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News:
Free draft copy of book on bioinformatics tools
alignment
Assembly
RNA-seq
next-gen
updated 17 days ago by
Ram
37k • written 7.7 years ago by
ugly.betty77
★ 1.1k
1
vote
6
replies
594
views
News:
Course - FLOW CYTOMETRY ANALYSIS WITH R/BIOCONDUCTOR
Bioconductor
FlowCytometry
R
updated 23 days ago by
synat.keam
▴ 70 • written 7 weeks ago by
carlopecoraro2
★ 2.2k
9
votes
6
replies
1.8k
views
News:
No more hidden solutions in bioinformatics
precision-medicine
genome-sequencing
updated 17 days ago by
Ram
37k • written 7.7 years ago by
HG
★ 1.2k
1
vote
5
replies
591
views
News:
Cancer Genomics course - 2 seats left
Genomics
Cancer-Genomics
R
updated 3 days ago by
Ram
37k • written 4 weeks ago by
carlopecoraro2
★ 2.2k
1
vote
2
replies
267
views
News:
Course: Network Analysis in R
NetworkAnalyis
R
14 days ago by
carlopecoraro2
★ 2.2k
0
votes
2
replies
542
views
News:
Online Course - A Practical Introduction to NGS Data Analysis (February 01-03, 2023)
NGS
DNAseq
variant-calling
RNAseq
13 days ago by
David Langenberger
9.8k
1
vote
2
replies
422
views
News:
New chat server (Discord) for bioinformatics
community
28 days ago by
Samuel Lampa
★ 1.3k
0
votes
2
replies
144
views
News:
NCBI update complete. Aspera users please update your client.
NCBI
Submissions
GenBank
3 days ago by
PeterC_NCBI
▴ 180
0
votes
1
reply
259
views
News:
Courses in January - still a few seats available
R-Shiny
Genomics
Unix
R
updated 3 days ago by
Ram
37k • written 6 weeks ago by
carlopecoraro2
★ 2.2k
0
votes
1
reply
353
views
News:
Sex Chromosome Evolution course
Genomics
Sex-Chromosome-Evolution
updated 3 days ago by
Ram
37k • written 4 weeks ago by
carlopecoraro2
★ 2.2k
1
vote
1
reply
2.3k
views
News:
Benefits of DNA Testing - Xcode Life sciences provides preventive healthcare solution
personal-genomics
genetic-testing
updated 27 days ago by
Ram
37k • written 7.7 years ago by
sabitha
• 0
0
votes
0
replies
93
views
News:
course - Multivariate data analysis with R and vegan
Statistics
MultivariateAnalysis
R
vegan
11 days ago by
carlopecoraro2
★ 2.2k
0
votes
0
replies
210
views
News:
Online course - Genome Assembly and Annotation
Long-reads
Genome-Annotation
Biodiversity
Genome-Assembly
updated 3 days ago by
Ram
37k • written 4 weeks ago by
carlopecoraro2
★ 2.2k
0
votes
0
replies
195
views
News:
Metagenomics tools recommeder system
NGS
Metagenomics
Recommender-system
updated 23 days ago by
Ram
37k • written 24 days ago by
KATA
• 0
0
votes
0
replies
102
views
News:
Eukaryotic Metabarcoding course
eDNA
Metabarcoding
updated 3 days ago by
Ram
37k • written 3 days ago by
carlopecoraro2
★ 2.2k
0
votes
0
replies
169
views
News:
Bioinformatics courses in February
Genomics
BioinformaticsTraining
11 days ago by
carlopecoraro2
★ 2.2k
0
votes
0
replies
178
views
News:
Course on Generalised Additive Models In R
Statistics
GAMs
R
28 days ago by
carlopecoraro2
★ 2.2k
0
votes
0
replies
176
views
News:
Course - INTRODUCTION TO PYTHON PROGRAMMING FOR BIOLOGISTS
Bioinformatics
Programming
Python
2 days ago by
carlopecoraro2
★ 2.2k
2
votes
0
replies
146
views
News:
Course - Reproducibility in Bioinformatics
Reproducibility
updated 3 days ago by
Ram
37k • written 9 days ago by
carlopecoraro2
★ 2.2k
0
votes
0
replies
151
views
News:
de novo RNA-seq Analysis Workshop
virtual
workshop
rna
transcriptome
17 days ago by
mia.nahom
• 0
0
votes
0
replies
203
views
News:
Metabarcoding in Microbial Ecology
Metabarcoding
Qiime2
16S
MicrobialEcology
R
23 days ago by
carlopecoraro2
★ 2.2k
0
votes
0
replies
236
views
News:
Course - Machine Learning in R (for omics data)
Genomics
omics
MachineLearning
R
9 days ago by
carlopecoraro2
★ 2.2k
1
vote
0
replies
236
views
News:
course: Meta-analysis in R
Statistics
MetaAnalysis
R
22 days ago by
carlopecoraro2
★ 2.2k
0
votes
0
replies
188
views
News:
Reminder: NCBI Aspera access, update Aspera Connect by Feb 1, 2023
Aspera
NCBI
SRA
GenBank
13 days ago by
PeterC_NCBI
▴ 180
0
votes
0
replies
191
views
News:
Hands-On NGS Data Analysis Workshops 2023
NGS
Workshop
RNA-Seq
DNA-Seq
27 days ago by
David Langenberger
9.8k
0
votes
0
replies
240
views
News:
For NCBI Aspera access, update Aspera Connect by Feb 1, 2023
Aspera
NCBI
GenBank
23 days ago by
PeterC_NCBI
▴ 180
0
votes
0
replies
313
views
News:
Winter School in Bioinformatics - last seats available
