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News: FINAL CALL - Single-Cell RNA-Seq Data Analysis: A Practical Introduction (May 6-8, 2024 in Berlin)
single-cell sequencing
19 days ago by David Langenberger 11k
3
votes
2
replies
553
views
News: Announcement: Research Topic "Mechanistic, Machine Learning and Hybrid Models of the 'Other' Endocrine Regulatory Systems in Health and Disease", Vol…
mathematical-modelling endocrinology ML systems-biology machine-learning
26 days ago by Johannes W. Dietrich • 0
12
votes
2
replies
440
views
News: 8th Berlin Summer School in NGS Data Analysis (June 10-14, 2024) - already half booked
Workshop RNA-Seq DNA-Seq Illumina
15 days ago by David Langenberger 11k
0
votes
0
replies
198
views
News: Online course: Reproducibility in Bioinformatics
Singularity Version-Control Docker Containers
updated 27 days ago by 43k • written 27 days ago by ★ 2.5k
0
votes
0
replies
186
views
News: Online course: Meta-analysis in R
Meta-Analysis Statistics R
updated 6 days ago by 43k • written 6 days ago by ★ 2.5k
0
votes
0
replies
181
views
News: Online course: Meta-analysis in R
Meta-Analysis R
updated 13 days ago by 43k • written 13 days ago by ★ 2.5k
0
votes
0
replies
176
views
News: Online course: Network Analysis in R
NetworkAnalyis R
10 days ago by carlopecoraro2 ★ 2.5k
1
vote
0
replies
172
views
News: Landscape Genomics course in Switzerland
LFMM Landscape-Genomics Sambada R Local-Adaptation
updated 16 days ago by 43k • written 18 days ago by ★ 2.5k
0
votes
0
replies
171
views
News: Course - Agent-Based Modelling Using NetLogo - University of Lodz, Poland
Netlogo Individual-Based-Models Agent-Based-Models
updated 6 days ago by 43k • written 6 days ago by ★ 2.5k
0
votes
0
replies
171
views
News: Final Call - Bioinformatics Pipeline Development with Nextflow (May 27-29, 2024)
workshop RNA-seq nextflow DNA-seq
updated 8 days ago by 43k • written 8 days ago by 11k
0
votes
0
replies
162
views
News: Online course: Analysis of Prokaryotic Pangenomes (Last call)
Prokaryotic Bacterial-Genomics Pangenomics
updated 27 days ago by 43k • written 27 days ago by ★ 2.5k
0
votes
0
replies
143
views
News: Online course: Eukaryotic Metabarcoding
Metabarcoding Biodiversity R eDNA
23 days ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
141
views
News: Deadline Approaching: PETs for Public Health Challenge
privacy public-health-challenge
updated 9 days ago by 43k • written 9 days ago by ▴ 380
0
votes
0
replies
141
views
News: Online course: Food Traceability Using Genomic Tools
Nanopore Genomic-Tools Illumina Food-Traceability
updated 21 days ago by 43k • written 21 days ago by ★ 2.5k
0
votes
0
replies
127
views
News: upcoming online statistical courses
Statistics R Data-Analysis
updated 3 days ago by 43k • written 4 days ago by ★ 2.5k
1
vote
0
replies
127
views
News: Online Live Course: Introduction to Machine Learning in R
Rstats TScourses Rlang Rproject
updated 13 days ago by 43k • written 13 days ago by ▴ 70
2
votes
0
replies
121
views
News: Online Course Generalised Additive Mixed Models (GAMM): modelling space-time correlation structures
GAMM Rlang Rstats Rproject
updated 13 days ago by 43k • written 13 days ago by ▴ 70
2
votes
0
replies
120
views
News: Online Course Introduction to Network Analysis and Modelling
Python Network-Analysis
updated 13 days ago by 43k • written 13 days ago by ▴ 70
0
votes
0
replies
117
views
News: Online course: Multivariate Data Analysis with R and vegan
Multivariate-Statistics vegan R
updated 16 days ago by 43k • written 17 days ago by ★ 2.5k
2
votes
0
replies
115
views
News: Online course: Genome Annotation
Genome-Assembly RNA-seq Genome-Annotation
updated 15 days ago by 43k • written 15 days ago by ★ 2.5k
2
votes
0
replies
112
views
News: Course Functional Programming with R
Rstats TScourses Rproject KeepLearning Rlang
14 days ago by Transmitting Science communication ▴ 70
3
votes
0
replies
108
views
News: Interested in Spatial Omics?
