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26 results • Page
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105
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News:
New NCBI Datasets APIs to Replace Old Ones
NCBI
API
Datasets
2 days ago by
PeterC_NCBI
▴ 330
0
votes
1
reply
233
views
News:
LAST CALL: Online Course - A Practical Introduction to NGS Data Analysis - October 23-25, 2023
DNA-seq
Workshop
RNA-seq
2 days ago by
David Langenberger
10k
0
votes
0
replies
108
views
News:
RADseq data analysis course
RADseq
Phylogenomics
Bioinformatics
Populationgenomics
Stacks
3 days ago by
carlopecoraro2
★ 2.4k
0
votes
1
reply
184
views
News:
EMBL-EBI virtual course | Introduction to RNA-seq and functional interpretation
RNA-seq
updated 5 days ago by
Ram
40k • written 5 days ago by
Rebecca
• 0
1
vote
0
replies
164
views
News:
Online Training - Bioinformatics Pipeline Development with Nextflow (November 15-17, 2023)
nextflow
automation
pipeline
development
5 days ago by
David Langenberger
10k
2
votes
1
reply
219
views
News:
Successful NCBI NIAID Codeathon on VCF Files in SARS-CoV-2 Genomics
NCBI
Codeathon
updated 3 days ago by
chrchang523
10k • written 6 days ago by
PeterC_NCBI
▴ 330
0
votes
0
replies
162
views
News:
Workshop - Single-Cell RNA-Seq Data Analysis: A Practical Introduction (November 8-10, 2023 in Berlin)
workshop
scRNA-Seq
RNA-Seq
single-cell
updated 6 days ago by
Ram
40k • written 6 days ago by
David Langenberger
10k
0
votes
0
replies
156
views
News:
Research Breakthrough in Identifying Viral Escape Mutations for Improved Therapeutic Design
sequence-analysis
sars-cov-2
spike-protein
updated 6 days ago by
Ram
40k • written 6 days ago by
Prem
• 0
0
votes
0
replies
137
views
News:
Course: Data Manipulation and Visualisation with Python
Python
Data-Visualization
Data-Manipulation
updated 8 days ago by
Ram
40k • written 8 days ago by
carlopecoraro2
★ 2.4k
0
votes
2
replies
572
views
News:
The Practice of RADseq: Population Genomics Analysis with Stacks (RADS02) Early bird deadline approaching - 20th September
population-genomics
radseq
stacks
updated 8 days ago by
Dave Carlson
★ 1.4k • written 9 days ago by
oliverhooker
▴ 110
0
votes
0
replies
138
views
News:
Course - GLMMs in R
GLMM
Mixed-Models
updated 9 days ago by
Ram
40k • written 9 days ago by
carlopecoraro2
★ 2.4k
0
votes
0
replies
138
views
News:
Introduction to Nextflow (2 seats left)
Nextflow
Workflow
Reproducibility
updated 9 days ago by
Ram
40k • written 9 days ago by
carlopecoraro2
★ 2.4k
0
votes
0
replies
140
views
News:
Genomic Prediction course
Bioinformatics
GWAS
GenomicPrediction
10 days ago by
carlopecoraro2
★ 2.4k
0
votes
0
replies
124
views
News:
course - Population Genomics Using Ancient DNA Data
Bioinformatics
PopulationGenomics
Genomics
aDNA
10 days ago by
carlopecoraro2
★ 2.4k
3
votes
5
replies
862
views
News:
Ensembl Release 104 and newer GTF files no longer have genes sorted by position
Ensembl
GTF
updated 14 days ago by
alejandrogzi
▴ 30 • written 10 months ago by
dlaehnemann
▴ 30
0
votes
0
replies
136
views
News:
NCBI ClinVar XML update to accomodate somatic variants
SNP
NCBI
XML
ClinVar
15 days ago by
PeterC_NCBI
▴ 330
0
votes
0
replies
111
views
News:
Workshop on Virtual Screening on Drug Discovery from scratch (15-16 September, 2023 : 07.00 - 09.00 PM IST)
bioinformatics
screening
virtual
updated 15 days ago by
GenoMax
134k • written 15 days ago by
sriv.reetesh
• 0
0
votes
0
replies
119
views
News:
RNAseq data analysis with R/Bioconductor
R
RNAseq
Bioconductor
15 days ago by
carlopecoraro2
★ 2.4k
0
votes
0
replies
145
views
News:
Course - RNAseq in non-model organisms
R
RNAseq
DifferentialExpressionAnalysis
Bioconductor
18 days ago by
carlopecoraro2
★ 2.4k
4
votes
2
replies
258
views
News:
Standalone NCBI ClusteredNR database now available for download
ClusteredNR
NCBI
standalone
BLAST
22 days ago by
PeterC_NCBI
▴ 330
0
votes
0
replies
133
views
News:
Virtual Variant Detection Workshop: September 11-14, 2023
tutorial
detection
genomics
workshop
variant
22 days ago by
mia.nahom
▴ 10
0
votes
0
replies
144
views
News:
Introduction to Deep Learning for Biologists course
Python
Deep-Learning
Machine-Learning
updated 22 days ago by
Ram
40k • written 22 days ago by
carlopecoraro2
★ 2.4k
0
votes
0
replies
129
views
News:
Course - Reproducibility Data Analysis with R
R
renv
VersionControl
Reproducibility
22 days ago by
carlopecoraro2
★ 2.4k
0
votes
0
replies
201
views
News:
Online course: Easily analyze single cell RNA-seq data with Cellenics®, a user-friendly web-based platform
scRNA-seq
training
single-cell-RNA-seq
updated 26 days ago by
Ram
40k • written 26 days ago by
Sara
• 0
0
votes
0
replies
254
views
News:
Join Our Online Course: Incorporating Paleogenomes into Evolutionary Genomics Studies
Paleogenomics
Genomics
aDNA
Adaptation-Genomics
updated 27 days ago by
Ram
40k • written 27 days ago by
carlopecoraro2
★ 2.4k
0
votes
0
replies
133
views
News:
Course on Phylogenomics
Phylogenetic-Inference
Divergence-Time-Estimation
Genomics
Phylogenomics
updated 27 days ago by
Ram
40k • written 27 days ago by
carlopecoraro2
★ 2.4k
26 results • Page
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A: What'S The Difference Between Cds And Orf?