Genomics
Unix
RNA-seq
docker
updated 3 days ago by
Ram
37k • written 5 weeks ago by
carlopecoraro2
★ 2.2k
0
votes
0
replies
96
views
News:
Course - Mass Spectrometry and Proteomics in R/Bioconductor
Bioconductor
MassSpectrometry
R
Proteomics
6 days ago by
carlopecoraro2
★ 2.2k
0
votes
0
replies
239
views
News:
GSEA in R/Bioconductor course
Bioconductor
R
GSEA
GeneSetEnrichmentAnalysis
22 days ago by
carlopecoraro2
★ 2.2k
0
votes
0
replies
167
views
News:
Genomic Prediction course
Selective-Breeding
Genomic-Prediction
updated 3 days ago by
Ram
37k • written 20 days ago by
carlopecoraro2
★ 2.2k
30 results • Page
1 of 1
Recent Votes
Answer: how to split multi-fasta file into single fasta file named by header
A: How To Split A Multiple Fasta
Comment: Question on how to filter DESeq2 results correctly and use of the results functi
Answer: Is it possible to do bedtools multicov across the entire genome?
Answer: Is it possible to do bedtools multicov across the entire genome?
Answer: Is it possible to do bedtools multicov across the entire genome?
Answer: Is it possible to do bedtools multicov across the entire genome?
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Recent Replies
Comment: ceres score in crispr screen
by
edus_bioinfo
▴ 20
I solved the issue with using bowtie. But now I am experiencing this issue; > Error in makeGRangesFromDataFrame(., seqinfo = genomeinfo, k…
Comment: Protein protein interactions
by
Peerzada
• 0
Sir, How much time does this server take to give output for 1 pair of proteins as I have submitted several hours ago and it still shows ru…
Comment: Question on how to filter DESeq2 results correctly and use of the results functi
by
Frederik
• 0
Thanks alot :)
Comment: Is it possible to do bedtools multicov across the entire genome?
by
amy__
▴ 50
Amazing, thank you so much! BW, Amy
Answer: Is it possible to do bedtools multicov across the entire genome?
by
GenoMax
125k
`mosdepth` ([**LINK**][1]) is an excellent/fast alternative. [1]: https://github.com/brentp/mosdepth
Answer: Index with unmasked or masked in HISAT2
by
GenoMax
125k
Use `top level` file. See [**README**][1] more information about other files you are referring to. [1]: https://ftp.ebi.ac.uk/en…
Answer: Is it possible to do bedtools multicov across the entire genome?
by
Nicolas Rosewick
10k
Simply use then `bedtools genomecov` with `-d` parameter : https://bedtools.readthedocs.io/en/latest/content/tools/genomecov.html
Answer: How to enable multiple cores/threads for Bowtie2 or BWA using Macbook M2 chip?
by
GenoMax
125k
Programs do not use all the threads/cores all the time. They will do so during appropriate part of the analysis. As long as you have enable…
Comment: Clustering and dynamic tree cutting
by
andres.firrincieli
3.1k
Help me to understand. Is this a clustering analysis of differentially expressed genes or an unsupervised clustering analysis (eg WGCNA)?
Answer: Obtaining every"Protein ID" from a genome in OMA
by
Adrian Altenhoff
★ 1.0k
Dear Christy, thanks for your interest in the OMA browser. indeed, there seems to be an issue with listing all the genes of a species. W…
Answer: Error, (in LoadSpliceMap) string to parse is too long
by
Adrian Altenhoff
★ 1.0k
Dear Ziqing this error seems to be related to the splicing information file of one of the genomes. Given that it worked previously, I as…
Comment: RNA Editing data from RNA-seq
by
i.sudbery
16k
RNA editing is detected by identifying differences between the DNA sequence and the RNAseq. If you compare your RNAseq data to the referen…
Comment: How to find the most frequent alternative-splicing event from DEXSEQ data?
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i.sudbery
16k
DEXSeq is probably not the correct tool for what you are trying to do. If focuses of changes to which exons are included and which exclude…
Answer: How to use CAFE from Orthofinder Results
by
dariober
14k
I have been looking into something similar (maybe, not sure myself) and I didn't know about cafe. It looks good, thanks for bringing it up.…
Comment: Gene Set Enrichment Analysis after DESeq2
by
Lada
▴ 10
HI Sreeraj, I don't know what is your model organism. For humans, mouse, drosophila and similar stuff, I guess it's easy because you can …
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