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1,000 results • Page
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News:
Bioinformatics Contest 2020. Call for problems
contest
updated 3 days ago by
Ram
39k • written 3.7 years ago by
alserg
▴ 830
22
votes
3
replies
2.7k
views
News:
Biostar: 10,000 Question Milestone
meta
updated 3 months ago by
Ram
39k • written 10.0 years ago by
Istvan Albert
98k
0
votes
3
replies
668
views
News:
Nvidia Clara Parabricks is FREE for R&D
nvidia
workflow
gpu
updated 5 months ago by
4galaxy77
2.7k • written 5 months ago by
Pierre Lindenbaum
154k
3
votes
3
replies
3.6k
views
News:
A Tale Of Next Generation Sequencing Platforms: Ion Torrent, Pacific Biosciences And Illumina Miseq
sequencing
updated 3 months ago by
Ram
39k • written 10.8 years ago by
Istvan Albert
98k
9
votes
3
replies
3.0k
views
News:
New Human Genome Assembly (Grch38) Released
human-genome
assembly
updated 3 months ago by
Ram
39k • written 9.5 years ago by
Pierre Lindenbaum
154k
6
votes
2
replies
1.6k
views
News:
Belly Button Biodiversity Project Requests Your Analysis
biodiversity
project
updated 3 months ago by
Ram
39k • written 10.6 years ago by
Mary
11k
2
votes
2
replies
1.2k
views
News:
R 3.2.3 is out
R
updated 8 weeks ago by
Ram
39k • written 7.4 years ago by
Antonio R. Franco
★ 5.1k
0
votes
2
replies
519
views
News:
Reduced functionality of Ensembl and Ensembl Genomes on the 13th November
ensembl
updated 15 hours ago by
Ram
39k • written 3.6 years ago by
Emily
23k
1
vote
2
replies
613
views
News:
Online training - Introduction to Nextflow
Bionfirmatics
Pipeline
Workflow
Netflow
10 months ago by
carlopecoraro2
★ 2.3k
0
votes
2
replies
728
views
News:
20% Off - Next-Generation Sequencing Data Analysis: A Practical Introduction (May 3-5, 2023 in Munich, Germany)
NGS
DNA-Seq
variant-calling
RNA-Seq
workshop
5 weeks ago by
David Langenberger
9.9k
0
votes
2
replies
1.3k
views
News:
Webinar on fast and accurate DNA variant calling on 26 Apr 2017
variant-calling
SNP
gatk
strand-ngs
alignment
updated 25 days ago by
Ram
39k • written 6.1 years ago by
Genomics
▴ 70
5
votes
2
replies
4.3k
views
News:
GeneSCF (Gene Enrichment Tool): Advice to users
kegg
GeneSCF
GO
annotation
updated 3 months ago by
Ram
39k • written 6.4 years ago by
EagleEye
7.5k
0
votes
2
replies
765
views
News:
Online Course - A Practical Introduction to NGS Data Analysis (February 01-03, 2023)
NGS
DNAseq
variant-calling
RNAseq
4 months ago by
David Langenberger
9.9k
2
votes
2
replies
2.0k
views
News:
De Novo Transcriptome Analysis (Assembly and Differential Gene Expression in Non-Model Organisms)
Assembly
RNA-Seq
updated 8 weeks ago by
Ram
39k • written 6.9 years ago by
JohnBlue81
▴ 310
0
votes
2
replies
1.4k
views
News:
Free Webinar: Sequence alignment: the central step in reference based Next Generation Sequencing data analysis
next-gen
SAM
alignment
sangenix
updated 7 weeks ago by
Ram
39k • written 6.4 years ago by
Persistent LABS
▴ 750
0
votes
2
replies
840
views
News:
Training - Introduction to Deep Learning
DeepLearning
Python
MachineLearning
Programming
News
2.8 years ago by
carlopecoraro2
★ 2.3k
6
votes
2
replies
2.3k
views
News:
Interested in de novo transcriptome assembly using Trinity? Check out our interview to Brian Haas
alignment
RNA-Seq
updated 7 weeks ago by
Ram
39k • written 6.2 years ago by
carlopecoraro2
★ 2.3k
6
votes
2
replies
902
views
News:
Temporarily reduced functionality of Ensembl and Ensembl Genomes
Ensembl
updated 10 days ago by
Ram
39k • written 4.3 years ago by
Ben_Ensembl
★ 2.2k
0
votes
2
replies
2.4k
views
News:
PART FUNDED SCHOLARSHIPS - Coding, data management, and Shiny applications using RStudio for evolutionary biologists and ecologists - May 2017
Rstudio
R
Shiny
updated 25 days ago by
Ram
39k • written 6.2 years ago by
oliverhooker
▴ 110
1
vote
2
replies
2.1k
views
News:
Workshop: Metagenomics, Metatranscriptomics, and multi'omics for microbial community studies (9-13 April 2018 in Berlin)
Metatranscriptomics
Metagenomics
updated 17 days ago by
Ram
39k • written 5.3 years ago by
carlopecoraro2
★ 2.3k
4
votes
2
replies
1.1k
views
News:
Hands-On Workshop: How to use bisulfite-treated sequencing to study DNA methylation (BS-Seq, Bisulfite-Seq, WGBS)
Workshop
methylation
bisulfite
updated 18 hours ago by
Ram
39k • written 3.7 years ago by
Lars
▴ 970
1
vote
2
replies
416
views
News:
Gene Set Enrichment Analysis in R/Bioconductor
Gene-Set-Enrichment-Analysis
R
Cancer-Genomics
GSEA
7 months ago by
carlopecoraro2
