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25 results • Page
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12
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News:
8th Berlin Summer School in NGS Data Analysis (June 10-14, 2024) - already half booked
Workshop
RNA-Seq
DNA-Seq
Illumina
15 days ago by
David Langenberger
11k
8
votes
2
replies
770
views
News:
FINAL CALL - Single-Cell RNA-Seq Data Analysis: A Practical Introduction (May 6-8, 2024 in Berlin)
single-cell
sequencing
20 days ago by
David Langenberger
11k
3
votes
2
replies
556
views
News:
Announcement: Research Topic "Mechanistic, Machine Learning and Hybrid Models of the 'Other' Endocrine Regulatory Systems in Health and Disease", Vol…
mathematical-modelling
endocrinology
ML
systems-biology
machine-learning
26 days ago by
Johannes W. Dietrich
• 0
3
votes
0
replies
108
views
News:
Interested in Spatial Omics?
Bioconductor
Spatial-Omics
Spatial-Transcriptomics
updated 1 day ago by
Ram
43k • written 1 day ago by
carlopecoraro2
★ 2.5k
2
votes
0
replies
115
views
News:
Online course: Genome Annotation
Genome-Assembly
RNA-seq
Genome-Annotation
updated 15 days ago by
Ram
43k • written 15 days ago by
carlopecoraro2
★ 2.5k
2
votes
0
replies
120
views
News:
Online Course Introduction to Network Analysis and Modelling
Python
Network-Analysis
updated 13 days ago by
Ram
43k • written 14 days ago by
Transmitting Science communication
▴ 70
2
votes
0
replies
121
views
News:
Online Course Generalised Additive Mixed Models (GAMM): modelling space-time correlation structures
GAMM
Rlang
Rstats
Rproject
updated 13 days ago by
Ram
43k • written 14 days ago by
Transmitting Science communication
▴ 70
2
votes
0
replies
112
views
News:
Course Functional Programming with R
Rstats
TScourses
Rproject
KeepLearning
Rlang
15 days ago by
Transmitting Science communication
▴ 70
1
vote
0
replies
172
views
News:
Landscape Genomics course in Switzerland
LFMM
Landscape-Genomics
Sambada
R
Local-Adaptation
updated 16 days ago by
Ram
43k • written 19 days ago by
carlopecoraro2
★ 2.5k
1
vote
0
replies
127
views
News:
Online Live Course: Introduction to Machine Learning in R
Rstats
TScourses
Rlang
Rproject
updated 13 days ago by
Ram
43k • written 14 days ago by
Transmitting Science communication
▴ 70
0
votes
0
replies
127
views
News:
upcoming online statistical courses
Statistics
R
Data-Analysis
updated 3 days ago by
Ram
43k • written 4 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
171
views
News:
Final Call - Bioinformatics Pipeline Development with Nextflow (May 27-29, 2024)
workshop
RNA-seq
nextflow
DNA-seq
updated 8 days ago by
Ram
43k • written 9 days ago by
David Langenberger
11k
0
votes
0
replies
176
views
News:
Online course: Network Analysis in R
NetworkAnalyis
R
11 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
141
views
News:
Online course: Food Traceability Using Genomic Tools
Nanopore
Genomic-Tools
Illumina
Food-Traceability
updated 21 days ago by
Ram
43k • written 22 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
162
views
News:
Online course: Analysis of Prokaryotic Pangenomes (Last call)
Prokaryotic
Bacterial-Genomics
Pangenomics
updated 27 days ago by
Ram
43k • written 27 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
199
views
News:
Online course: Reproducibility in Bioinformatics
Singularity
Version-Control
Docker
Containers
updated 27 days ago by
Ram
43k • written 27 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
144
views
News:
Online course: Eukaryotic Metabarcoding
Metabarcoding
Biodiversity
R
eDNA
23 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
171
views
News:
Course - Agent-Based Modelling Using NetLogo - University of Lodz, Poland
Netlogo
Individual-Based-Models
Agent-Based-Models
updated 6 days ago by
Ram
43k • written 7 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
83
views
News:
hands-on introduction to generalized linear models (GLMs) using R
Generalized-Linear-Models
GLM
R
updated 18 hours ago by
Ram
43k • written 1 day ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
186
views
News:
Online course: Meta-analysis in R
Meta-Analysis
Statistics
R
updated 6 days ago by
Ram
43k • written 7 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
77
views
News:
8th Berlin Summer School in NGS Data Analysis - Apply Now
variantcalling
DNAseq
illumina
RNAseq
transcriptomics
23 hours ago by
David Langenberger
11k
0
votes
0
replies
141
views
News:
Deadline Approaching: PETs for Public Health Challenge
privacy
public-health-challenge
updated 9 days ago by
Ram
43k • written 9 days ago by
polarise
▴ 380
0
votes
0
replies
117
views
News:
