8.9 years ago by 10k
8
votes
6
replies
3.8k
views
News: Last Call: Upcoming Workshop - Rna-Seq Bioinformatics: A Practical Introduction
RNA-seq
updated 7 months ago by 40k • written 10.7 years ago by 10k
8
votes
10
replies
3.7k
views
News: New versions of Minia and DSK (2.0.x)
minia dsk assembly gatb
updated 17 months ago by 40k • written 8.7 years ago by ★ 1.5k
8
votes
0
replies
1.8k
views
News: New MOOC: Algorithms for DNA Sequencing
alignment Assembly genomics mooc
updated 11 months ago by 40k • written 8.2 years ago by ▴ 80
8
votes
0
replies
2.7k
views
News: Plos Computational Biology: Translational Bioinformatics
publications plos
updated 7 months ago by 40k • written 10.6 years ago by 9.7k
8
votes
0
replies
1.2k
views
News: Final Call - Hands-On RNA-Seq Data Analysis Workshop - only 2 seats left
data-analysis RNA-Seq workshop
updated 4 months ago by 40k • written 4.2 years ago by 10k
8
votes
0
replies
2.1k
views
News: A Call To Create Listings Of The Best Review Papers
papers
updated 7 months ago by 40k • written 11.1 years ago by 98k
8
votes
1
reply
2.6k
views
News: An Interesting Article On Bioinformatics Education With Some Press For Biostar
meta biostars
updated 7 months ago by 40k • written 10.2 years ago by 11k
8
votes
0
replies
1.8k
views
News: Please help! IGB grant and survey
igb ChIP-Seq RNA-Seq genome
updated 17 months ago by 40k • written 8.6 years ago by ★ 2.4k
8
votes
1
reply
1.5k
views
News: Clustered `nr` database is now available for web blast @NCBI
nr blast
updated 19 months ago by ★ 25k • written 20 months ago by 134k
8
votes
4
replies
1.7k
views
News: supporting vg users on biostars
variation-graph genome vg vgteam
updated 3 months ago by 40k • written 4.0 years ago by ★ 2.4k
8
votes
0
replies
2.4k
views
News: De Novo Genome Assembly Using Next-Generation Sequence Data (8 - 10 February 2016)
Assembly Workshop DNA-Seq
updated 12 months ago by 40k • written 8.0 years ago by 10k
8
votes
2
replies
2.2k
views
News: The bioinformatics chat is a new podcast about bioinformatics. In the first episode we discuss Scallop, a transcriptome assembler
podcast Assembly RNA-Seq
updated 4 months ago by 40k • written 6.5 years ago by ▴ 120
8
votes
6
replies
17k
views
News: Bioinformatics PhD Programs in the US
education PhD
updated 4 months ago by 40k • written 5.8 years ago by ▴ 70
8
votes
2
replies
794
views
News: Save time and money through improved onboarding of your NGS data scientists
NGS data-analysis
updated 6 months ago by 40k • written 3.7 years ago by 10k
7
votes
8
replies
1.6k
views
News: A new Stack Exchange site for Research Computing
unix linux
updated 4 months ago by 40k • written 5.8 years ago by ▴ 690
7
votes
1
reply
2.6k
views
News: Integrated Genome Browser version 8.3 released - new native installer
ChIP-Seq RNA-Seq igv igb
updated 18 months ago by 40k • written 8.7 years ago by ★ 2.4k
7
votes
3
replies
4.4k
views
News: Pathway Commons 2 - Search And Visualize Public Biological Pathway Information. Single Point Of Access.