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2
votes
2
replies
960
views
News:
Bioinformatics Solutions on AWS
Cloud
AWS
updated 23 months ago by
Ram
39k • written 2.1 years ago by
Jillian
▴ 20
9
votes
2
replies
14k
views
News:
Bio-Linux 8 is now available
genome
rna-seq
alignment
Assembly
next-gen
updated 18 months ago by
Ram
39k • written 8.9 years ago by
rtliu
★ 2.2k
2
votes
2
replies
522
views
News:
ISO usability testers for NCBI comparative genome viewer
comparative
eukaryotic
alignment
pangenome
16 months ago by
SanjidaR_NCBI
▴ 40
1
vote
2
replies
1.7k
views
News:
Course: Applied Statistics and Bioinformatics with R and Bioconductor
Statistics
R
Metagenomics
Bioconductor
updated 21 days ago by
Ram
39k • written 5.9 years ago by
carlopecoraro2
★ 2.3k
1
vote
2
replies
1.5k
views
News:
Webinar: Generating interpretable maps of single cell chromatin accessibility and RNA-seq datasets with Similarity Weighted Nonnegative Embedding
scRNAseq
webinar
rna-seq
single-cell
updated 6 days ago by
Ram
39k • written 4.1 years ago by
sonpham
▴ 580
1
vote
2
replies
890
views
News:
Sage Bionetworks is seeking researchers and data scientists to participate in software user research!
research
software
updated 10 days ago by
Ram
39k • written 4.3 years ago by
duminda.aluthgamage
▴ 30
2
votes
2
replies
1.9k
views
News:
Briefings In Bioinformatics International, Interdisciplinary, Multi-Level Bioinformatics Training And Education
education
updated 3 months ago by
Ram
39k • written 9.7 years ago by
Pierre Lindenbaum
154k
2
votes
2
replies
2.5k
views
News:
ENCODE 2015: Research Applications and Users Meeting
workshop
mouse-encode
encode
updated 10 weeks ago by
Ram
39k • written 8.0 years ago by
Alex Reynolds
35k
0
votes
2
replies
1.0k
views
News:
:: FINAL CALL :: Next-Generation Sequencing Data Analysis: A Practical Introduction (December 12-14, 2022 in Munich, Germany)
rnaseq
dnaseq
sequencing
ngs
workshop
6 months ago by
David Langenberger
9.9k
2
votes
2
replies
1.2k
views
News:
Course: Applied Statistics and Bioinformatics with R and Bioconductor. (Berlin, 22-26 January 2018)
R
next-gen-sequencing
updated 19 days ago by
Ram
39k • written 5.6 years ago by
carlopecoraro2
★ 2.3k
3
votes
2
replies
2.4k
views
News:
Samtools/htslib v1.2 released
htslib
samtools
bcftools
updated 11 weeks ago by
Ram
39k • written 8.3 years ago by
Devon Ryan
103k
0
votes
2
replies
1.7k
views
News:
Webinar: Multi-omics: Challenges, opportunities and application to biomarker discovery
biomarker
next-gen-sequencing
multiomics
cancer
updated 24 days ago by
Ram
39k • written 5.9 years ago by
Persistent LABS
▴ 750
0
votes
2
replies
452
views
News:
Course - Metagenomics, metatranscriptomics, and multi'omics for microbial community Studies
Metagenomics
Metatranscriptomics
Multiomics
updated 11 weeks ago by
Ram
39k • written 11 weeks ago by
carlopecoraro2
★ 2.3k
1
vote
2
replies
451
views
News:
Course: Network Analysis in R
NetworkAnalyis
R
4 months ago by
carlopecoraro2
★ 2.3k
2
votes
2
replies
1.2k
views
News:
GeNets: a unified web platform for network-based genomic analyses
networks
pathways
RNA-Seq
visualization
updated 12 days ago by
Ram
39k • written 5.0 years ago by
ivivek_ngs
★ 5.2k
2
votes
2
replies
1.7k
views
News:
BioC 2015, Bioconductor Annual Conference, July 20-22, Seattle, WA
Bioconductor
Conference
updated 11 months ago by
Ram
39k • written 8.1 years ago by
Martin Morgan
★ 1.6k
6
votes
2
replies
1.9k
views
News:
RNA-Seq Data Analysis Workshop in Leipzig, Germany (09 - 12 October 2017)
NGS
RNA-Seq
workshop
updated 21 days ago by
Ram
39k • written 5.9 years ago by
David Langenberger
9.9k
1
vote
2
replies
1.2k
views
News:
Webinar on Diagnosis of Rare Diseases using NGS Based Multi-gene Testing- Case studies by Dr.Aparna Ganapathy on 18 Apr 2018
variant-calling
rare-disease
dna-seq
strand-ngs
updated 14 days ago by
Ram
39k • written 5.2 years ago by
Genomics
▴ 70
15
votes
2
replies
10k
views
News:
Breaking News - Illumina MiniSeq
next-gen-sequencing
updated 10 months ago by
Ram
39k • written 7.4 years ago by
IV
★ 1.3k
5
votes
2
replies
3.4k
views
News:
Tuesday 10/29 Live Tour Of New Features In Integrated Genome Browser 8
genome-browser
RNA-seq
ChIP-seq
updated 3 months ago by
Ram
39k • written 9.6 years ago by
Ann
★ 2.3k
4
votes
2
replies
2.9k
views
News:
NCBI NOW (Next generation sequencing Online Workshop) October 13 - 23 , 2015
NCBI
DNA-Seq
NGS
RNA-Seq
updated 9 weeks ago by
Ram
39k • written 7.7 years ago by
rtliu
★ 2.2k
2
votes
2
replies
2.4k
views
News:
