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26 results • Page
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109
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News:
New NCBI Datasets APIs to Replace Old Ones
NCBI
API
Datasets
4 days ago by
PeterC_NCBI
▴ 330
0
votes
1
reply
240
views
News:
LAST CALL: Online Course - A Practical Introduction to NGS Data Analysis - October 23-25, 2023
DNA-seq
Workshop
RNA-seq
4 days ago by
David Langenberger
10k
0
votes
0
replies
113
views
News:
RADseq data analysis course
RADseq
Phylogenomics
Bioinformatics
Populationgenomics
Stacks
6 days ago by
carlopecoraro2
★ 2.4k
0
votes
1
reply
189
views
News:
EMBL-EBI virtual course | Introduction to RNA-seq and functional interpretation
RNA-seq
updated 7 days ago by
Ram
40k • written 7 days ago by
Rebecca
• 0
1
vote
0
replies
169
views
News:
Online Training - Bioinformatics Pipeline Development with Nextflow (November 15-17, 2023)
nextflow
automation
pipeline
development
8 days ago by
David Langenberger
10k
2
votes
1
reply
222
views
News:
Successful NCBI NIAID Codeathon on VCF Files in SARS-CoV-2 Genomics
NCBI
Codeathon
updated 5 days ago by
chrchang523
10k • written 8 days ago by
PeterC_NCBI
▴ 330
0
votes
0
replies
167
views
News:
Workshop - Single-Cell RNA-Seq Data Analysis: A Practical Introduction (November 8-10, 2023 in Berlin)
workshop
scRNA-Seq
RNA-Seq
single-cell
updated 8 days ago by
Ram
40k • written 9 days ago by
David Langenberger
10k
0
votes
0
replies
157
views
News:
Research Breakthrough in Identifying Viral Escape Mutations for Improved Therapeutic Design
sequence-analysis
sars-cov-2
spike-protein
updated 8 days ago by
Ram
40k • written 9 days ago by
Prem
• 0
0
votes
0
replies
141
views
News:
Course: Data Manipulation and Visualisation with Python
Python
Data-Visualization
Data-Manipulation
updated 10 days ago by
Ram
40k • written 10 days ago by
carlopecoraro2
★ 2.4k
0
votes
2
replies
579
views
News:
The Practice of RADseq: Population Genomics Analysis with Stacks (RADS02) Early bird deadline approaching - 20th September
population-genomics
radseq
stacks
updated 10 days ago by
Dave Carlson
★ 1.4k • written 11 days ago by
oliverhooker
▴ 110
0
votes
0
replies
141
views
News:
Course - GLMMs in R
GLMM
Mixed-Models
updated 11 days ago by
Ram
40k • written 11 days ago by
carlopecoraro2
★ 2.4k
0
votes
0
replies
143
views
News:
Introduction to Nextflow (2 seats left)
Nextflow
Workflow
Reproducibility
updated 11 days ago by
Ram
40k • written 11 days ago by
carlopecoraro2
★ 2.4k
0
votes
0
replies
145
views
News:
Genomic Prediction course
Bioinformatics
GWAS
GenomicPrediction
12 days ago by
carlopecoraro2
★ 2.4k
0
votes
0
replies
126
views
News:
course - Population Genomics Using Ancient DNA Data
Bioinformatics
PopulationGenomics
Genomics
aDNA
12 days ago by
carlopecoraro2
★ 2.4k
3
votes
5
replies
865
views
News:
Ensembl Release 104 and newer GTF files no longer have genes sorted by position
Ensembl
GTF
updated 17 days ago by
alejandrogzi
▴ 30 • written 10 months ago by
dlaehnemann
▴ 30
0
votes
0
replies
138
views
News:
NCBI ClinVar XML update to accomodate somatic variants
SNP
NCBI
XML
ClinVar
17 days ago by
PeterC_NCBI
▴ 330
0
votes
0
replies
114
views
News:
Workshop on Virtual Screening on Drug Discovery from scratch (15-16 September, 2023 : 07.00 - 09.00 PM IST)
bioinformatics
screening
virtual
updated 17 days ago by
GenoMax
134k • written 18 days ago by
sriv.reetesh
• 0
0
votes
0
replies
122
views
News:
RNAseq data analysis with R/Bioconductor
R
RNAseq
Bioconductor
18 days ago by
carlopecoraro2
★ 2.4k
0
votes
0
replies
147
views
News:
Course - RNAseq in non-model organisms
R
RNAseq
DifferentialExpressionAnalysis
Bioconductor
20 days ago by
carlopecoraro2
★ 2.4k
4
votes
2
replies
263
views
News:
Standalone NCBI ClusteredNR database now available for download
ClusteredNR
NCBI
standalone
BLAST
24 days ago by
PeterC_NCBI
▴ 330
0
votes
0
replies
134
views
News:
Virtual Variant Detection Workshop: September 11-14, 2023
tutorial
detection
genomics
workshop
variant
24 days ago by
mia.nahom
▴ 10
0
votes
0
replies
146
views
News:
Introduction to Deep Learning for Biologists course
Python
Deep-Learning
Machine-Learning
updated 24 days ago by
Ram
40k • written 25 days ago by
carlopecoraro2
★ 2.4k
0
votes
0
replies
131
views
News:
Course - Reproducibility Data Analysis with R
R
renv
VersionControl
Reproducibility
