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550 results • Page
2 of 11
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News:
CFP Special Collection: Parallel Computing in Evolutionary Bioinformatics, SAGE Journal, JCR 2.203 (Q2)
CFP
updated 2 days ago by
Ram
39k • written 3.9 years ago by
jlguisado
• 0
0
votes
0
replies
1.2k
views
News:
Webinar: Mapping the single-cell atlas of the bone marrow microenvironment
webinar
RNA-Seq
next-gen
single-cell
updated 3 days ago by
Ram
39k • written 3.9 years ago by
Jennifer Pham
▴ 450
3
votes
1
reply
796
views
News:
Do you want to learn how to analyze your genomic data using R and Bioconductor?
Genomics
R
Bioconductor
updated 3 days ago by
Ram
39k • written 3.9 years ago by
carlopecoraro2
★ 2.3k
0
votes
0
replies
536
views
News:
Training in Advanced Transcriptomics (RNASeq) Analysis @ NIH, USA
RNA-Seq
sequencing
updated 3 days ago by
Ram
39k • written 3.9 years ago by
AABI
▴ 130
0
votes
0
replies
683
views
News:
Bioinformatic Analysis of Next Generation Sequencing Data @NIH
RNA-Seq
epigenomics
ChIP-Seq
updated 3 days ago by
Ram
39k • written 3.9 years ago by
AABI
▴ 130
0
votes
0
replies
543
views
News:
Webinar: Gen3 Data Exploration
sequence
data-science
gene
updated 3 days ago by
Ram
39k • written 3.9 years ago by
ppandey
▴ 10
2
votes
0
replies
720
views
News:
Bioinformatic courses in Canada (Quebec City) this September
Unix
Genomics
GWAS
R
Python
updated 3 days ago by
Ram
39k • written 3.9 years ago by
carlopecoraro2
★ 2.3k
0
votes
0
replies
506
views
News:
Interested Phylogenetic comparative methods?
R
SNP
next-gen
updated 3 days ago by
Ram
39k • written 3.9 years ago by
carlopecoraro2
★ 2.3k
0
votes
0
replies
613
views
News:
BIRCH Release 3.50
transcriptomics
linux
osx
genomics
updated 3 days ago by
Ram
39k • written 3.9 years ago by
brian.fristensky
▴ 450
5
votes
2
replies
729
views
News:
The precisionFDA BioCompute Object App-a-thon has been extended to October 18!
BioCompute
challenge
updated 3 days ago by
Ram
39k • written 3.9 years ago by
hollystephens723
▴ 70
2
votes
0
replies
868
views
News:
Metagenomics and Metabarcoding Course @ Edinburgh Genomics
metagenomics
metabarcoding
course
workshop
updated 3 days ago by
Ram
39k • written 3.9 years ago by
Edinburgh Genomics Training
▴ 40
0
votes
0
replies
847
views
News:
RNA-seq Data Analysis Workshop @ Edinburgh Genomics
Linux
R
RNA-Seq
course
updated 3 days ago by
Ram
39k • written 3.9 years ago by
Edinburgh Genomics Training
▴ 40
0
votes
0
replies
740
views
News:
Training in Statistical Analysis using R @NIH,September 4-6,2019
Analysis
Statistical
r-platform
updated 3 days ago by
Ram
39k • written 3.9 years ago by
AABI
▴ 130
0
votes
0
replies
682
views
News:
Do you want to improve your programming skills?
