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28 results • Page
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News:
Course - Machine Learning in R (for omics data)
Genomics
omics
MachineLearning
R
15 hours ago by
carlopecoraro2
★ 2.2k
2
votes
0
replies
97
views
News:
Course - Reproducibility in Bioinformatics
Bioinformatics
Reproducibility
1 day ago by
carlopecoraro2
★ 2.2k
0
votes
0
replies
76
views
News:
course - Multivariate data analysis with R and vegan
Statistics
MultivariateAnalysis
R
vegan
3 days ago by
carlopecoraro2
★ 2.2k
0
votes
2
replies
496
views
News:
Online Course - A Practical Introduction to NGS Data Analysis (February 01-03, 2023)
NGS
DNAseq
variant-calling
RNAseq
4 days ago by
David Langenberger
9.8k
0
votes
0
replies
144
views
News:
Bioinformatics courses in February
Genomics
BioinformaticsTraining
2 days ago by
carlopecoraro2
★ 2.2k
0
votes
0
replies
72
views
News:
Reminder: NCBI Aspera access, update Aspera Connect by Feb 1, 2023
Aspera
NCBI
SRA
GenBank
5 days ago by
PeterC_NCBI
▴ 180
1
vote
2
replies
229
views
News:
Course: Network Analysis in R
NetworkAnalyis
R
5 days ago by
carlopecoraro2
★ 2.2k
0
votes
0
replies
137
views
News:
de novo RNA-seq Analysis Workshop
virtual
workshop
rna
transcriptome
9 days ago by
mia.nahom
• 0
0
votes
0
replies
147
views
News:
Genomic Prediction course
Bioinformatics
SelectiveBreeding
GenomicPrediction
12 days ago by
carlopecoraro2
★ 2.2k
1
vote
0
replies
215
views
News:
course: Meta-analysis in R
Statistics
MetaAnalysis
R
13 days ago by
carlopecoraro2
★ 2.2k
0
votes
0
replies
221
views
News:
GSEA in R/Bioconductor course
Bioconductor
R
GSEA
GeneSetEnrichmentAnalysis
14 days ago by
carlopecoraro2
★ 2.2k
0
votes
0
replies
129
views
News:
For NCBI Aspera access, update Aspera Connect by Feb 1, 2023
Aspera
NCBI
GenBank
15 days ago by
PeterC_NCBI
▴ 180
0
votes
0
replies
189
views
News:
Metabarcoding in Microbial Ecology
Metabarcoding
Qiime2
16S
MicrobialEcology
R
15 days ago by
carlopecoraro2
★ 2.2k
0
votes
0
replies
182
views
News:
Metagenomics tools recommeder system
NGS
Metagenomics
Recommender-system
updated 15 days ago by
Ram
37k • written 15 days ago by
KATA
• 0
0
votes
0
replies
164
views
News:
Hands-On NGS Data Analysis Workshops 2023
NGS
Workshop
RNA-Seq
DNA-Seq
18 days ago by
David Langenberger
9.8k
1
vote
5
replies
538
views
News:
Cancer Genomics course - 2 seats left
CancerGenomics
Genomics
R
Bioinformatics
updated 18 days ago by
Dunois
★ 2.2k • written 21 days ago by
carlopecoraro2
★ 2.2k
0
votes
0
replies
163
views
News:
Course on Generalised Additive Models In R
Statistics
GAMs
R
20 days ago by
carlopecoraro2
★ 2.2k
0
votes
1
reply
336
views
News:
Sex Chromosome Evolution course
Bioinformatics
Genomics
SexChromosomeEvolution
updated 21 days ago by
nanodano
▴ 10 • written 21 days ago by
carlopecoraro2
★ 2.2k
1
vote
2
replies
385
views
News:
New chat server (Discord) for bioinformatics
community
19 days ago by
Samuel Lampa
★ 1.3k
0
votes
0
replies
195
views
News:
Online course - Genome Assembly and Annotation
Longreads
Bioinformatics
GenomeAnnotation
Biodiversity
GenomeAssembly
22 days ago by
carlopecoraro2
★ 2.2k
0
votes
3
replies
399
views
News:
NCBI BLAST ClusteredNR database now available for blastx and PSI-BLAST searches
PSI-BLAST
blastx
BLAST
NCBI
ClusteredNR
23 days ago by
PeterC_NCBI
▴ 180
1
vote
6
replies
539
views
News:
Course - FLOW CYTOMETRY ANALYSIS WITH R/BIOCONDUCTOR
Bioconductor
FlowCytometry
R
updated 15 days ago by
synat.keam
▴ 70 • written 6 weeks ago by
carlopecoraro2
★ 2.2k
1
vote
1
reply
1.2k
views
News:
Genomic Medicine Meeting VIII: NHGRI's Genomic Medicine Portfolio; livestream June 8-9
precision-medicine
updated 25 days ago by
Ram
37k • written 7.6 years ago by
Mary
11k
22
votes
9
replies
5.9k
views
News:
Epigenetics Workshop - DNA Methylation Data Analysis
bisulfite-sequencing
workshop
epigenetics
updated 25 days ago by
Ram
37k • written 7.6 years ago by
David Langenberger
9.8k
3
votes
0
replies
2.8k
views
News:
Introduction to Python for Biologists and Advanced Python for Biologists courses
Python
updated 22 days ago by
Ram
37k • written 7.7 years ago by
Bert Overduin
★ 3.7k
1
vote
1
reply
2.3k
views
News:
Benefits of DNA Testing - Xcode Life sciences provides preventive healthcare solution
personal-genomics
genetic-testing
updated 19 days ago by
Ram
37k • written 7.7 years ago by
sabitha
• 0
10
votes
7