Bioconductor Spatial-Omics Spatial-Transcriptomics
updated 1 day ago by 43k • written 1 day ago by ★ 2.5k
0
votes
0
replies
76
views
News: Online course: DNA methylation
Pacbio Nanopore DnaMethylation Evolution
2 days ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
75
views
News: hands-on introduction to generalized linear models (GLMs) using R
Generalized-Linear-Models GLM R
updated 13 hours ago by 43k • written 1 day ago by ★ 2.5k
0
votes
0
replies
67
views
News: 8th Berlin Summer School in NGS Data Analysis - Apply Now
variantcalling DNAseq illumina RNAseq transcriptomics
18 hours ago by David Langenberger 11k
25 results • Page 1 of 1
Recent Votes
Comment: Adding CB tag to bam file
Comment: alignment result
Comment: clustalo - align milions of short seq, memory issue
Answer: clustalo - align milions of short seq, memory issue
Comment: downloading genomes in fasta format from accession ids
Comment: PCA plot (Suggestions Needed)
Answer: PCA plot (Suggestions Needed)
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Recent Replies
Comment: To get p-values for the TPM by dsull ★ 5.8k
OK, not sure why your intention is to use RSEM p-values for, but at least tell us the commands you ran then otherwise how are we supposed t…
Comment: Fetch table from clinvar database according to a list of rsid by Pierre Lindenbaum 161k
> Don't forget to follow up on your threads. If an answer was helpful, you should upvote it; if the answer resolved your question, you shou…
Comment: different FeatureCounts output for the same data by sehriban.buyukkilic ▴ 10
Sure, I'll inquire about the version of Rsubread. I'll keep you posted if it works :) Thanks
Comment: different FeatureCounts output for the same data by sehriban.buyukkilic ▴ 10
Yeah, let me show you my featureCounts result, it looks like this. It's too low. [1]: /media/images/eb8293fe-e6ae-4b02-92e2-0ba2075b
Comment: Adding CB tag to bam file by Pierre Lindenbaum 161k
samtools addreplacerg is for read groups. This is not what OP asked.
Comment: Adding CB tag to bam file by Maria • 0
When I try ``` samtools addreplacerg -r "@CB\tID:$cell" -o $cell.bam $LINE``` the CB tag gets add to the header, but the tag in every line …
Answer: Figures are disappeared from html report of SnpEff by Pierre Lindenbaum 161k
the remote website providing the javascript or/and the images is down or you're now behind a proxy. Check the firefox console: https://fire…
Comment: Fetch table from clinvar database according to a list of rsid by Pierre Lindenbaum 161k
ah ! and your code doesn't work because clinvar ID is not a rs-ID.
Answer: Fetch table from clinvar database according to a list of rsid by Pierre Lindenbaum 161k
$ cat input.rs rs11203366 rs11203367 rs874881 rs776453694 rs80324279 rs324420 rs112766203 wget -…
Comment: Highest variable features in single cell data by ATpoint 82k
> and these cells are not even in a single cluster. What does this mean? If you run clustering on all cells then every cell is assigned t…
Comment: Is it possible to get a list of representative genomes from a past RefSeq releas by Bertalan_Takacs ▴ 90
Yes, I can tell that, but as far as I see it doesn't contain any other information about the genomes, such as if they were representative i…
Answer: Hide positions in alignment with 99% "–" characters to ignore single sequence in by b.contreras.moreira ▴ 170
You can try <https://github.com/inab/trimal>
Comment: To get p-values for the TPM by VITALA • 0
yes i want what rsem does and i did try with prior-enhanced option/pRSEM, but i think pRSEM is for chipseq data
Comment: alignment result by ahmad.sajad4541 • 0
Thank you so much. Should i proceed for annotation step?
Comment: PCA plot (Suggestions Needed) by swbarnes2 14k
The code you already posted in the bioconductor board had simulated data, and the PCA image is the same.
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