Programming
Unix
Bash
Python
updated 3 days ago by
Ram
39k • written 3.9 years ago by
carlopecoraro2
★ 2.3k
3
votes
0
replies
1.3k
views
News:
Analysis of single cell RNA-seq data - Berlin 23 -27 March 2020
scRNA-seq
RNA-Seq
updated 3 days ago by
Ram
39k • written 3.9 years ago by
carlopecoraro2
★ 2.3k
0
votes
0
replies
765
views
News:
Training in Molecular Modeling and Molecular Dynamics @NIH, August 27-30,2019
dynamics
sequence
RNA-Seq
updated 3 days ago by
Ram
39k • written 3.9 years ago by
AABI
▴ 130
0
votes
0
replies
752
views
News:
Cellosaurus release 31 is available
knowledgebase
cell-line
database
updated 3 days ago by
Ram
39k • written 3.9 years ago by
Amos Bairoch
▴ 110
0
votes
0
replies
692
views
News:
Data Visualization Course in Berlin
R
updated 3 days ago by
Ram
39k • written 3.9 years ago by
carlopecoraro2
★ 2.3k
2
votes
0
replies
776
views
News:
Interested in learning more about GWAS? Course in Canada this September
GWAS
pipeline
updated 3 days ago by
Ram
39k • written 3.9 years ago by
carlopecoraro2
★ 2.3k
0
votes
0
replies
980
views
News:
Introduction to Bioinformatics using Linux (IBUL04)
Linux
RNA-Seq
next-gen
updated 3 days ago by
Ram
39k • written 3.9 years ago by
oliverhooker
▴ 60
0
votes
0
replies
1.0k
views
News:
5 PART-FUNDED SCHOLARSHIPS for the course "The Practice of RADseq: Population Genomics Analysis with Stacks (RDSQ01)"
Genomics
RAD-Seq
Stacks
updated 3 days ago by
Ram
39k • written 3.9 years ago by
oliverhooker
▴ 60
0
votes
0
replies
579
views
News:
Training in Variant Analysis @NIH,August 20-23
genotype
next-gen
biomedical
updated 3 days ago by
Ram
39k • written 3.9 years ago by
AABI
▴ 130
8
votes
0
replies
1.1k
views
News:
Final Call - Hands-On RNA-Seq Data Analysis Workshop - only 2 seats left
data-analysis
RNA-Seq
workshop
updated 3 days ago by
Ram
39k • written 3.9 years ago by
David Langenberger
9.9k
2
votes
0
replies
1.6k
views
News:
Course - Metabolomics - Berlin, 25-29 November 2019
Metabolomics
R
Bioconductor
updated 4 days ago by
Ram
39k • written 3.9 years ago by
carlopecoraro2
★ 2.3k
1
vote
0
replies
654
views
News:
OmicsLogic Genomics Training Program starts July 23
genome
dna
genomics
updated 4 days ago by
Ram
39k • written 3.9 years ago by
elia.brodsky
▴ 340
0
votes
0
replies
702
views
News:
OmicsLogic Genomics Online Program
dna
next-gen
alignment
genomics
updated 4 days ago by
Ram
39k • written 3.9 years ago by
elia.brodsky
▴ 340
3
votes
1
reply
842
views
News:
Course - Genomics with R and Bioconductor - Berlin
R
Bioconductor
updated 4 days ago by
Ram
39k • written 3.9 years ago by
carlopecoraro2
★ 2.3k
2
votes
0
replies
822
views
News:
Course: Approaches and Computational tools for CRISPR Genome editing
Genome-Editing
CRISPR
updated 4 days ago by
Ram
39k • written 3.9 years ago by
carlopecoraro2
★ 2.3k
2
votes
0
replies
609
views
News:
Speciation Genomics course in Canada (September 2019)
R
SNP
next-gen
updated 4 days ago by
Ram
39k • written 3.9 years ago by
carlopecoraro2
★ 2.3k
2
votes
0
replies
1.3k
views
News:
UCSC Genome Browser JSON API
ucsc
json
api
updated 4 days ago by
Ram
39k • written 3.9 years ago by
Pierre Lindenbaum
154k
0
votes
0
replies
759
views
News:
Programming for Biomedical Researchers @NIH, August 13-16,2019
training
researchers
biomedical
updated 4 days ago by
Ram
39k • written 3.9 years ago by
AABI
▴ 130
0
votes
0
replies
1.1k
views
News:
Brand new bioinformatics courses at Edinburgh Genomics
metagenomics
python
RNA-Seq
training