replies
1.9k
views
News:
Free draft copy of book on bioinformatics tools
alignment
Assembly
RNA-seq
next-gen
updated 9 days ago by
Ram
37k • written 7.7 years ago by
ugly.betty77
★ 1.1k
9
votes
6
replies
1.8k
views
News:
No more hidden solutions in bioinformatics
precision-medicine
genome-sequencing
updated 9 days ago by
Ram
37k • written 7.7 years ago by
HG
★ 1.2k
28 results • Page
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Recent Votes
A: from .BAM to .BAI using samtools
Comment: bgzip error 4
Answer: Gene Set Enrichment Analysis, pathway, metabolism
Answer: Gene Set Enrichment Analysis, pathway, metabolism
Answer: Gene Set Enrichment Analysis, pathway, metabolism
Answer: Gene Set Enrichment Analysis, pathway, metabolism
Answer: Gene Set Enrichment Analysis, pathway, metabolism
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Recent Awards •
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Popular Question
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tianshenbio
▴ 160
Popular Question
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maxdlf12
• 0
Teacher
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Pierre Lindenbaum
152k
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LDT
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Recent Replies
Answer: trainGlimmerHMM Error while training a genome
by
congliu37
• 0
Hello, I got the same error using ~20,000 genes for training and it was solved by reducing training gene set. I assume GlimmerHMM was no…
Comment: How to Calulate Allele Frequency from a VCF File?
by
Jeremy Leipzig
21k
That's correct. You don't have biallelic alleles in mitochondria, so you can use either the Allele depth (AD) or depth of coverage (DP) for…
Comment: How to calculate tumor mutation burden (TMB)?
by
Fabio Marroni
★ 2.9k
I just published a [post][1] on my blog, in which I include a simple R function for computing TMB. Try to see if that helps. I followed the…
Comment: Gene Set Enrichment Analysis, pathway, metabolism
by
Rob
▴ 160
Thank you FrankStarling, ATpoint, jv, these were so helpful.
Comment: translate CDS to prot formatted with nt nubers
by
Pierre Lindenbaum
152k
> with nucleotide numbers and DNA/prot aligned line by line what does it mean ? Create a Minimal, Reproducible Example to enable others t…
Comment: How to translate CDS to an amino acid sequence
by
vvasta
• 0
I tried several of the online DNA translation tools but have not found one that would output DNA/prot alignment with nucleotide number w…
Comment: How possible deadlocks are there while migrating from MYISAM to InnoDb?
by
Pierre Lindenbaum
152k
but you already knew it. https://www.biostars.org/p/9551097/#9551098
Comment: How possible deadlocks are there while migrating from MYISAM to InnoDb?
by
Pierre Lindenbaum
152k
your question is not related to bioinformatics. Ask stackoverflow.com.
Comment: Statistical test for checking cis regulation?
by
Fabio Marroni
★ 2.9k
Hi lumos. It is not very clear to me what kind of information are you using for the test and how are you measuring cis-regulation. Are you …
Comment: Error 134 while aligning using hisat2
by
Fabio Marroni
★ 2.9k
Other instances of the same error were indeed related to disk [space][1]. Can you post the output of the command: `df -h /bams/`? Another p…
Comment: **Error: unable to open file or unable to determine types for file**
by
Pierre Lindenbaum
152k
``` Please ensure that your file is TAB delimited (e.g., cat -t FILE). - Also ensure that your file has integer chromosome coordinates in t…
Comment: bgzip error 4
by
Pierre Lindenbaum
152k
I/O error. Where are you writing , which filesytem ? do you have enough space ? what is the output of gzip < chr1.vcf.gz > chr1.vcf.gz…
Comment: Error: unable to open file or unable to determine types for file bed file
by
Neel
▴ 10
**Error: unable to open file or unable to determine types for file** Hi i am trying to run this commands **bedtools intersect -a Ec_k1…
Answer: Anti-miRNA oligonuclotide identification
by
Asan Emirsale
• 0
You should find complementary sequences to make the miRNA silent. Should it be the Biopython or another tool. The solution might be as simp…
Comment: counting reads in a fastq file using a refrence fasta file
by
vaslanzadeh
▴ 10
Thanks, this works but it is extremely slow, is there any other alternatives?
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