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161 results • Page 1 of 4
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729
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161
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108k
views
100 follow
News: The Biostar Handbook. A bioinformatics e-book for beginners.
training handbook
updated 7 days ago by 1.6k • written 6.3 years ago by 97k
32
votes
6
replies
12k
views
7 follow
News: Ncbi Releases Entrez Direct, The Entrez Utilities On The Unix Command Line
ncbi genbank pubmed command-line entrez
updated 19 days ago by 38k • written 9.1 years ago by 153k
17
votes
6
replies
8.4k
views
News: Final registration deadline: September 15th - Bioinformatics Hands-On NGS Data Analysis Workshops 2014
methylation RNA-seq
updated 15 days ago by 38k • written 9.0 years ago by 9.9k
9
votes
5
replies
8.2k
views
News: A New Rest Based Api For Kegg: Kyoto Encyclopedia Of Genes And Genomes
kegg api
updated 26 days ago by 38k • written 10.3 years ago by ▴ 50
15
votes
18
replies
7.3k
views
6 follow
News: New Free Community Tutorial Website For Bioinformatics Learning
ChIP-seq genome snp RNA-seq
updated 22 days ago by 38k • written 9.7 years ago by ▴ 610
21
votes
7
replies
7.1k
views
News: Survey: Rna-Seq Analysis For Differential Gene/Transcript Expression [Updated With Results]
transcript RNA-seq gene
updated 26 days ago by 38k • written 10.3 years ago by ▴ 250
12
votes
8
replies
6.4k
views
News: rRNA Depletion / Poly-A Selection Responsible for RNA-seq Bias
rRNA-depletion RNA-seq-bias
updated 15 days ago by 38k • written 8.7 years ago by ▴ 640
15
votes
3
replies
6.4k
views
News: Top Bioinformatics Contributions Of 2013
bioinformatics
updated 20 days ago by 38k • written 9.3 years ago by ★ 1.1k
19
votes
11
replies
6.3k
views
News: Solid Software Tools: Denovo Assembly/Xsq Tools Pipeline Mirrored At Biostar
SOLID
updated 27 days ago by 38k • written 10.6 years ago by 97k
31
votes
4
replies
6.1k
views
News: Rosalind: A Novel Bioinformatics Education Platform
education
updated 27 days ago by 38k • written 10.5 years ago by ▴ 310
25
votes
7
replies
5.8k
views
News: Pubmed Commons : A System That Enables Researchers To Share Their Opinions About Scientific Publications
ncbi pubmed
updated 20 days ago by 38k • written 9.4 years ago by 153k
45
votes
19
replies
5.6k
views
8 follow
News: Gamestorming For Bioinformatics
gamestorming
updated 27 days ago by 38k • written 10.5 years ago by 27k
6
votes
0
replies
5.0k
views
News: Game Changer? Illumina Nextseq 500
illumina
updated 19 days ago by 38k • written 9.2 years ago by ★ 1.3k
6
votes
7
replies
4.8k
views
News: Illumina Nextseq 500 And Hiseq X Ten: Newer Tech Lowering Cost Per Mbp
Illumina
updated 19 days ago by 38k • written 9.2 years ago by ▴ 640
2
votes
0
replies
4.7k
views
News: LAST CALL: Two days left to register for our workshop 'RNA-seq Bioinformatics: A Practical Introduction'
RNA-Seq workshop
updated 15 days ago by 38k • written 8.7 years ago by 9.9k
0
votes
0
replies
4.6k
views
News: Bioinformatics Training Courses - Metagenomics and NGS data analysis - Sydney and Canberra, Australia
metagenomics training next-gen-sequencing
updated 15 days ago by 38k • written 8.8 years ago by 49k
7
votes
3
replies
4.2k
views
News: Pathway Commons 2 - Search And Visualize Public Biological Pathway Information. Single Point Of Access.
api cytoscape
updated 20 days ago by 38k • written 9.3 years ago by ★ 1.2k
3
votes
0
replies
4.2k
views
News: Free Online Harvardx Course, Data Analysis For Genomics, Starts April 7
methylation bioconductor ChIP-seq RNA-seq R
updated 15 days ago by 38k • written 9.0 years ago by ★ 2.2k
24
votes
7
replies
4.0k
views
News: #Bioinformatics Crowdcoding
crowd-coding
updated 22 days ago by 38k • written 9.7 years ago by 153k
1
vote
0
replies
4.0k
views
News: Hands-On Training in RNA-seq Bioinformatics: A Practical Introduction - Mapping, Visualization, Basic Analyses
next-gen RNA-Seq workshop
updated 15 days ago by 38k • written 8.8 years ago by 9.9k
23
votes
7
replies
4.0k
views
News: Research accounts on GitHub
github git
updated 15 days ago by 38k • written 8.9 years ago by 153k
8
votes
6
replies
3.7k
views
News: Last Call: Upcoming Workshop - Rna-Seq Bioinformatics: A Practical Introduction
RNA-seq
updated 26 days ago by 38k • written 10.2 years ago by 9.9k
6
votes
9
replies
3.6k
views
News: 1000 Genomes : The Initial Phase 3 variant list and phased genotypes.
