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21 results • Page
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News:
Announcement: Research Topic "Mechanistic, Machine Learning and Hybrid Models of the 'Other' Endocrine Regulatory Systems in Health and Disease", Vol…
mathematical-modelling
endocrinology
ML
systems-biology
machine-learning
20 days ago by
Johannes W. Dietrich
• 0
12
votes
2
replies
421
views
News:
8th Berlin Summer School in NGS Data Analysis (June 10-14, 2024) - already half booked
Workshop
RNA-Seq
DNA-Seq
Illumina
8 days ago by
David Langenberger
11k
8
votes
2
replies
747
views
News:
FINAL CALL - Single-Cell RNA-Seq Data Analysis: A Practical Introduction (May 6-8, 2024 in Berlin)
single-cell
sequencing
13 days ago by
David Langenberger
11k
0
votes
0
replies
150
views
News:
Online course: Network Analysis in R
NetworkAnalyis
R
4 days ago by
carlopecoraro2
★ 2.5k
2
votes
0
replies
104
views
News:
Course Functional Programming with R
Rstats
TScourses
Rproject
KeepLearning
Rlang
8 days ago by
Transmitting Science communication
▴ 70
0
votes
0
replies
104
views
News:
Online course: Multivariate Data Analysis with R and vegan
Multivariate-Statistics
vegan
R
updated 10 days ago by
Ram
43k • written 10 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
152
views
News:
Online course: Analysis of Prokaryotic Pangenomes (Last call)
Prokaryotic
Bacterial-Genomics
Pangenomics
updated 21 days ago by
Ram
43k • written 21 days ago by
carlopecoraro2
★ 2.5k
1
vote
0
replies
116
views
News:
Online Live Course: Introduction to Machine Learning in R
Rstats
TScourses
Rlang
Rproject
updated 7 days ago by
Ram
43k • written 7 days ago by
Transmitting Science communication
▴ 70
0
votes
0
replies
73
views
News:
Course - Agent-Based Modelling Using NetLogo - University of Lodz, Poland
Netlogo
Individual-Based-Models
Agent-Based-Models
updated 8 hours ago by
Ram
43k • written 12 hours ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
127
views
News:
Online course: Food Traceability Using Genomic Tools
Nanopore
Genomic-Tools
Illumina
Food-Traceability
updated 15 days ago by
Ram
43k • written 15 days ago by
carlopecoraro2
★ 2.5k
2
votes
0
replies
107
views
News:
Online Course Introduction to Network Analysis and Modelling
Python
Network-Analysis
updated 7 days ago by
Ram
43k • written 7 days ago by
Transmitting Science communication
▴ 70
0
votes
0
replies
68
views
News:
Online course: Meta-analysis in R
Meta-Analysis
Statistics
R
updated 8 hours ago by
Ram
43k • written 10 hours ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
135
views
News:
Online course: Eukaryotic Metabarcoding
Metabarcoding
Biodiversity
R
eDNA
17 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
184
views
News:
Online course: Reproducibility in Bioinformatics
Singularity
Version-Control
Docker
Containers
updated 21 days ago by
Ram
43k • written 21 days ago by
carlopecoraro2
★ 2.5k
2
votes
0
replies
111
views
News:
Online Course Generalised Additive Mixed Models (GAMM): modelling space-time correlation structures
GAMM
Rlang
Rstats
Rproject
updated 7 days ago by
Ram
43k • written 7 days ago by
Transmitting Science communication
▴ 70
0
votes
0
replies
171
views
News:
Online course: Meta-analysis in R
Meta-Analysis
R
updated 7 days ago by
Ram
43k • written 7 days ago by
carlopecoraro2
★ 2.5k
1
vote
0
replies
158
views
News:
Landscape Genomics course in Switzerland
LFMM
Landscape-Genomics
Sambada
R
Local-Adaptation
updated 10 days ago by
Ram
43k • written 12 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
123
views
News:
Deadline Approaching: PETs for Public Health Challenge
privacy
public-health-challenge
updated 3 days ago by
