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News: The Biostar Handbook. A bioinformatics e-book for beginners.
training handbook
updated 12 days ago by 1.6k • written 6.3 years ago by 97k
1
vote
0
replies
142
views
News: NCBI's IgBLAST version 1.21.0 is now available
IgBLAST BLAST T-Cell NCBI receptors
updated 2 days ago by 127k • written 2 days ago by ▴ 210
0
votes
0
replies
141
views
News: ISMB-affiliated virtual tutorial on Neo4j/Cypher for life sciences
neo4j cypher graph knowledge
3 days ago by Stephen • 0
0
votes
0
replies
123
views
News: Announcing workshop on Declarative Programming in Biology and Medicine (Seattle, Sept. 2023)
medicine declmed declarative icfp precision
3 days ago by Stephen • 0
0
votes
0
replies
92
views
News: Course live online Introduction to Bayesian Analyses using R, May 8th-12th, 2023
bayesian RProject course online
4 days ago by Sole • 0
0
votes
0
replies
102
views
News: course - Reproducibility in Bioinformatics
Docker Reproducibility
updated 3 days ago by 38k • written 5 days ago by ★ 2.3k
0
votes
2
replies
297
views
News: Course - Metagenomics, metatranscriptomics, and multi'omics for microbial community Studies
Metagenomics Metatranscriptomics Multiomics
updated 9 days ago by 38k • written 9 days ago by ★ 2.3k
10
votes
4
replies
581
views
News: RNA-Seq Data Analysis Workshop - Join us in Berlin, Germany from March 27-30, 2023!
NGS transcriptomics workshop
updated 10 days ago by ▴ 30 • written 6 weeks ago by 9.9k
1
vote
0
replies
144
views
News: Summer School in Bioinformatics
Genomics Docker RNA-seq
updated 10 days ago by 38k • written 10 days ago by ★ 2.3k
1
vote
1
reply
247
views
News: Sign-ups for the St. Jude KIDS23 BioHackathon (May 3-5th) open through March 15th!
stjude hackathon
12 days ago by jared.andrews07 ★ 14k
1
vote
0
replies
159
views
News: Course - BIOINFORMATIC ANALYSIS OF TRANSPOSABLE ELEMENTS
Transposable-Elements TE Genome-Assembly
updated 10 days ago by 38k • written 13 days ago by ★ 2.3k
0
votes
0
replies
113
views
News: Environmental Metagenomics course
Environmental-Metagenomics
updated 18 days ago by 38k • written 18 days ago by ★ 2.3k
0
votes
0
replies
134
views
News: Course - GENERALIZED LINEAR MODELS in R
GLMs R GeneralisedLinearModels
19 days ago by carlopecoraro2 ★ 2.3k
1
vote
0
replies
185
views
News: Virtual Single Cell RNA-seq Workshop
single genomics cell expression rna-seq workshop gene
23 days ago by mia.nahom ▴ 10
1
vote
0
replies
193
views
News: Advanced Bayesian statistics in R course
Statistics RegressionModeling Bayesian R
24 days ago by carlopecoraro2 ★ 2.3k
0
votes
0
replies
120
views
News: Course - INTRODUCTION TO THE ANALYSIS OF LONGITUDINAL DATA WITH R
Genomics LongitudinalData R
26 days ago by carlopecoraro2 ★ 2.3k
1
vote
0
replies
197
views
News: The GDC Legacy Archive is retiring soon.
genomic-data-commons tcga gdc
updated 27 days ago by 38k • written 27 days ago by ▴ 750
0
votes
0
replies
159
views
News: course - single-cell RNAseq with R/Bioconductor
Bioconductor single-cell genomics RNAseq
updated 19 days ago by 38k • written 4 weeks ago by ★ 2.3k
5
votes
3
replies
386
views
News: March 13-16: Virtual Nextflow and nf-core training event in 5 languages
nf-core pipeline Nextflow
updated 6 days ago by ▴ 230 • written 5 weeks ago by 3.4k
0
votes
0
replies
204
views
News: Introduction to GWAS course in June
GWAS R
updated 19 days ago by 38k • written 6 weeks ago by ★ 2.3k
1
vote
1
reply
475
views
News: QC for Next Generation Sequencing
NGS QC
updated 17 days ago by 38k • written 17 months ago by • 0
0
votes
0
replies
556
views
News: FINAL CALL :: Online Course - A Practical Introduction to NGS Data Analysis (July 14-16, 2021)
NGS workshop
updated 9 days ago by 38k • written 21 months ago by 9.9k
2
votes
2
replies
498
views
News: Free online seminars/journal club
seminars journal-clubs
updated 17 days ago by 38k • written 2.7 years ago by ▴ 40
0
votes
0
replies
448
views
News: Live webinar (Feb 12 at 12PM Eastern): variant calling for bench scientists
variant-calling wgs wes
updated 12 days ago by 38k • written 3.1 years ago by • 0
8
votes
2
replies
655
views
News: Save time and money through improved onboarding of your NGS data scientists
NGS data-analysis
updated 9 days ago by 38k • written 3.2 years ago by 9.9k
0
votes
0
replies
456
views
News: Training in Variant Analysis @NIH, January 28-31, 2020
Variant-Calling next-gen genome
updated 3 days ago by 38k • written 3.3 years ago by ▴ 130
0
votes
0
replies
808
views
News: Training in genomics workflows for computational novices
bash training workshop cloud
updated 12 days ago by 38k • written 3.8 years ago by • 0
4
votes
0
replies
752
views
News: The BioCompute Object App-a-thon starts on May 14!
