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News: CFP Special Collection: Parallel Computing in Evolutionary Bioinformatics, SAGE Journal, JCR 2.203 (Q2)
CFP
updated 2 days ago by 39k • written 3.9 years ago by • 0
0
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0
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1.2k
views
News: Webinar: Mapping the single-cell atlas of the bone marrow microenvironment
webinar RNA-Seq next-gen single-cell
updated 3 days ago by 39k • written 3.9 years ago by ▴ 450
3
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1
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796
views
News: Do you want to learn how to analyze your genomic data using R and Bioconductor?
Genomics R Bioconductor
updated 3 days ago by 39k • written 3.9 years ago by ★ 2.3k
0
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0
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536
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News: Training in Advanced Transcriptomics (RNASeq) Analysis @ NIH, USA
RNA-Seq sequencing
updated 3 days ago by 39k • written 3.9 years ago by ▴ 130
0
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0
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683
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News: Bioinformatic Analysis of Next Generation Sequencing Data @NIH
RNA-Seq epigenomics ChIP-Seq
updated 3 days ago by 39k • written 3.9 years ago by ▴ 130
0
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0
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543
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News: Webinar: Gen3 Data Exploration
sequence data-science gene
updated 3 days ago by 39k • written 3.9 years ago by ▴ 10
2
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0
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720
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News: Bioinformatic courses in Canada (Quebec City) this September
Unix Genomics GWAS R Python
updated 3 days ago by 39k • written 3.9 years ago by ★ 2.3k
0
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0
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506
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News: Interested Phylogenetic comparative methods?
R SNP next-gen
updated 3 days ago by 39k • written 3.9 years ago by ★ 2.3k
0
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0
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613
views
News: BIRCH Release 3.50
transcriptomics linux osx genomics
updated 3 days ago by 39k • written 3.9 years ago by ▴ 450
5
votes
2
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729
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News: The precisionFDA BioCompute Object App-a-thon has been extended to October 18!
BioCompute challenge
updated 3 days ago by 39k • written 3.9 years ago by ▴ 70
2
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0
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868
views
News: Metagenomics and Metabarcoding Course @ Edinburgh Genomics
metagenomics metabarcoding course workshop
updated 3 days ago by 39k • written 3.9 years ago by ▴ 40
0
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0
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847
views
News: RNA-seq Data Analysis Workshop @ Edinburgh Genomics
Linux R RNA-Seq course
updated 3 days ago by 39k • written 3.9 years ago by ▴ 40
0
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0
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740
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News: Training in Statistical Analysis using R @NIH,September 4-6,2019
Analysis Statistical r-platform
updated 3 days ago by 39k • written 3.9 years ago by ▴ 130
0
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0
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682
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News: Do you want to improve your programming skills?
Programming Unix Bash Python
updated 3 days ago by 39k • written 3.9 years ago by ★ 2.3k
3
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0
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1.3k
views
News: Analysis of single cell RNA-seq data - Berlin 23 -27 March 2020
scRNA-seq RNA-Seq
updated 3 days ago by 39k • written 3.9 years ago by ★ 2.3k
0
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0
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765
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News: Training in Molecular Modeling and Molecular Dynamics @NIH, August 27-30,2019
dynamics sequence RNA-Seq
updated 3 days ago by 39k • written 3.9 years ago by ▴ 130
0
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0
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752
views
News: Cellosaurus release 31 is available
knowledgebase cell-line database
updated 3 days ago by 39k • written 3.9 years ago by ▴ 110
0
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0
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692
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News: Data Visualization Course in Berlin
R
updated 3 days ago by 39k • written 3.9 years ago by ★ 2.3k
2
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0
replies
776
views
News: Interested in learning more about GWAS? Course in Canada this September
GWAS pipeline
updated 3 days ago by 39k • written 3.9 years ago by ★ 2.3k