Ram
43k • written 3 days ago by
polarise
▴ 380
2
votes
0
replies
105
views
News:
Online course: Genome Annotation
Genome-Assembly
RNA-seq
Genome-Annotation
updated 9 days ago by
Ram
43k • written 9 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
149
views
News:
Online course: Introduction to GWAS
GWAS
Imputation
StatisticalPower
25 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
143
views
News:
Final Call - Bioinformatics Pipeline Development with Nextflow (May 27-29, 2024)
workshop
RNA-seq
nextflow
DNA-seq
updated 2 days ago by
Ram
43k • written 2 days ago by
David Langenberger
11k
21 results • Page
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Recent Votes
C: samtools sort bam file
A: samtools sort bam file
Answer: Downloaded pdb's on rcsb.org
Comment: Downloaded pdb's on rcsb.org
Comment: Downloaded pdb's on rcsb.org
Comment: Downloaded pdb's on rcsb.org
Answer: Downloaded pdb's on rcsb.org
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swbarnes2
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GenoMax
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jkbonfield
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Recent Replies
Comment: Removing duplicates
by
joe
▴ 500
I'd try those OP @samuel recommends My guess is you're new to ONT, fast5 is the 'raw data' which is current over time...other than generat…
Comment: RNA seq differential expression analysis
by
swbarnes2
14k
No. Find a tutorial, try it, then if you have specific questions, ask of the galaxy help site.
Answer: Adding CB tag to bam file
by
swbarnes2
14k
Shouldn't you use PicardTools for this?
Comment: Downloaded pdb's on rcsb.org
by
Ram
43k
Sure. Or, one could do: bash try.bash "Homo sapiens" AHR | xargs -I v_pdb curl -s -o v_pdb.pdb https://files.rcsb.org/view/v_pdb.pdb
Comment: Downloaded pdb's on rcsb.org
by
iamsmor
• 0
thank you so much
Comment: Downloaded pdb's on rcsb.org
by
GenoMax
141k
This may be the best option. Get the PDB ID's $ ./get.sh "Mus musculus" AHR 4M4X 5NJ8 5V0L 8H77 Then use `curl` to g…
Comment: Downloaded pdb's on rcsb.org
by
Ram
43k
It gives you the first 25 results though. I'll see if I can change that. EDIT: I've updated that number to 250. I'm hoping you won't need …
Comment: Downloaded pdb's on rcsb.org
by
iamsmor
• 0
thank you very much
Answer: Downloaded pdb's on rcsb.org
by
Ram
43k
I'm going to build off of OP's query and give them a simple script: ```bash organism=$(echo $1 | sed 's/ /%20/g') gene=$2 curl -s https:/…
Comment: miRNAs quantification using mirdeep2 tool
by
GenoMax
141k
This question does not make complete sense. If you have your own data files why do you need deep sequencing reads? Genome (can be download…
Comment: Downloaded pdb's on rcsb.org
by
GenoMax
141k
For a non-programmer using the search builder link included above may be the best option. Even that is not very user friendly.
Comment: Downloaded pdb's on rcsb.org
by
Ram
43k
That's how they seem to have written their query - automating that is a bit of a pain though as it takes a crazy JSON as input.
Comment: Downloaded pdb's on rcsb.org
by
GenoMax
141k
You can use the "Advanced query" builder (https://www.rcsb.org/search/advanced ) to create a query like: https://www.rcsb.org/search?requ…
Comment: Downloaded pdb's on rcsb.org
by
Ram
43k
PDB has a search API: https://search.rcsb.org/#search-example-1 Here's the JSON from your search query: ``` { "query": { "type": "grou…
Comment: Downloaded pdb's on rcsb.org
by
iamsmor
• 0
Thank you very much. Actually I looked at there, but actually I want to find something like according to search url like this [QUERY: Gene …
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