api cytoscape
updated 7 months ago by 40k • written 9.8 years ago by ★ 1.2k
7
votes
0
replies
907
views
News: New layout for NCBI BLAST FTP database site starting February 4, 2020
ftp blast blast_index blast-plus
updated 3 months ago by 40k • written 3.7 years ago by 134k
7
votes
0
replies
1.9k
views
News: CIViC Hackathon and Curation Jamboree at NGS in Molecular Pathology Meeting, NKI, Nov 30 - Dec 2
meeting civic hackathon NKI
updated 5 months ago by 40k • written 7.1 years ago by ▴ 290
7
votes
5
replies
2.4k
views
News: Physalia-Course: Introduction to Linux and workflows for biologists (Berlin)
next-gen Unix Assembly alignment
updated 4 months ago by 40k • written 6.5 years ago by ★ 2.4k
7
votes
4
replies
2.5k
views
News: Boston Ma Us Area Folks: Software Carpentry Workshop For Women In Science Coming Up
python training
updated 7 months ago by 40k • written 10.5 years ago by 11k
7
votes
0
replies
3.1k
views
News: Ncbi E-Utilities Now Provides Output In Json Format (Einfo, Esearch, And Esummary Only, For Now)
ncbi format eutils entrez
updated 13 months ago by 40k • written 9.6 years ago by 157k
7
votes
1
reply
549
views
News: NGSymposium - Conference in Computational Biology, 23-24.09
ML statistics conference ngschool
16 months ago by kzkedzierska ▴ 290
7
votes
1
reply
3.0k
views
News: A Multi-Split Mapping Algorithm For Circular Rna, Splicing, Trans-Splicing, And Fusion Detection
ngs mapping
updated 7 months ago by 40k • written 9.6 years ago by 10k
7
votes
3
replies
1.7k
views
News: New NCBI Datasets home and documentation pages provide easier access
ncbi gene SARS-CoV-2 genome
updated 2.4 years ago by 98k • written 2.4 years ago by ▴ 50
7
votes
2
replies
2.1k
views
News: Upcoming Hands-On Workshop: microRNA Analysis Using Next-Generation Sequencing
NGS microRNA workshop
updated 5 months ago by 40k • written 7.3 years ago by 10k
7
votes
0
replies
1.4k
views
News: First PacBio Sequel data available
pacbio sequel
updated 5 months ago by 40k • written 7.0 years ago by 134k
7
votes
0
replies
1.7k
views
News: Us Ethics Panel Reports On Dna Sequencing And Privacy
next-gen
updated 7 months ago by 40k • written 11.0 years ago by 11k
7
votes
3
replies
3.7k
views
News: Visualizing genomic data: techniques and challenges. Our interview with Dr. Malachi Griffith, Dr. Obi Griffith and Mr. Zachary Skidmore (The Griffith…
R RNA-Seq genome NGSdata
updated 4 months ago by 40k • written 6.3 years ago by ★ 2.4k
7
votes
8
replies
3.9k
views
News: Next-Gen Sequencing Tutorials On Cubelp (Cranfield Bioinformatics Electronic Learning Platform)
genome chip-seq snp assembly
updated 12 months ago by 40k • written 10.1 years ago by ▴ 610
7
votes
0
replies
2.8k
views
News: Correction for "A benchmark for RNA-seq quantification pipelines"
RNA-seq
updated 5 months ago by 40k • written 7.3 years ago by ▴ 70
7
votes
2
replies
2.2k
views
News: Annotation of Zebrafish pri-miRNAs promoters and CAGE-seq detected active Drosha processing events.
Drosha-processing moRNAs pri-miRNAs zebrafish
updated 14 months ago by 40k • written 7.8 years ago by ★ 2.4k
7
votes
11
replies
1.7k
views
News: Bringing the power of Big Data to biomedical researchers
NGS biomedical-research
updated 4 months ago by 40k • written 6.2 years ago by ▴ 100
6
votes
5
replies
5.0k
views
News: NCBI MagicBlast ( Short read mapper )
blast ncbi short-read mapper hts
updated 5 months ago by 40k • written 7.1 years ago by 157k
6
votes
1
reply
941
views
News: uniprot.org is moving from HTTP to HTTPS
protein database uniprot
updated 4 months ago by 40k • written 5.8 years ago by ★ 2.3k
6
votes
4
replies
970
views
News: Upcoming online training courses
Python R
2.1 years ago by carlopecoraro2 ★ 2.4k
6
votes
1
reply
2.4k
views
News: FastQC Version 0.11.1 released
genome next-gen-sequencing
updated 6 months ago by 40k • written 9.3 years ago by ★ 2.2k
6
votes
2
replies
2.0k
views
News: RNA-Seq Data Analysis Workshop in Leipzig, Germany (09 - 12 October 2017)
NGS RNA-Seq workshop
updated 4 months ago by 40k • written 6.2 years ago by 10k
6
votes
9
replies
4.0k
views
News: 1000 Genomes : The Initial Phase 3 variant list and phased genotypes.