standards computation pipeline
updated 5 days ago by 38k • written 3.9 years ago by ▴ 150
0
votes
0
replies
671
views
News: Managing single cell transcriptomics: Course at EMBL-EBI, July 3-5
single-cell RNA-Seq
updated 12 days ago by 38k • written 3.9 years ago by • 0
1
vote
0
replies
785
views
News: Training in Variant Analysis @NIH, USA, April 16-19,2019
genotype phenotype
updated 3 days ago by 38k • written 4.1 years ago by ▴ 130
0
votes
0
replies
953
views
News: Bioinfo-Core Conference Call, February 6th, 2018 (11 am EST USA and corresponding local times around the world)
bioinformatics-core bioinfo-core
updated 5 days ago by 38k • written 5.2 years ago by 127k
5
votes
3
replies
1.3k
views
News: Bioinfo-Core Conference Call, October 17, 2017 (11 am EDT USA, local times around world)
bioinfo-core
updated 5 days ago by 38k • written 5.6 years ago by 127k
0
votes
0
replies
1.3k
views
News: Webinar: Detailed understanding of NGS quality control and file formats
NGS fastqc Quality-control
updated 4 days ago by 38k • written 6.3 years ago by ▴ 750
2
votes
2
replies
2.4k
views
News: ENCODE 2015: Research Applications and Users Meeting
workshop mouse-encode encode
updated 5 days ago by 38k • written 7.8 years ago by 34k
15
votes
18
replies
7.3k
views
6 follow
News: New Free Community Tutorial Website For Bioinformatics Learning
ChIP-seq genome snp RNA-seq
updated 27 days ago by 38k • written 9.7 years ago by ▴ 610
0
votes
2
replies
1.4k
views
News: M.Phil Program in Bioinformatics
education career
updated 9 days ago by 38k • written 7.4 years ago by • 0
5
votes
0
replies
1.2k
views
News: Bioconductor 2015 conference live tweeting and materials
bioconductor R
updated 2 days ago by 38k • written 7.7 years ago by 26k
5
votes
0
replies
1.5k
views
News: New Bioconductor F1000Research Channel for publishing Bioconductor workflows
bioconductor reproducible-research
updated 2 days ago by 38k • written 7.7 years ago by 26k
2
votes
0
replies
2.2k
views
News: The NAR annual Web Server Issue is here..
web-servers
updated 5 days ago by 38k • written 7.7 years ago by ★ 5.0k
6
votes
1
reply
1.7k
views
News: Are protein domains indivisible?
