19 days ago by
PeterC_NCBI
▴
330
4
votes
2
replies
252
views
3
votes
5
replies
855
views
updated 12 days ago by
alejandrogzi
▴
30
•
written 10 months ago by
dlaehnemann
▴
30
2
votes
1
reply
206
views
updated 22 hours ago by
chrchang523
10k
•
written 3 days ago by
PeterC_NCBI
▴
330
1
vote
0
replies
160
views
0
votes
1
reply
173
views
0
votes
0
replies
131
views
updated 6 days ago by
Ram
40k
•
written 6 days ago by
carlopecoraro2
★
2.3k
0
votes
0
replies
134
views
updated 6 days ago by
Ram
40k
•
written 7 days ago by
carlopecoraro2
★
2.3k
0
votes
0
replies
108
views
updated 13 days ago by
GenoMax
134k
•
written 13 days ago by
sriv.reetesh
•
0
0
votes
0
replies
139
views
updated 20 days ago by
Ram
40k
•
written 20 days ago by
carlopecoraro2
★
2.3k
0
votes
0
replies
130
views
News:
Course on Phylogenomics
updated 24 days ago by
Ram
40k
•
written 25 days ago by
carlopecoraro2
★
2.3k
0
votes
0
replies
136
views
News:
Course - GLMMs in R
updated 6 days ago by
Ram
40k
•
written 7 days ago by
carlopecoraro2
★
2.3k
0
votes
1
reply
189
views
0
votes
2
replies
562
views
updated 6 days ago by
Dave Carlson
★
1.4k
•
written 6 days ago by
oliverhooker
▴
110
0
votes
0
replies
125
views
20 days ago by
carlopecoraro2
★
2.3k
0
votes
0
replies
194
views
0
votes
0
replies
116
views
13 days ago by
carlopecoraro2
★
2.3k
0
votes
0
replies
129
views
12 days ago by
PeterC_NCBI
▴
330
0
votes
0
replies
119
views
8 days ago by
carlopecoraro2
★
2.3k
0
votes
0
replies
163
views
29 days ago by
carlopecoraro2
★
2.3k
0
votes
0
replies
156
views
updated 4 days ago by
Ram
40k
•
written 4 days ago by
David Langenberger
10k
0
votes
0
replies
135
views
7 days ago by
carlopecoraro2
★
2.3k
0
votes
0
replies
78
views
1 day ago by
carlopecoraro2
★
2.3k
0
votes
0
replies
247
views
updated 24 days ago by
Ram
40k
•
written 25 days ago by
carlopecoraro2
★
2.3k
0
votes
0
replies
142
views
15 days ago by
carlopecoraro2
★
2.3k
0
votes
0
replies
128
views
0
votes
0
replies
151
views
Recent Votes
Recent Locations •
All
Galway, Ireland, 1 minute ago
Bethesda, MD, 1 minute ago
Japan, 1 minute ago
United States, 2 minutes ago
EUA, 2 minutes ago
United States, 4 minutes ago
United States, 4 minutes ago
Recent Awards •
All
Popular Question to
adeizadavid
▴
10
Popular Question to
dec986
▴
370
Popular Question to
arriyaz.nstu
▴
30
Popular Question to
gyspace
•
0
Popular Question to
amy__
▴
150
Recent Replies
Comment: Should I Learn Docker to Run Command Line Bioinformatics Tool?
by
ATpoint
76k
Never tried, so idk. Why wouldn't it support it?
Comment: Should I Learn Docker to Run Command Line Bioinformatics Tool?
by
ATpoint
76k
I never tried conda images but since `mamba > conda` I guess mambaforge is better.
Comment: Filter human transcription factors
by
Chris
▴
180
Yes, I do GO and GSEA to get pathway. I download the background gene at https://www.gsea-msigdb.org/gsea/msigdb/human/collections.jsp#C3 Th…
Answer: Visualize where kmers are on a reference genome
by
Alex Reynolds
35k
Make a bigBed file: https://www.biostars.org/p/9546293/
Then view it on the UCSC Genome Browser: http://genome.ucsc.edu/goldenPath/help/…
Comment: Integrated Seurat object change name of the two conditions
by
camillab.
▴
130
great! thank you very much!
Answer: Filter transcription factors
by
jared.andrews07
★
15k
[This database](http://humantfs.ccbr.utoronto.ca/download.php) has been the best I've found.
Comment: Filter transcription factors
by
Ram
40k
What have you tried? Have you looked at GO annotations?
Comment: how to identify uniq genes between two gff files.
by
nikhil
▴
10
yes @juke34 , I tried agat_sp_compare_two_annotations.pl for both gff files and got comparative output in table format.
Thank you very muc…
Comment: Integrated Seurat object change name of the two conditions
by
Amitm
★
2.2k
Yes, its similar structure. This snippet should add a new metadata column "sample.New" with what you want to do
# Assuming a seurat obj. c…
Comment: Low Alignment rate
by
biofalconch
▴
970
Yeap, you can sample your reads with `seqtk` like this:
seqtk sample -s100 read2.fq 100 > Sample.fq
Take a couple and run them throug…
Answer: obtaining circular RNAs' sequences from circBase
by
Barry Digby
★
1.2k
You won't find them on circBase.
circAtlas has the mature spliced sequence available. You can [search for circRNAs](https://ngdc.cncb.a…
Comment: Should I Learn Docker to Run Command Line Bioinformatics Tool?
by
Ram
40k
\#TIL mambaforge - better than continuum's conda images I'm guessing?
Comment: Should I Learn Docker to Run Command Line Bioinformatics Tool?
by
arriyaz.nstu
▴
30
If the laptop doesn't support WSL2, then will the Docker (with linux) work?
Comment: Integrated Seurat object change name of the two conditions
by
camillab.
▴
130
thanks but my metadata looks different from yours. Will it work even there are not the same "structure"?
or…
Traffic: 4318 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6