1000genomes
updated 6 months ago by 40k • written 9.3 years ago by 157k
6
votes
7
replies
1.9k
views
News: NCBI wants to remove quality scores from SRA
quality-scores trimming Assembly genome SRA
updated 3 months ago by 40k • written 3.2 years ago by ▴ 40
6
votes
0
replies
1.4k
views
News: Now Live: precisionFDA Hidden Treasures - Warm Up Challenge
next-gen-sequencing
updated 4 months ago by 40k • written 6.2 years ago by ▴ 90
6
votes
1
reply
1.8k
views
News: Contest: Antibody Marathon Match Problem: ABCSpeedup
contest
updated 6 months ago by 40k • written 8.7 years ago by 157k
6
votes
0
replies
856
views
News: CWL user support moving to https://cwl.discourse.group/; many thanks to Biostars for over 4 years of support!
cwl thanks
updated 3 months ago by 40k • written 3.9 years ago by ★ 1.9k
6
votes
1
reply
1.9k
views
News: Massively Differential Bias Between Two Widely Used Illumina Library Preparation Methods For Small Rna Sequencing
illumina RNA-seq
updated 7 months ago by 40k • written 9.8 years ago by 10k
6
votes
0
replies
2.6k
views
News: New Methods Section In Plos Computational Biology
publications plos
updated 7 months ago by 40k • written 10.6 years ago by 18k
6
votes
0
replies
444
views
News: NGSchool2022: Machine Learning in Computational Biology
summer machine learning school ngschool ML statistics
17 months ago by kzkedzierska ▴ 290
6
votes
1
reply
2.7k
views
News: GMOD Online Training 2014 coming up
galaxy chado gmod annotation
updated 6 months ago by 40k • written 9.5 years ago by 11k
1,000 results • Page 3 of 20
Recent Votes
Comment: ncbi error report log for validate fastq issue
Comment: ncbi error report log for validate fastq issue
A: Bowtie2 MAPQ difference using local vs end-to-end alignment
C: Bowtie2 MAPQ difference using local vs end-to-end alignment
Answer: TPM RNA-seq data for differential expression analysis
A: Error When Installing Emboss
Answer: Subclustering of intergated cells from scRNA-seq data
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Comment: Assessing Rockhopper's output by shelkmike ▴ 980
I used Rockhopper only for bacterial genomes assembled into circular contigs or circular scaffolds.
Comment: Unable to install HorvathMammalMethylChip40manifest packages by ATpoint 77k
There is no package of that name in CRAN or Bioconductor. Where do you have it from, so which tutorial you follow?
Comment: Subclustering of intergated cells from scRNA-seq data by fifty_fifty ▴ 60
thank you. This is exactly what I was looking for
Answer: Search RCSB with a list of protein names? by Mensur Dlakic ★ 25k
This is not the most elegant solution, but it should work with previous suggestions. In this remote directory: http://ftp.wwpdb.org/p…
Answer: Automate the Splitting of a VCF File by Sample (bcftools) by Ram 40k
The manual says you can split samples out at once using the `+split` plugin. So, `bcftools +split -Oz -o <PATH> file.vcf.gz` should do the …
Comment: differences between trajectories in conditions with Monocle3 or other tools by Amitm ★ 2.2k
Phate (or Monocle) doesn't do UMAP. If you have done UMAP already (using seurat) then you could use the cell barcode to UMAP cluster label …
Comment: Error: cannot open file 2 for reading From Cufflinks Version 2.2.1 When Attempti by Y • 0
I figured out how to make it work. The bams have to be comma separated not just by space: cd "${input_directory_with_associated_bam_fi…
Comment: Search RCSB with a list of protein names? by Joseph • 0
Hey, this is so close to what I'm looking for - I clarified in my edit. This is a great way to batch download lots of PDBs in RCSB by their…
Comment: Search RCSB with a list of protein names? by Joseph • 0
This is a really neat package, but I don't think it does exactly what I want, so I've clarified my question. This seems like it grabs a PD…
Comment: How to get the gft file to run velocyto for velocity analysis? by Chris ▴ 200
Yes, thank you! I figured it out but I got an error: velocyto run10x -m Hg38_rmsk.gtf WT/outs /cellranger/reference/refdata-cellranger…
Comment: How to get the gft file to run velocyto for velocity analysis? by bk11 ★ 1.3k
You can get from here- [UCSC][1]. Just click on get output botton. [1]: https://genome.ucsc.edu/cgi-bin/hgTables?hgsid=611454127_NtvlaW…
Answer: Search RCSB with a list of protein names? by bk11 ★ 1.3k
You can use `Bio3D` an R Package for this. [http://thegrantlab.org/bio3d_v2/tutorials/installing-bio3d][1] [http://thegrantlab.org/b…
Comment: Search RCSB with a list of protein names? by GenoMax 134k
You can download various types of bulk data files from RCSB here: https://www.rcsb.org/docs/programmatic-access/file-download-services You…
Comment: How to perform hypothesis testing on contingency tables and compare with the nul by RK • 0
Thank you so much
Comment: How to perform hypothesis testing on contingency tables and compare with the nul by Jean-Karim Heriche 26k
So just do a regular chi-squared test as I explained above. The null hypothesis is that there are as many mutated/unmutated trinucleotides …
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