Online course: Multivariate Data Analysis with R and vegan
Multivariate-Statistics
vegan
R
updated 16 days ago by
Ram
43k • written 17 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
181
views
News:
Online course: Meta-analysis in R
Meta-Analysis
R
updated 13 days ago by
Ram
43k • written 13 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
78
views
News:
Online course: DNA methylation
Pacbio
Nanopore
DnaMethylation
Evolution
3 days ago by
carlopecoraro2
★ 2.5k
25 results • Page
1 of 1
Recent Votes
Comment: SRA to BAM
Answer: What Is A "Spot" In Sra Format
Comment: Why gatk VariantAnnotator required bam and coverage files
Comment: Why gatk VariantAnnotator required bam and coverage files
discoSnp - reference-free finding of isolated SNPs from non assembled reads
Comment: Figures are disappeared from html report of SnpEff
Answer: Figures are disappeared from html report of SnpEff
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Recent Awards •
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Popular Question
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William
★ 5.3k
Scholar
to
Adrian Altenhoff
★ 1.1k
Popular Question
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maxime.policarpo
▴ 200
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Hamtaro
▴ 50
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11k
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★ 1.8k
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• 0
Recent Replies
Comment: Why gatk VariantAnnotator required bam and coverage files
by
QX
• 0
I think the coverage could also computed from bam file itself, but let say I do not include the coverage, do you have any idea why it needs…
Comment: Is it possible to get a list of representative genomes from a past RefSeq releas
by
GenoMax
141k
I am moving my answer to a comment. At this point you should email NCBI help desk and ask them this question. If you get an answer then ple…
Comment: Figures are disappeared from html report of SnpEff
by
Pierre Lindenbaum
161k
the javascript in your html is deprecated or your firefox is just tool old.
Comment: Why gatk VariantAnnotator required bam and coverage files
by
Pierre Lindenbaum
161k
> I would like to ask why they may require the bam file for this function? hum.. if you want to add the coverage, where do you think gatk …
Comment: Figures are disappeared from html report of SnpEff
by
analyst
▴ 30
By following above approach I got this ![enter image description here][1] [1]: /media/images/b47490eb-d4c4-4f39-a7b2-f5b7b6b8
Comment: Highest variable features in single cell data
by
Kazo
• 0
I apologize for the confusion. What I meant to say is that, for example, the Trbv17 gene appears among the variable genes. However, when I …
Answer: why renaming Idents in Seurat object doesn't work?
by
Assa Yeroslaviz
★ 1.8k
I manage to find a workwround, but I don't understand what I did wrong here. my solution was to extract the cluster column as vector and…
Answer: Finding orthologs between genome error
by
Adrian Altenhoff
★ 1.1k
Hi, thanks for letting us know. In a recent software update, we introduced a problem with the written splice information in the cached …
Comment: Fetch table from clinvar database according to a list of rsid
by
ashaneev07
▴ 20
so which one should i prefer? i don't need the entire results i need the condition-Germline table only. (for eg:-from, https://www.ncbi.nlm…
Comment: To get p-values for the TPM
by
dsull
★ 5.8k
OK, not sure why your intention is to use RSEM p-values for, but at least tell us the commands you ran then otherwise how are we supposed t…
Comment: Fetch table from clinvar database according to a list of rsid
by
Pierre Lindenbaum
161k
> Don't forget to follow up on your threads. If an answer was helpful, you should upvote it; if the answer resolved your question, you shou…
Comment: different FeatureCounts output for the same data
by
sehriban.buyukkilic
▴ 10
Sure, I'll inquire about the version of Rsubread. I'll keep you posted if it works :) Thanks
Comment: different FeatureCounts output for the same data
by
sehriban.buyukkilic
▴ 10
Yeah, let me show you my featureCounts result, it looks like this. It's too low. [1]: /media/images/eb8293fe-e6ae-4b02-92e2-0ba2075b
Comment: Adding CB tag to bam file
by
Pierre Lindenbaum
161k
samtools addreplacerg is for read groups. This is not what OP asked.
Comment: Adding CB tag to bam file
by
Maria
• 0
When I try ``` samtools addreplacerg -r "@CB\tID:$cell" -o $cell.bam $LINE``` the CB tag gets add to the header, but the tag in every line …
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