What'S The Difference Between Cds And Orf?
Answer: Filtering transcription factor and HOMER and ENCODE
Answer: Apple Silicon M1 for sequencing and base calling in MinION Mk1B Oxford Nanopore
Answer: Number of accessible regions included by DESeq2 to generate the PCA plot with th
Updated List of Unix tutorials 2023
Suggested tool or algorithm for accessing pathogenicity and prioritization of somatic INDELs in cancer research
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Comment: Network analysis with cytoscape
by
Chris
▴ 180
Sure, the network represents the different expressed genes in my RNA-seq. I choosed string protein query.
Comment: Network analysis with cytoscape
by
Yogi
▴ 40
A few questions. 1. What does the network represent? 2. Can you insert a high level picture of the network (or pictures) if you want to zo…
Answer: Chip-Seq and correlation of bam file
by
jared.andrews07
★ 15k
Use [deepTools' plotCorrelation function](https://deeptools.readthedocs.io/en/develop/content/tools/plotCorrelation.html).
Answer: Transcription factor co-localization p-values
by
jared.andrews07
★ 15k
[regioneR](https://bioconductor.org/packages/release/bioc/html/regioneR.html) seems to be what you want.
Comment: Complex multifactorial DE analysis with limma/edgeR based on rnaseq data
by
LChart
3.4k
> Our major biological questions are: to have a general comparison of cancer vs normal “treatment” conditions; In addition if doable, to co…
Comment: Which function is best for pathway analysis?
by
Chris
▴ 180
Thanks @luffy! Great material but seem they didn't mention how to customize the background genes depend on our data.
Comment: CollectRnaSeqMetrics (Picard) output to convert FeatureCounts into TPM
by
camillab.
▴ 140
I have calculate from this [tutorial][1]. so basically it retrieve the normalized counts matrix using `Deseq2` . Do you think it is correct…
Comment: Apple Silicon M1 for sequencing and base calling in MinION Mk1B Oxford Nanopore
by
GenoMax
134k
`dorado` can't demultiplex data as yet (v.0.3.4). Also no adapter trimming. So something to keep in mind if you are switching. To address …
Comment: Frustrated with DEA results
by
dsull
★ 4.7k
Let the data speak. If there's no difference, then there's no difference. Human clinical data is always messy and unpredictable, especiall…
Comment: Apple Silicon M1 for sequencing and base calling in MinION Mk1B Oxford Nanopore
by
Ram
40k
I don't think they bought the Mac Studio just for the MiniON. If they did, that might be overkill. All things considered, I'd prefer an App…
Comment: Apple Silicon M1 for sequencing and base calling in MinION Mk1B Oxford Nanopore
by
ATpoint
77k
Wondering why investing all that money for such an overpriced piece of hardware. You could get an equivalent Windows or Linux workstation f…
Answer: Apple Silicon M1 for sequencing and base calling in MinION Mk1B Oxford Nanopore
by
Christopher
▴ 10
I'm using a Mac Studio with M1 Ultra chip to sequence with a MinION Mk1B now and it's working great! Fast basecalling and adaptive sequenci…
Comment: ncbi error report log for validate fastq issue
by
GenoMax
134k
You may want to use `--split-files` instead. With your `--split-spot` option looks like you end up with interleaved data files. Unless you …
Comment: Extract Total Non-Overlapping Exon Length Per Gene With Bioconductor
by
Ram
40k
Nope, I kinda gave up. I got to the image on what fragment size is (https://www.biostars.org/p/106291/#106344) but cannot figure out how to…
Comment: ncbi error report log for validate fastq issue
by
1769mkc
★ 1.1k
I got it working after i updated the sra lite option while using vdb-config -i the output is what i see like this docker run -t -…
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