1000genomes
updated 15 days ago by 38k • written 8.7 years ago by 153k
3
votes
3
replies
3.6k
views
News: A Tale Of Next Generation Sequencing Platforms: Ion Torrent, Pacific Biosciences And Illumina Miseq
sequencing
updated 28 days ago by 38k • written 10.6 years ago by 97k
3
votes
2
replies
3.5k
views
News: Course/Workshop: Informatics For Rna-Sequence Analysis (June, 2013)
RNA-seq
updated 26 days ago by 38k • written 10.2 years ago by 20k
0
votes
0
replies
3.5k
views
News: Journal Of Bioinformatics Research Studies- Call For Papers
publication biology
updated 15 days ago by 38k • written 9.0 years ago by • 0
11
votes
2
replies
3.4k
views
News: Coursera: Computational Molecular Evolution
course
updated 25 days ago by 38k • written 9.8 years ago by 153k
5
votes
2
replies
3.4k
views
News: Tuesday 10/29 Live Tour Of New Features In Integrated Genome Browser 8
genome-browser RNA-seq ChIP-seq
updated 21 days ago by 38k • written 9.4 years ago by ★ 2.3k
6
votes
1
reply
3.4k
views
News: Symposium And Rna-Seq Data Analysis Workshop Charlotte May 13-14
RNA RNA-seq training
updated 15 days ago by 38k • written 9.0 years ago by ★ 2.3k
9
votes
4
replies
3.4k
views
News: Conference Announcement - Camda 2013
conference classification
updated 26 days ago by 38k • written 10.2 years ago by ▴ 240
5
votes
1
reply
3.3k
views
News: Broad Gatk Haplotypecaller Speed Improved 2-4 X By Cooperation With Intel, And Incremental Multi-Sample Calling Made Possible!
gatk variant-calling
updated 15 days ago by 38k • written 9.0 years ago by ★ 5.2k
12
votes
7
replies
3.3k
views
News: Welcome Ensembl REST with more endpoints!
ensembl rest-api
updated 12 days ago by 38k • written 8.4 years ago by ★ 5.2k
2
votes
0
replies
3.3k
views
News: Bioinformatics Open Days 2Nd Edition - 14 And 15 Of March, 2013 At The University Of Minho, Campus Gualtar, Braga, Portugal.
conference
updated 26 days ago by 38k • written 10.2 years ago by ▴ 20
17
votes
9
replies
3.2k
views
News: My Ncbi Curriculum Vitae Web Application: Sciencv
ncbi
updated 21 days ago by 38k • written 9.5 years ago by 153k
5
votes
2
replies
3.2k
views
News: Summary of AGBT 2015
AGBT2015 AGBT
updated 5 days ago by 38k • written 8.1 years ago by ▴ 640
8
votes
1
reply
3.1k
views
News: LAST DAY TO REGISTER - NGS Workshop 2015: A Practical Introduction to NGS Data Analysis (Oxford, UK)
RNA-Seq workshop
updated 12 days ago by 38k • written 8.4 years ago by 9.9k
11
votes
0
replies
3.1k
views
News: BWA 0.7.11 is out, supports ALT contigs
BWA
updated 8 days ago by 38k • written 8.2 years ago by 103k
2
votes
0
replies
3.1k
views
News: Promoter Design Challenge: Design A Plant Promoter And We Will Construct It.
plant-promoter transcription-factor
updated 26 days ago by 38k • written 10.1 years ago by ▴ 20
12
votes
0
replies
3.1k
views
News: Looking For Feedback On The Json Output For Ncbi E-Utilities
ncbi eutils
updated 26 days ago by 38k • written 10.3 years ago by ▴ 360
9
votes
3
replies
3.0k
views
News: New Human Genome Assembly (Grch38) Released
human-genome assembly
updated 20 days ago by 38k • written 9.2 years ago by 153k
0
votes
0
replies
3.0k
views
News: sRNAbench: profiling of small RNAs and its sequence variants in single or multi-species high-throughput experiments
webserver isomiRs microRNA small-RNA
updated 12 days ago by 38k • written 8.4 years ago by 9.9k
2
votes
0
replies
3.0k
views
News: Short Course And Workshop On Rna-Seq Analysis
RNA-seq
updated 19 days ago by 38k • written 9.2 years ago by ▴ 60
12
votes
8
replies
3.0k
views
News: 'Potential Rna-Dna Binding Site In Alu Repeat', Or 'Why Should I Allow Multiple Mapping Positions When Analyzing Chipseq Data?'