25 days ago by
carlopecoraro2
★ 2.4k
0
votes
0
replies
206
views
News:
Online course: Easily analyze single cell RNA-seq data with Cellenics®, a user-friendly web-based platform
scRNA-seq
training
single-cell-RNA-seq
updated 28 days ago by
Ram
40k • written 29 days ago by
Sara
• 0
0
votes
0
replies
260
views
News:
Join Our Online Course: Incorporating Paleogenomes into Evolutionary Genomics Studies
Paleogenomics
Genomics
aDNA
Adaptation-Genomics
updated 29 days ago by
Ram
40k • written 29 days ago by
carlopecoraro2
★ 2.4k
0
votes
0
replies
136
views
News:
Course on Phylogenomics
Phylogenetic-Inference
Divergence-Time-Estimation
Genomics
Phylogenomics
updated 29 days ago by
Ram
40k • written 4 weeks ago by
carlopecoraro2
★ 2.4k
26 results • Page
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Comment: ncbi error report log for validate fastq issue
Comment: ncbi error report log for validate fastq issue
A: Bowtie2 MAPQ difference using local vs end-to-end alignment
C: Bowtie2 MAPQ difference using local vs end-to-end alignment
Answer: TPM RNA-seq data for differential expression analysis
A: Error When Installing Emboss
Answer: Subclustering of intergated cells from scRNA-seq data
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Comment: Unable to install HorvathMammalMethylChip40manifest packages
by
ATpoint
77k
There is no package of that name in CRAN or Bioconductor. Where do you have it from, so which tutorial you follow?
Comment: Subclustering of intergated cells from scRNA-seq data
by
fifty_fifty
▴ 60
thank you. This is exactly what I was looking for
Answer: Search RCSB with a list of protein names?
by
Mensur Dlakic
★ 25k
This is not the most elegant solution, but it should work with previous suggestions. In this remote directory: http://ftp.wwpdb.org/p…
Answer: Automate the Splitting of a VCF File by Sample (bcftools)
by
Ram
40k
The manual says you can split samples out at once using the `+split` plugin. So, `bcftools +split -Oz -o <PATH> file.vcf.gz` should do the …
Comment: differences between trajectories in conditions with Monocle3 or other tools
by
Amitm
★ 2.2k
Phate (or Monocle) doesn't do UMAP. If you have done UMAP already (using seurat) then you could use the cell barcode to UMAP cluster label …
Comment: Error: cannot open file 2 for reading From Cufflinks Version 2.2.1 When Attempti
by
Y
• 0
I figured out how to make it work. The bams have to be comma separated not just by space: cd "${input_directory_with_associated_bam_fi…
Comment: Search RCSB with a list of protein names?
by
Joseph
• 0
Hey, this is so close to what I'm looking for - I clarified in my edit. This is a great way to batch download lots of PDBs in RCSB by their…
Comment: Search RCSB with a list of protein names?
by
Joseph
• 0
This is a really neat package, but I don't think it does exactly what I want, so I've clarified my question. This seems like it grabs a PD…
Comment: How to get the gft file to run velocyto for velocity analysis?
by
Chris
▴ 200
Yes, thank you! I figured it out but I got an error: velocyto run10x -m Hg38_rmsk.gtf WT/outs /cellranger/reference/refdata-cellranger…
Comment: How to get the gft file to run velocyto for velocity analysis?
by
bk11
★ 1.3k
You can get from here- [UCSC][1]. Just click on get output botton. [1]: https://genome.ucsc.edu/cgi-bin/hgTables?hgsid=611454127_NtvlaW…
Answer: Search RCSB with a list of protein names?
by
bk11
★ 1.3k
You can use `Bio3D` an R Package for this. [http://thegrantlab.org/bio3d_v2/tutorials/installing-bio3d][1] [http://thegrantlab.org/b…
Comment: Search RCSB with a list of protein names?
by
GenoMax
134k
You can download various types of bulk data files from RCSB here: https://www.rcsb.org/docs/programmatic-access/file-download-services You…
Comment: How to perform hypothesis testing on contingency tables and compare with the nul
by
RK
• 0
Thank you so much
Comment: How to perform hypothesis testing on contingency tables and compare with the nul
by
Jean-Karim Heriche
26k
So just do a regular chi-squared test as I explained above. The null hypothesis is that there are as many mutated/unmutated trinucleotides …
Comment: biomaRT doesn't report uniprot id
by
Ram
40k
A couple of notes: 1. It's biomaRt, not biomaRT 2. It's ensembl as in ensEMBL, not the word ensemble. I've fixed those for you but please…
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