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23 results • Page
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News:
2023 EMBL Courses and Conferences
EMBL
EMBLMalaria
EESImaging
5 days ago by
EMBL Events
• 0
0
votes
0
replies
83
views
News:
Online training -Getting the most out of R
R
Science
analysis
Data
6 days ago by
carlopecoraro2
★ 2.1k
0
votes
0
replies
88
views
News:
Online training - Cancer Genomics in R
Bioinformatics
Genomics
Cancer
R
6 days ago by
carlopecoraro2
★ 2.1k
0
votes
0
replies
82
views
News:
Online training - DNA methylation in plants and animals
OxfordNanopore
DNAMethylation
BSseq
longreads
PacBio
8 days ago by
carlopecoraro2
★ 2.1k
0
votes
0
replies
123
views
News:
3rd edition of the Analysis of RNA sequencing data with R/Bioconductor course.
RNAseq
Bioconductor
R
26 days ago by
carlopecoraro2
★ 2.1k
4
votes
1
reply
1.9k
views
News:
2014 ISCB Wikipedia Article Competition announcement
ISCB
competition
Wikipedia
written 8.0 years ago by
Ben
★ 2.0k
1
vote
2
replies
255
views
News:
Online training - Introduction to Nextflow
Bionfirmatics
Pipeline
Workflow
Netflow
8 days ago by
carlopecoraro2
★ 2.1k
0
votes
0
replies
2.1k
views
News:
DEADLINE 18th of March: 2nd Annual Training Course on Viral Bioinformatics and Genomics
virus
genomics
virology
updated 18 days ago by
Ram
36k • written 6.6 years ago by
Joseph Hughes
★ 3.0k
0
votes
0
replies
1.4k
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News:
Live Webinar on Streamlining large scale analysis using the Strand NGS Pipeline Manager on 24 Feb 2016.
RNA-Seq
DNA-seq
strand-ngs
ChIP-Seq
updated 20 days ago by
Ram
36k • written 6.5 years ago by
Genomics
▴ 70
1
vote
1
reply
2.1k
views
News:
Bioinformatics for Cancer Genomics Workshop
Cancer-Genomics
updated 19 days ago by
Ram
36k • written 6.6 years ago by
meyer.ann
▴ 30
0
votes
0
replies
1.6k
views
News:
Informatics and Statistics on Metabolomics Workshop
workshop
updated 19 days ago by
Ram
36k • written 6.6 years ago by
meyer.ann
▴ 30
7
votes
2
replies
2.0k
views
News:
Annotation of Zebrafish pri-miRNAs promoters and CAGE-seq detected active Drosha processing events.
Drosha-processing
moRNAs
pri-miRNAs
zebrafish
updated 13 days ago by
Ram
36k • written 6.7 years ago by
Chirag Nepal
★ 2.3k
15
votes
2
replies
9.9k
views
News:
Breaking News - Illumina MiniSeq
next-gen-sequencing
updated 15 days ago by
Ram
36k • written 6.6 years ago by
IV
★ 1.3k
3
votes
0
replies
6.2k
views
News:
A Bioinformatics Jobs AMA (Ask Me Anything) on Reddit
reddit
r
market
updated 12 days ago by
Ram
36k • written 6.7 years ago by
Leandro Lima
▴ 960
0
votes
4
replies
1.7k
views
News:
What NGS courses would you like us to prepare for 2016? (one week left)
NGS
Survey
Workshop
updated 11 days ago by
Ram
36k • written 6.7 years ago by
David Langenberger
9.8k
0
votes
0
replies
2.2k
views
News:
Apply to Penn State's Online Graduate Certificate in Applied Bioinformatics
learn-bioinformatics-online
genome-sequencing
updated 8 days ago by
Ram
36k • written 6.7 years ago by
fiochettal
▴ 10
0
votes
0
replies
1.4k
views
News:
ecSeq's RNA-Seq Experts - Prof. Dr. Ivo Hofacker
RNA-Seq
NGS
updated 8 days ago by
Ram
36k • written 6.7 years ago by
David Langenberger
9.8k
0
votes
2
replies
2.0k
views
News:
MinION Community Meeting: Thursday Dec 3rd (now live)
minion
updated 8 days ago by
Ram
36k • written 6.7 years ago by
Istvan Albert
94k
1
vote
1
reply
498
views
News:
New knowledge web resource on tuberculosis research: http://tb-portal.esy.es
tuberculosis
updated 7 days ago by
Ram
36k • written 6.7 years ago by
vassialk
▴ 200
0
votes
0
replies
1.6k
views
News:
8th National Symposium cum Workshop on Recent Trends in Structural Bioinformatics and Computer Aided Drug Design [SBCADD 2016]
SNP
alignment
sequence
genome
updated 6 days ago by
Ram
36k • written 6.7 years ago by
perlgopi
• 0
0
votes
0
replies
1.9k
views
News:
Predict Protein Expression in Bacteria
sequence
Assembly
genome
updated 1 day ago by
Ram
36k • written 6.8 years ago by
rutial
▴ 40
4
votes
1
reply
2.0k
views
News:
ENCODE Users' Meeting
encode
ucsc
conference
functional-genomics
ensembl
updated 11 days ago by
Ram
36k • written 7.2 years ago by
Emily
23k
7
votes
0
replies
2.9k
views
News:
Ncbi E-Utilities Now Provides Output In Json Format (Einfo, Esearch, And Esummary Only, For Now)
ncbi
format
eutils
entrez
updated 7 days ago by
Ram
36k • written 8.5 years ago by
Pierre Lindenbaum
148k
23 results • Page
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Recent Votes
Is there a way to convert a .vcf.gz.tbi file back to a .vcf.gz or .vcf file?