Athropy Domains Proteins
updated 5 days ago by 38k • written 7.8 years ago by ★ 4.2k
0
votes
0
replies
1.9k
views
News: MAY 10 DEADLINE: Apply to Penn State’s Grad Certificate in Applied Bioinformatics – 100% ONLINE
graduate-certificate
updated 6 days ago by 38k • written 8.0 years ago by ▴ 10
5
votes
2
replies
3.2k
views
News: Summary of AGBT 2015
AGBT2015 AGBT
updated 10 days ago by 38k • written 8.1 years ago by ▴ 640
3
votes
2
replies
2.4k
views
News: Samtools/htslib v1.2 released
htslib samtools bcftools
updated 11 days ago by 38k • written 8.1 years ago by 103k
0
votes
0
replies
1.8k
views
News: Workshop: Analysis of Massively Parallel Sequencing (NGS) Data
NGS Data-Analysis
updated 12 days ago by 38k • written 8.2 years ago by ▴ 270
6
votes
1
reply
1.7k
views
News: Contest: Antibody Marathon Match Problem: ABCSpeedup
contest
updated 12 days ago by 38k • written 8.2 years ago by 153k
11
votes
0
replies
3.1k
views
News: BWA 0.7.11 is out, supports ALT contigs
BWA
updated 13 days ago by 38k • written 8.3 years ago by 103k
0
votes
0
replies
1.6k
views
News: Project Management Tools for Bioinformaticians and Service Providers
Quotation-software LIMS Project-management
updated 13 days ago by 38k • written 8.3 years ago by ▴ 640
0
votes
0
replies
2.3k
views
News: Total RNA Commercial Kit Comparison Study
microarray NGS RNA-Seq qPCR
updated 17 days ago by 38k • written 8.3 years ago by ▴ 40
1
vote
0
replies
2.2k
views
News: APPLICATION DEADLINE IS DECEMBER 5 for Penn State Applied Bioinformatics Program – 100% Online
education courses online
updated 17 days ago by 38k • written 8.4 years ago by ▴ 10
2
votes
1
reply
1.7k
views
News: Structure viewer for Ebola virus proteins
ebola structure
updated 17 days ago by 38k • written 8.4 years ago by ▴ 260
125 results • Page 1 of 3
Recent Votes
Answer: multiallelic variants
Answer: LIMMA calculates identical adj.P.Val for different proteins from proteomics
Comment: Hard clip fastq
Answer: Hard clip fastq
Answer: Hard clip fastq
Answer: Hard clip fastq
Comment: Protein name in GenBank
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Recent Awards • All
Popular Question to sharmatina189059 ▴ 110
Popular Question to ahnje770 ▴ 20
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Recent Replies
Answer: Somatic truth set by samuel ▴ 180
I think I have found an naswer to my own question. Should anyone have the same question as of March 2023 the relevant data and information…
Answer: GetBM - GERP conservation score for GRCm39 by Kyle • 0
Final solution thanks to Ben's help:: # convert df to Grange. snp_gr <-makeGRangesFromDataFrame(BM_SNPs, seqnames.field = "seqnam…
Comment: GetBM - GERP conservation score for GRCm39 by Kyle • 0
Perfect answer, thanks Ben!
Answer: MapSplice2 gives error if the thread count (-p value) is greater than 2 by vishal.koparde ▴ 10
Any updates??
Comment: how to know what adapter sequences to trim for RNA-seq? by lunarskye222 • 0
Do you happen to know if the middle part of this udi barcode (GATCGGAAGAGCACACGTCTGAACTCCAGTCACGTCTACATATCTCG) is also part of the TruSeq a…
Comment: Hard clip fastq by GenoMax 127k
If you simply want the reads to be compatible in length then do not adapter trim.
Comment: Hard clip fastq by samuel ▴ 180
@ATpoint, so no adapter trimming first? Just trim the raw fastq?
Answer: Confused on strandedness, what are antisense transcripts? by dsull ★ 4.0k
RNA pol always transcribes 5' -> 3'. This has nothing to do with +/-. Think of it on the DNA level: If the mRNA made is the same sequenc…
Comment: Protein name in GenBank by GenoMax 127k
If you must do this programmatically then collect all cases where things differ in order of words (or number of words) like the example abo…
Answer: Hard clip fastq by GenoMax 127k
You can also use `reformat.sh` from [**BBMap suite**][1] as follows reformat.sh -Xmx2g in1=R1.fq.gz in2=R2.fq.gz out1=R1_trim.fq.gz …
Answer: Hard clip fastq by ATpoint 70k
Use `seqtk trimfq`. It makes sense to trim first to your desired length and then run identical downstream processing for a fair comparison.…
Comment: Protein name in GenBank by Mensur Dlakic ★ 23k
I think you either take time to do it properly, or you will end up missing some proteins. BLAST sequence search, even on 1500 genomes, can …
Comment: Log2 FC Threshold by ATpoint 70k
Since OP is using GEO2R which uses limma the appropriate function (need to run manually, GEO2R does not support) is `limma::treat()` rather…
Answer: Adding median value to VlnPlot in Seurat by Ming Tommy Tang ★ 2.9k
If you know ggplot2, you can `get_expression_data` function in here https://divingintogeneticsandgenomics.rbind.io/post/how-to-do-gene-corr…
Answer: how to know what adapter sequences to trim for RNA-seq? by Ming Tommy Tang ★ 2.9k
You may use fastp which detect adaptors by itself https://github.com/OpenGene/fastp#adapters
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