15 hours ago by
carlopecoraro2
★
2.2k
0
votes
0
replies
118
views
2
votes
0
replies
97
views
1 day ago by
carlopecoraro2
★
2.2k
0
votes
0
replies
76
views
3 days ago by
carlopecoraro2
★
2.2k
0
votes
2
replies
496
views
0
votes
0
replies
144
views
2 days ago by
carlopecoraro2
★
2.2k
0
votes
0
replies
72
views
5 days ago by
PeterC_NCBI
▴
180
1
vote
2
replies
229
views
5 days ago by
carlopecoraro2
★
2.2k
0
votes
0
replies
137
views
9 days ago by
mia.nahom
•
0
0
votes
0
replies
147
views
12 days ago by
carlopecoraro2
★
2.2k
1
vote
0
replies
215
views
13 days ago by
carlopecoraro2
★
2.2k
0
votes
0
replies
221
views
14 days ago by
carlopecoraro2
★
2.2k
0
votes
0
replies
129
views
15 days ago by
PeterC_NCBI
▴
180
0
votes
0
replies
189
views
15 days ago by
carlopecoraro2
★
2.2k
0
votes
0
replies
182
views
0
votes
0
replies
164
views
18 days ago by
David Langenberger
9.8k
1
vote
5
replies
538
views
updated 18 days ago by
Dunois
★
2.2k
•
written 21 days ago by
carlopecoraro2
★
2.2k
0
votes
0
replies
163
views
20 days ago by
carlopecoraro2
★
2.2k
0
votes
1
reply
336
views
updated 21 days ago by
nanodano
▴
10
•
written 21 days ago by
carlopecoraro2
★
2.2k
1
vote
2
replies
385
views
19 days ago by
Samuel Lampa
★
1.3k
0
votes
0
replies
195
views
22 days ago by
carlopecoraro2
★
2.2k
0
votes
3
replies
399
views
23 days ago by
PeterC_NCBI
▴
180
1
vote
6
replies
539
views
updated 15 days ago by
synat.keam
▴
70
•
written 6 weeks ago by
carlopecoraro2
★
2.2k
1
vote
1
reply
1.2k
views
22
votes
9
replies
5.9k
views
updated 25 days ago by
Ram
37k
•
written 7.6 years ago by
David Langenberger
9.8k
3
votes
0
replies
2.8k
views
updated 22 days ago by
Ram
37k
•
written 7.7 years ago by
Bert Overduin
★
3.7k
1
vote
1
reply
2.3k
views
10
votes
7
replies
1.9k
views
9
votes
6
replies
1.8k
views
Recent Votes
Recent Locations •
All
Memphis, TN, 1 minute ago
Yankton, 4 minutes ago
China, 7 minutes ago
Singapore, 11 minutes ago
China, 21 minutes ago
United States, 22 minutes ago
Tehran, 23 minutes ago
Recent Awards •
All
Popular Question to
tianshenbio
▴
160
Popular Question to
maxdlf12
•
0
Teacher to
Pierre Lindenbaum
152k
Popular Question to
LDT
▴
220
Popular Question to
Michael Dondrup
52k
Popular Question to
caochch
•
0
Popular Question to
timothy.kirkwood
▴
130
Recent Replies
Answer: trainGlimmerHMM Error while training a genome
by
congliu37
•
0
Hello,
I got the same error using ~20,000 genes for training and it was solved by reducing training gene set. I assume GlimmerHMM was no…
Comment: How to Calulate Allele Frequency from a VCF File?
by
Jeremy Leipzig
21k
That's correct. You don't have biallelic alleles in mitochondria, so you can use either the Allele depth (AD) or depth of coverage (DP) for…
Comment: How to calculate tumor mutation burden (TMB)?
by
Fabio Marroni
★
2.9k
I just published a [post][1] on my blog, in which I include a simple R function for computing TMB. Try to see if that helps. I followed the…
Comment: Gene Set Enrichment Analysis, pathway, metabolism
by
Rob
▴
160
Thank you FrankStarling, ATpoint, jv, these were so helpful.
Comment: translate CDS to prot formatted with nt nubers
by
Pierre Lindenbaum
152k
> with nucleotide numbers and DNA/prot aligned line by line
what does it mean ? Create a Minimal, Reproducible Example to enable others t…
Comment: How to translate CDS to an amino acid sequence
by
vvasta
•
0
I tried several of the online DNA translation tools but have not found one that would output DNA/prot alignment with nucleotide number
w…
Comment: How possible deadlocks are there while migrating from MYISAM to InnoDb?
by
Pierre Lindenbaum
152k
but you already knew it. https://www.biostars.org/p/9551097/#9551098
Comment: How possible deadlocks are there while migrating from MYISAM to InnoDb?
by
Pierre Lindenbaum
152k
your question is not related to bioinformatics. Ask stackoverflow.com.
Comment: Statistical test for checking cis regulation?
by
Fabio Marroni
★
2.9k
Hi lumos. It is not very clear to me what kind of information are you using for the test and how are you measuring cis-regulation. Are you …
Comment: Error 134 while aligning using hisat2
by
Fabio Marroni
★
2.9k
Other instances of the same error were indeed related to disk [space][1]. Can you post the output of the command: `df -h /bams/`? Another p…
Comment: **Error: unable to open file or unable to determine types for file**
by
Pierre Lindenbaum
152k
```
Please ensure that your file is TAB delimited (e.g., cat -t FILE).
- Also ensure that your file has integer chromosome coordinates in t…
Comment: bgzip error 4
by
Pierre Lindenbaum
152k
I/O error. Where are you writing , which filesytem ? do you have enough space ? what is the output of
gzip < chr1.vcf.gz > chr1.vcf.gz…
Comment: Error: unable to open file or unable to determine types for file bed file
by
Neel
▴
10
**Error: unable to open file or unable to determine types for file**
Hi i am trying to run this commands **bedtools intersect -a Ec_k1…
Answer: Anti-miRNA oligonuclotide identification
by
Asan Emirsale
•
0
You should find complementary sequences to make the miRNA silent. Should it be the Biopython or another tool. The solution might be as simp…
Comment: counting reads in a fastq file using a refrence fasta file
by
vaslanzadeh
▴
10
Thanks, this works but it is extremely slow, is there any other alternatives?
Traffic: 779 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6