0
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0
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980
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News: Introduction to Bioinformatics using Linux (IBUL04)
Linux RNA-Seq next-gen
updated 3 days ago by 39k • written 3.9 years ago by ▴ 60
0
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0
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1.0k
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News: 5 PART-FUNDED SCHOLARSHIPS for the course "The Practice of RADseq: Population Genomics Analysis with Stacks (RDSQ01)"
Genomics RAD-Seq Stacks
updated 3 days ago by 39k • written 3.9 years ago by ▴ 60
0
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0
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579
views
News: Training in Variant Analysis @NIH,August 20-23
genotype next-gen biomedical
updated 3 days ago by 39k • written 3.9 years ago by ▴ 130
8
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0
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1.1k
views
News: Final Call - Hands-On RNA-Seq Data Analysis Workshop - only 2 seats left
data-analysis RNA-Seq workshop
updated 3 days ago by 39k • written 3.9 years ago by 9.9k
2
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0
replies
1.6k
views
News: Course - Metabolomics - Berlin, 25-29 November 2019
Metabolomics R Bioconductor
updated 4 days ago by 39k • written 3.9 years ago by ★ 2.3k
1
vote
0
replies
654
views
News: OmicsLogic Genomics Training Program starts July 23
genome dna genomics
updated 4 days ago by 39k • written 3.9 years ago by ▴ 340
0
votes
0
replies
702
views
News: OmicsLogic Genomics Online Program
dna next-gen alignment genomics
updated 4 days ago by 39k • written 3.9 years ago by ▴ 340
3
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1
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842
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News: Course - Genomics with R and Bioconductor - Berlin
R Bioconductor
updated 4 days ago by 39k • written 3.9 years ago by ★ 2.3k
2
votes
0
replies
822
views
News: Course: Approaches and Computational tools for CRISPR Genome editing
Genome-Editing CRISPR
updated 4 days ago by 39k • written 3.9 years ago by ★ 2.3k
2
votes
0
replies
609
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News: Speciation Genomics course in Canada (September 2019)
R SNP next-gen
updated 4 days ago by 39k • written 3.9 years ago by ★ 2.3k
2
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0
replies
1.3k
views
News: UCSC Genome Browser JSON API
ucsc json api
updated 4 days ago by 39k • written 3.9 years ago by 154k
0
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0
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759
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News: Programming for Biomedical Researchers @NIH, August 13-16,2019
training researchers biomedical
updated 4 days ago by 39k • written 3.9 years ago by ▴ 130
0
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0
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1.1k
views
News: Brand new bioinformatics courses at Edinburgh Genomics
metagenomics python RNA-Seq training
updated 4 days ago by 39k • written 4.0 years ago by ▴ 40
1
vote
0
replies
624
views
News: Course: Speciation Genomics in Canada - Quebec City, 2-6 September 2019
snp R next-gen
updated 4 days ago by 39k • written 4.0 years ago by ▴ 40
0
votes
0
replies
849
views
News: Registration open (BioSB PhD course): Machine Learning for Bioinformatics and Systems Biology, 7-11 October 2019, Amsterdam/Delft, The Netherlands
machine-learning course
updated 4 days ago by 39k • written 4.0 years ago by ▴ 20
0
votes
0
replies
689
views
News: Single-molecule long-read sequencing reveals the chromatin basis of gene expression
sequencing
updated 4 days ago by 39k • written 4.0 years ago by • 0
2
votes
0
replies
875
views
News: Introduction to GWAS Workshop- Canada 9-13 September 2019
GWAS
updated 4 days ago by 39k • written 4.0 years ago by ★ 2.3k
1
vote
0
replies
883
views
News: BBSRC (UK funding body) Review of data intensive biology in the UK
questionnaire UK
updated 4 days ago by 39k • written 4.0 years ago by 17k
2
votes
0
replies
881
views
News: Summer Courses @ Edinburgh Genomics
workshop training courses python RNA-Seq
updated 4 days ago by 39k • written 4.0 years ago by ▴ 40
2
votes
0
replies
666
views
News: Course: RNA-seq Analyses in non-model organisms (Berlin 11-15 November 2019)
gene RNA-Seq next-gen
updated 4 days ago by 39k • written 4.0 years ago by ★ 2.3k
3
votes
1
reply
687
views
News: PrecisionFDA has won a FedHealth IT award!!
platform cloud-based precision-medicine award
updated 4 days ago by 39k • written 4.0 years ago by ▴ 150
0
votes
0
replies
892
views
News: eDNA Metabarcoding course in Berlin - 8-12 July
eDNA Environmental-DNA Metabarcoding
updated 4 days ago by 39k • written 4.0 years ago by ★ 2.3k
0
votes
0
replies
890
views
News: Data Science with Gen3 - Using Jupyter Notebooks
sequence genome Jupyter Notebooks
updated 4 days ago by 39k • written 4.0 years ago by ▴ 10
0
votes
0
replies
830
views
News: 2019 Galaxy Community Conference: Deadlines this week and next
GCC2019
updated 4 days ago by 39k • written 4.0 years ago by ▴ 610
0
votes
0
replies
874
views
News: Course Introduction to GWAS (Genome Wide Association Studies), Nov 25-29, Barcelona (Spain).