Interview Dealing with RADseq data: some tips from our instructors
NGS
RADseq
updated 19 days ago by
Ram
39k • written 5.6 years ago by
carlopecoraro2
★ 2.3k
0
votes
2
replies
606
views
News:
ClusteredNR NCBI BLAST database provides faster searches and more informative BLAST results
NCBI
BLAST
13 months ago by
PeterC_NCBI
▴ 260
0
votes
2
replies
1.9k
views
News:
RNA-Seq Data Analysis Workshop in Berlin, Germany (13 - 16 March 2018)
NGS
RNA-Seq
sequencing
updated 18 days ago by
Ram
39k • written 5.4 years ago by
David Langenberger
9.9k
11
votes
2
replies
2.2k
views
News:
Ensembl 76 is out
Genome-browser
Ensembl
updated 17 months ago by
Ram
39k • written 8.8 years ago by
Emily
23k
0
votes
2
replies
1.5k
views
News:
M.Phil Program in Bioinformatics
education
career
updated 11 weeks ago by
Ram
39k • written 7.6 years ago by
rrojha143
• 0
0
votes
2
replies
3.1k
views
News:
Course: Practical GWAS using Linux and R. 23-27 October 2017, Berlin (Germany)
GWAS
Linux
R
updated 20 days ago by
Ram
39k • written 5.8 years ago by
carlopecoraro2
★ 2.3k
5
votes
2
replies
1.3k
views
News:
Google Dataset Search
google
updated 12 days ago by
Ram
39k • written 4.8 years ago by
Pierre Lindenbaum
154k
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Answer: Assigned taxonomy after dada2 only "NAs" or "Mitochondria"
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Comment: Differential protein expression analysis
by
dsull
★ 4.2k
Yes, you need to log-transform. I've had a good experience using limma for proteomics analyses (limma uses a moderated t-test).
Answer: Assigned taxonomy after dada2 only "NAs" or "Mitochondria"
by
mattze731
▴ 10
Never mind. Someone had put all the 16S files into the ITS folder and vice versa. After using the 16S dada2 pipeline on the actual 16S file…
Comment: Getting Pairwise Sequence Alignment Score With Biopython
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Dear Alexander, to answer 2) first: This is just a fasta file that you can obtain essentially from every multiple sequence alignment soft…
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Batches for what? Processing/sequencing, what data are we talking about? If this is indeed paired then you basically must keep samples of a…
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That's a really good question. Short version: not much to my knowledge, aside from looking at it, or filtering it (as it's a PAF like forma…
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BTW - Most TCGA cancer types do have normals amoungst the samples.
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i.sudbery
17k
The assumption of these studies is that any batch effect within a batch affects both treatment and control equally, so that when you divide…
Answer: Stratified sample assignment for analysis
by
Vincent Laufer
★ 2.9k
First, you didn't tell us what kind of data you are working with. For arguments sake, I'll assume bulk RNA-seq. Generally, your options …
Comment: VEP tab/vcf - Different output
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Ben_Ensembl
★ 2.2k
You can use the ---show_ref_allele flag when running the VEP query. This will add the reference allele in the output and is mainly useful f…
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For R-users might be interesting to look at notebook "CAFA5: train set GO terms" https://www.kaggle.com/code/antoninadolgorukova/cafa5-trai…
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by
Alexander
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Thanks for sharing ! Just these days I am trying to wrap my mind on protein alignments. I wonder: 1) "PID" in your post is "percentage o…
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fracarb8
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You should read the [cellranger documentation][1] to understand how the analysis are performed. For example, it uses `graphclust` for clust…
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Hi, I don't know if there are tools designed to predict pseudogenes, but If i understand correctly from your post you could predict all th…
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Jonathan Lefebre
▴ 70
Maybe quite late, but in case other people are looking for this. Pairwise sequence identity can be easily calculated using basic python fun…
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ATpoint
72k
Yes, that is what methylkit is for. See my answer.
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