updated 4 days ago by
Ram
39k • written 4.0 years ago by
Edinburgh Genomics Training
▴ 40
1
vote
0
replies
624
views
News:
Course: Speciation Genomics in Canada - Quebec City, 2-6 September 2019
snp
R
next-gen
updated 4 days ago by
Ram
39k • written 4.0 years ago by
info
▴ 40
0
votes
0
replies
849
views
News:
Registration open (BioSB PhD course): Machine Learning for Bioinformatics and Systems Biology, 7-11 October 2019, Amsterdam/Delft, The Netherlands
machine-learning
course
updated 4 days ago by
Ram
39k • written 4.0 years ago by
Perry Moerland
▴ 20
0
votes
0
replies
689
views
News:
Single-molecule long-read sequencing reveals the chromatin basis of gene expression
sequencing
updated 4 days ago by
Ram
39k • written 4.0 years ago by
wanganqi18
• 0
2
votes
0
replies
875
views
News:
Introduction to GWAS Workshop- Canada 9-13 September 2019
GWAS
updated 4 days ago by
Ram
39k • written 4.0 years ago by
carlopecoraro2
★ 2.3k
1
vote
0
replies
883
views
News:
BBSRC (UK funding body) Review of data intensive biology in the UK
questionnaire
UK
updated 4 days ago by
Ram
39k • written 4.0 years ago by
i.sudbery
17k
2
votes
0
replies
881
views
News:
Summer Courses @ Edinburgh Genomics
workshop
training
courses
python
RNA-Seq
updated 4 days ago by
Ram
39k • written 4.0 years ago by
Edinburgh Genomics Training
▴ 40
2
votes
0
replies
666
views
News:
Course: RNA-seq Analyses in non-model organisms (Berlin 11-15 November 2019)
gene
RNA-Seq
next-gen
updated 4 days ago by
Ram
39k • written 4.0 years ago by
carlopecoraro2
★ 2.3k
3
votes
1
reply
687
views
News:
PrecisionFDA has won a FedHealth IT award!!
platform
cloud-based
precision-medicine
award
updated 4 days ago by
Ram
39k • written 4.0 years ago by
stephens_sarah
▴ 150
0
votes
0
replies
892
views
News:
eDNA Metabarcoding course in Berlin - 8-12 July
eDNA
Environmental-DNA
Metabarcoding
updated 4 days ago by
Ram
39k • written 4.0 years ago by
carlopecoraro2
★ 2.3k
0
votes
0
replies
890
views
News:
Data Science with Gen3 - Using Jupyter Notebooks
sequence
genome
Jupyter
Notebooks
updated 4 days ago by
Ram
39k • written 4.0 years ago by
ppandey
▴ 10
0
votes
0
replies
830
views
News:
2019 Galaxy Community Conference: Deadlines this week and next
GCC2019
updated 4 days ago by
Ram
39k • written 4.0 years ago by
Dave Clements
▴ 610
0
votes
0
replies
874
views
News:
Course Introduction to GWAS (Genome Wide Association Studies), Nov 25-29, Barcelona (Spain).
snp
genome
updated 4 days ago by
Ram
39k • written 4.0 years ago by
teresa.rosas
• 0
0
votes
0
replies
521
views
News:
Call for hacking proposals: NBDC/DBCLS BioHackathon 2019
BioHackathon
updated 4 days ago by
Ram
39k • written 4.0 years ago by
Pierre Lindenbaum
154k
0
votes
0
replies
795
views
News:
Training - Phylogenetic comparative methods - Physalia-courses
R
Phylogenetics
updated 4 days ago by
Ram
39k • written 4.0 years ago by
carlopecoraro2
★ 2.3k
0
votes
0
replies
768
views
News:
Cellosaurus release 30 is available
database
cell-line
updated 4 days ago by
Ram
39k • written 4.0 years ago by
Amos Bairoch
▴ 110
0
votes
0
replies
634
views
News:
Course on Landscape Genomics in Berlin
snp
R
next-gen
updated 4 days ago by
Ram
39k • written 4.0 years ago by
carlopecoraro2
★ 2.3k
0
votes
0
replies
974
views
News:
Training - Advanced R programming - Berlin
R
Programming
updated 5 days ago by
Ram
39k • written 4.1 years ago by
carlopecoraro2
★ 2.3k
2
votes
0
replies
738
views
News:
The BioCompute Object App-a-thon is now live!