snp genome
updated 4 days ago by 39k • written 4.0 years ago by • 0
0
votes
0
replies
521
views
News: Call for hacking proposals: NBDC/DBCLS BioHackathon 2019
BioHackathon
updated 4 days ago by 39k • written 4.0 years ago by 154k
0
votes
0
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795
views
News: Training - Phylogenetic comparative methods - Physalia-courses
R Phylogenetics
updated 4 days ago by 39k • written 4.0 years ago by ★ 2.3k
0
votes
0
replies
768
views
News: Cellosaurus release 30 is available
database cell-line
updated 4 days ago by 39k • written 4.0 years ago by ▴ 110
0
votes
0
replies
634
views
News: Course on Landscape Genomics in Berlin
snp R next-gen
updated 4 days ago by 39k • written 4.0 years ago by ★ 2.3k
0
votes
0
replies
974
views
News: Training - Advanced R programming - Berlin
R Programming
updated 5 days ago by 39k • written 4.1 years ago by ★ 2.3k
2
votes
0
replies
738
views
News: The BioCompute Object App-a-thon is now live!
app-a-thon pipeline precisionFDA
updated 5 days ago by 39k • written 4.1 years ago by ▴ 150
550 results • Page 2 of 11
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Answer: How to sort gff3 according to chromosome order?
Answer: how to sort unique seq from fasta files
Answer: Make a BedGraph file
Answer: Finding Enhancers using Genomation library
A: Extracting N positions from fasta file
Comment: Gene enrichment analysis
Comment: Gene enrichment analysis
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Popular Question to english.server ▴ 290
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Recent Replies
Comment: How to split a scRNA reads BAM or FASTQ file to a separate file for each cell by by biofalconch ▴ 580
Hey, if you arelady have the barcodes, you could use samtools `samtools view -h -b -f CB:Z:TAAGAGATCCTATGTT > TAAGAGATCCTATGTT.bam` Hope…
Answer: How to split a scRNA reads BAM or FASTQ file to a separate file for each cell by by biofalconch ▴ 580
Here is a code that should work, but just like everyone else in the comments I'm a little confused why would you need to separate them: …
Comment: Make a BedGraph file by kirillkirilenko ▴ 10
It works, thank you!
Comment: CNNScoreVariants Error by Pierre Lindenbaum 154k
check you have a complete environment for GATK , including the python module "keras". https://gatk.broadinstitute.org/hc/en-us/articles/360…
Comment: How to split a scRNA reads BAM or FASTQ file to a separate file for each cell by by Cathal • 0
Did you have any luck in splitting the BAM file based on the 10x cell barcode? I would like to split a BAM file based to only include 5 spe…
Answer: Getting same value for start and end position, "DNA methylation" by ATpoint 72k
genomation is based on GenomicRanges which uses 1-based coordinates. https://www.biostars.org/p/84686/ Since a single CpG has a length o…
Comment: Gene enrichment analysis by ATpoint 72k
I cannot speak for this package but I recommend clusterProfiler where the universe argument isindeed all tested genes so your background.
Answer: Finding Enhancers using Genomation library by ATpoint 72k
You cannot derive enhancers from methylation profiles. Enhancers are regulatory elements, and they either are methylated or not. There is l…
Answer: convert data frame with character column to data frame with integer column by Basti ★ 1.5k
Cross-posted and answered there : https://stackoverflow.com/questions/76388032/convert-data-frame-with-character-column-to-data-frame-with-…
Comment: Getting same value for start and end position, "DNA methylation" by Basti ★ 1.5k
Your question lacks precision, we do not know what you are talking about
Comment: Gene enrichment analysis by Meisam ▴ 180
If you want to find enrichment of your selected genes versus the superset of all genes detected, then yes you mean the background. And to d…
Comment: WGCNA Trait File Issues by LChart 2.6k
The NAs are coming from the fact that each 'Sample' (which I assume is a unique identifier for a sample) is not actually a number and so th…
Answer: Why is coordinate sort required before findng read depths? by zhang yi xing ▴ 10
hi ,you can look at this fig in software **mosdepth** . By traversing a sorted BAM file from the beginning, one can obtain depth informat…
Comment: Getting species names and taxa id from assembly accession number by Mensur Dlakic ★ 23k
You should probably not advertise your personal email. It is not needed to understand the code. I don't know what exactly is the problem w…
Answer: how to sort unique seq from fasta files by shenwei356 8.1k
[seqkit common](https://bioinf.shenwei.me/seqkit/usage/#common) finds common sequences of multiple files by id/name/sequence seqkit co…
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