chipseq rna
updated 22 days ago by 38k • written 9.7 years ago by 9.9k
3
votes
0
replies
3.0k
views
News: Tumorportal - A Tool For Exploring A Pan-Cancer Dataset
tcga cancer-genomics
updated 18 days ago by 38k • written 9.1 years ago by 19k
7
votes
1
reply
2.9k
views
News: A Multi-Split Mapping Algorithm For Circular Rna, Splicing, Trans-Splicing, And Fusion Detection
ngs mapping
updated 19 days ago by 38k • written 9.1 years ago by 9.9k
10
votes
1
reply
2.9k
views
News: Ucsc: Dna Sequences In Web Pages Indexed By Bing.Com / Microsoft Research (All Phenotype And Literature Tracks)
web ucsc
updated 19 days ago by 38k • written 9.2 years ago by 153k
5
votes
0
replies
2.8k
views
News: Penn State now offers an Online Graduate Certificate: Applied Bioinformatics
bioinformatics-education
updated 13 days ago by 38k • written 8.6 years ago by 97k
3
votes
2
replies
2.8k
views
News: Bioinformatics On Windows And Windows Cloud
windows cloud
updated 26 days ago by 38k • written 10.3 years ago by ▴ 20
2
votes
3
replies
2.8k
views
News: Summer Course On Analyzing Next-Generation Sequencing Data, June 10-20, Kellog Biological Station, Michigan State University
education
updated 26 days ago by 38k • written 10.1 years ago by 97k
10
votes
0
replies
2.8k
views
News: Cfp: Camda 2013 Challenge: Big Data In Life Sciences
ngs conference
updated 26 days ago by 38k • written 10.0 years ago by ▴ 240
161 results • Page 1 of 4
Recent Votes
Answer: Adding MBC/UMI RX tag to read name
Comment: Is it ok to trim assembled paired-end fastq files with cutadapt 3.4 ?
Transforming And Manipulating Color Space Reads
Comment: Seeking Jr. Bioinformatician Position
Comment: 10x 3' library creates R1 and R2 fastq files with the same read length
The Biostar Handbook. A bioinformatics e-book for beginners.
The Biostar Handbook. A bioinformatics e-book for beginners.
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Scholar to GenoMax 127k
Popular Question to Omics data mining ▴ 210
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Recent Replies
Answer: Adding MBC/UMI RX tag to read name by Christian ▴ 20
# this script takes a BAM file and moves the UMI tag from the RX tag # and appends it to the read name # argument 1: input fi…
Comment: Is it ok to trim assembled paired-end fastq files with cutadapt 3.4 ? by GenoMax 127k
> I´m concatenating two sets of files before trimming to remove > sequences from both of them That only makes sense if it is the same samp…
Comment: getting coding exon information from Ensembl API by Sarah ▴ 30
Why does this bother you ! Who is you ? the admin of this forum ? we are here to learn, not to be watched. Dont comment my post again ple…
Comment: Is it ok to trim assembled paired-end fastq files with cutadapt 3.4 ? by Bengisu • 0
Thank you for sharing. I´m concatenating two sets of files before trimming to remove sequences from both of them. But, I don´t know if it i…
Comment: getting coding exon information from Ensembl API by Pierre Lindenbaum 153k
[again, and again and again, so many questions and no validation][1] [1]: https://www.biostars.org/u/67462?active=posts
Comment: Seeking Jr. Bioinformatician Position by santos48 ▴ 40
Thank you so much, I will also add my e-mail.
Comment: Seeking Jr. Bioinformatician Position by GenoMax 127k
There is no way for people to contact you (via personal messages or otherwise) on this forum. You may want to look at alternate avenues if …
Comment: Snakemake vs Nextflow Upcoming bioinformatics Project by colindaven 4.5k
Don't worry about groovy too much. I have been writing productive nextflow pipelines for a couple of years and still haven't learned much i…
Comment: Java -xmx option does not limit memory usage in the ImputePipelinePlugin? by lcj34 ▴ 220
Does the amount of memory keep increasing, or does it start high and remain stable? Do you have a log file you can post? That may give us…
Comment: 10x 3' library creates R1 and R2 fastq files with the same read length by GenoMax 127k
> Then, we can just effectively ignore everything from bp 29 onwards? Yes.
Comment: 10x 3' library creates R1 and R2 fastq files with the same read length by bompipi95 ▴ 120
Hi! Jusrt so that I understand this correctly, for the 10x v3 libraries sequenced on Novaseq, does it mean that if R1 is 150bp and looks li…
Comment: Java -xmx option does not limit memory usage in the ImputePipelinePlugin? by GenoMax 127k
Based on the program name `run_pipeline.pl` this appears to be a perl script. Option you are referring to is for `Java`. Is that perl scrip…
Comment: Is it ok to trim assembled paired-end fastq files with cutadapt 3.4 ? by GenoMax 127k
> So, I prefer to work assembled fastq files into one fastq rather than > two. What does this mean? Are you concatenating two sets of file…
Comment: What is exactly meant by "GENCODE TSS"? by ntsopoul ▴ 40
checkout: chipseeker package there is a function which gets you the tss getPromoters(TxDb=txdb, upstream=3000, downstream=3000) as you c…
Comment: SRA Taxonomy Analysis - difference between tables and web by GenoMax 127k
> Apparently it is ok for some accessions In that case, your best bet is to contact NCBI help desk with examples of what works and what do…
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