app-a-thon
pipeline
precisionFDA
updated 5 days ago by
Ram
39k • written 4.1 years ago by
stephens_sarah
▴ 150
550 results • Page
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Answer: How to sort gff3 according to chromosome order?
Answer: how to sort unique seq from fasta files
Answer: Make a BedGraph file
Answer: Finding Enhancers using Genomation library
A: Extracting N positions from fasta file
Comment: Gene enrichment analysis
Comment: Gene enrichment analysis
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Recent Replies
Comment: How to split a scRNA reads BAM or FASTQ file to a separate file for each cell by
by
biofalconch
▴ 580
Hey, if you arelady have the barcodes, you could use samtools `samtools view -h -b -f CB:Z:TAAGAGATCCTATGTT > TAAGAGATCCTATGTT.bam` Hope…
Answer: How to split a scRNA reads BAM or FASTQ file to a separate file for each cell by
by
biofalconch
▴ 580
Here is a code that should work, but just like everyone else in the comments I'm a little confused why would you need to separate them: …
Comment: Make a BedGraph file
by
kirillkirilenko
▴ 10
It works, thank you!
Comment: CNNScoreVariants Error
by
Pierre Lindenbaum
154k
check you have a complete environment for GATK , including the python module "keras". https://gatk.broadinstitute.org/hc/en-us/articles/360…
Comment: How to split a scRNA reads BAM or FASTQ file to a separate file for each cell by
by
Cathal
• 0
Did you have any luck in splitting the BAM file based on the 10x cell barcode? I would like to split a BAM file based to only include 5 spe…
Answer: Getting same value for start and end position, "DNA methylation"
by
ATpoint
72k
genomation is based on GenomicRanges which uses 1-based coordinates. https://www.biostars.org/p/84686/ Since a single CpG has a length o…
Comment: Gene enrichment analysis
by
ATpoint
72k
I cannot speak for this package but I recommend clusterProfiler where the universe argument isindeed all tested genes so your background.
Answer: Finding Enhancers using Genomation library
by
ATpoint
72k
You cannot derive enhancers from methylation profiles. Enhancers are regulatory elements, and they either are methylated or not. There is l…
Answer: convert data frame with character column to data frame with integer column
by
Basti
★ 1.5k
Cross-posted and answered there : https://stackoverflow.com/questions/76388032/convert-data-frame-with-character-column-to-data-frame-with-…
Comment: Getting same value for start and end position, "DNA methylation"
by
Basti
★ 1.5k
Your question lacks precision, we do not know what you are talking about
Comment: Gene enrichment analysis
by
Meisam
▴ 180
If you want to find enrichment of your selected genes versus the superset of all genes detected, then yes you mean the background. And to d…
Comment: WGCNA Trait File Issues
by
LChart
2.6k
The NAs are coming from the fact that each 'Sample' (which I assume is a unique identifier for a sample) is not actually a number and so th…
Answer: Why is coordinate sort required before findng read depths?
by
zhang yi xing
▴ 10
hi ,you can look at this fig in software **mosdepth** . By traversing a sorted BAM file from the beginning, one can obtain depth informat…
Comment: Getting species names and taxa id from assembly accession number
by
Mensur Dlakic
★ 23k
You should probably not advertise your personal email. It is not needed to understand the code. I don't know what exactly is the problem w…
Answer: how to sort unique seq from fasta files
by
shenwei356
8.1k
[seqkit common](https://bioinf.shenwei.me/seqkit/usage/#common) finds common sequences of multiple files by id/name/sequence seqkit co…
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