Answer: Is there a way to convert a .vcf.gz.tbi file back to a .vcf.gz or .vcf file?
Answer: Is there a way to convert a .vcf.gz.tbi file back to a .vcf.gz or .vcf file?
Comment: InterProScan, Conserved domain database, SMART and PFAM
A: Statistical analysis of non-numerical data
C: Ciri run error
A: Statistical analysis of non-numerical data
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Answer: Are mapped RefSeq, Ensembl, and UniProt IDs pointing to the same protein sequenc
by
LChart
630
This is annoying for gene ids (HGNC, Ensembl, entrez, refseq) as well as proteins (Uniprot, refseq, ensembl). For a *conservative* mapping…
Comment: Is there a better tool for visualizing your variants after annotation than Excel
by
Pierre Lindenbaum
148k
that's puzzling, it's the first time i see that error. Can you please retry with the `--stacktrace` option ? and show me the error trace.
Answer: PC for bioinformatics
by
GenoMax
119k
If your only option is the get a local desktop then read on ... (using core/shared compute resources should always be the first choice, if …
Answer: PC for bioinformatics
by
d-cameron
★ 2.6k
> Any suggestions? Do you have/can you get access to a HPC system run by your institute/nation? Utilising such a resource will not only …
Comment: How can I create plot for unique and redundant miRNA using ggplot?
by
Trivas
▴ 450
You should use the `pivot_longer` function to transform your data into a format that ggplot2 likes. You'll want a column called `reads` and…
Comment: Blastp issue - "No alias or index file found for protein database"
by
GenoMax
119k
Good to hear that you were able to fix the issue.
Comment: Is there a better tool for visualizing your variants after annotation than Excel
by
appropiate
▴ 40
I actually did not have JAVA_HOME set up. After setting it up and adding it to PATH: $ echo ${JAVA_HOME} /usr/lib/jvm/java-11-ope…
Answer: Get one hit per specie in BLASTp
by
brian.fristensky
▴ 280
I'm not certain what you mean by "canonical form", but I'll assume for discussion that you want 1 orthologue from a database such as Unipro…
Comment: Is there a way to convert a .vcf.gz.tbi file back to a .vcf.gz or .vcf file?
by
brunobsouzaa
▴ 740
No, `.tbi` file is just an index of the actual `vcf` file. If someone send that to you, you should ask for the `.vcf.gz` file together with…
Comment: Blastp issue - "No alias or index file found for protein database"
by
Corey
• 0
okay, got it working. for some reason the previous makeblastdb runs weren't making all of the index files... I noted when I did this again …
Comment: Normalize Bimodal Distribution
by
spriyansh29
▴ 30
Thanks, @lchart, appreciate your quick response.
Comment: Normalize Bimodal Distribution
by
LChart
630
You could compute some of the metrics used in this pre-print and compare them between multiple normalization methods: https://www.biorxiv.…
Comment: Normalize Bimodal Distribution
by
spriyansh29
▴ 30
Hi Jared, thanks for your response. I wonder if there is a way to evaluate whether the normalization has been done correctly or not. I can …
Answer: Is there a way to convert a .vcf.gz.tbi file back to a .vcf.gz or .vcf file?
by
Pierre Lindenbaum
148k
No. Converting a tbi to a vcf sounds like "Can you convert this 'Table of contents' to a whole book"
Answer: Is there a way to convert a .vcf.gz.tbi file back to a .vcf.gz or .vcf file?
by
ATpoint
64k
No. An index (that is what tbi is) is just a table of content. You cannot reconstruct every page of a book with just the ToC at hand.
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