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108k
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100 follow
News: The Biostar Handbook. A bioinformatics e-book for beginners.
training handbook
updated 9 days ago by 1.6k • written 6.3 years ago by 97k
32
votes
6
replies
12k
views
7 follow
News: Ncbi Releases Entrez Direct, The Entrez Utilities On The Unix Command Line
ncbi genbank pubmed command-line entrez
updated 21 days ago by 38k • written 9.1 years ago by 153k
17
votes
6
replies
8.4k
views
News: Final registration deadline: September 15th - Bioinformatics Hands-On NGS Data Analysis Workshops 2014
methylation RNA-seq
updated 17 days ago by 38k • written 9.0 years ago by 9.9k
9
votes
5
replies
8.2k
views
News: A New Rest Based Api For Kegg: Kyoto Encyclopedia Of Genes And Genomes
kegg api
updated 29 days ago by 38k • written 10.3 years ago by ▴ 50
15
votes
18
replies
7.3k
views
6 follow
News: New Free Community Tutorial Website For Bioinformatics Learning
ChIP-seq genome snp RNA-seq
updated 24 days ago by 38k • written 9.7 years ago by ▴ 610
21
votes
7
replies
7.1k
views
News: Survey: Rna-Seq Analysis For Differential Gene/Transcript Expression [Updated With Results]
transcript RNA-seq gene
updated 29 days ago by 38k • written 10.3 years ago by ▴ 250
12
votes
8
replies
6.4k
views
News: rRNA Depletion / Poly-A Selection Responsible for RNA-seq Bias
rRNA-depletion RNA-seq-bias
updated 17 days ago by 38k • written 8.7 years ago by ▴ 640
15
votes
3
replies
6.4k
views
News: Top Bioinformatics Contributions Of 2013
bioinformatics
updated 22 days ago by 38k • written 9.3 years ago by ★ 1.1k
31
votes
4
replies
6.1k
views
News: Rosalind: A Novel Bioinformatics Education Platform
education
updated 29 days ago by 38k • written 10.5 years ago by ▴ 310
25
votes
7
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5.8k
views
News: Pubmed Commons : A System That Enables Researchers To Share Their Opinions About Scientific Publications
ncbi pubmed
updated 23 days ago by 38k • written 9.4 years ago by 153k
45
votes
19
replies
5.6k
views
8 follow
News: Gamestorming For Bioinformatics
gamestorming
updated 29 days ago by 38k • written 10.5 years ago by 27k
6
votes
0
replies
5.0k
views
News: Game Changer? Illumina Nextseq 500
illumina
updated 21 days ago by 38k • written 9.2 years ago by ★ 1.3k
6
votes
7
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4.8k
views
News: Illumina Nextseq 500 And Hiseq X Ten: Newer Tech Lowering Cost Per Mbp
Illumina
updated 21 days ago by 38k • written 9.2 years ago by ▴ 640
2
votes
0
replies
4.7k
views
News: LAST CALL: Two days left to register for our workshop 'RNA-seq Bioinformatics: A Practical Introduction'
RNA-Seq workshop
updated 17 days ago by 38k • written 8.7 years ago by 9.9k
0
votes
0
replies
4.6k
views
News: Bioinformatics Training Courses - Metagenomics and NGS data analysis - Sydney and Canberra, Australia
metagenomics training next-gen-sequencing
updated 17 days ago by 38k • written 8.8 years ago by 49k
7
votes
3
replies
4.2k
views
News: Pathway Commons 2 - Search And Visualize Public Biological Pathway Information. Single Point Of Access.
api cytoscape
updated 22 days ago by 38k • written 9.3 years ago by ★ 1.2k
3
votes
0
replies
4.2k
views
News: Free Online Harvardx Course, Data Analysis For Genomics, Starts April 7
methylation bioconductor ChIP-seq RNA-seq R
updated 17 days ago by 38k • written 9.0 years ago by ★ 2.2k
24
votes
7
replies
4.0k
views
News: #Bioinformatics Crowdcoding
crowd-coding
updated 24 days ago by 38k • written 9.7 years ago by 153k
1
vote
0
replies
4.0k
views
News: Hands-On Training in RNA-seq Bioinformatics: A Practical Introduction - Mapping, Visualization, Basic Analyses
next-gen RNA-Seq workshop
updated 17 days ago by 38k • written 8.8 years ago by 9.9k
23
votes
7
replies
4.0k
views
News: Research accounts on GitHub
github git
updated 17 days ago by 38k • written 8.9 years ago by 153k
8
votes
6
replies
3.7k
views
News: Last Call: Upcoming Workshop - Rna-Seq Bioinformatics: A Practical Introduction
RNA-seq
updated 28 days ago by 38k • written 10.2 years ago by 9.9k
6
votes
9
replies
3.6k
views
News: 1000 Genomes : The Initial Phase 3 variant list and phased genotypes.
1000genomes
updated 17 days ago by 38k • written 8.8 years ago by 153k
3
votes
2
replies
3.5k
views
News: Course/Workshop: Informatics For Rna-Sequence Analysis (June, 2013)
RNA-seq
updated 28 days ago by 38k • written 10.2 years ago by 20k
0
votes
0
replies
3.5k
views
News: Journal Of Bioinformatics Research Studies- Call For Papers
publication biology
updated 17 days ago by 38k • written 9.0 years ago by • 0
11
votes
2
replies
3.4k
views
News: Coursera: Computational Molecular Evolution
course
updated 27 days ago by 38k • written 9.8 years ago by 153k
5
votes
2
replies
3.4k
views
News: Tuesday 10/29 Live Tour Of New Features In Integrated Genome Browser 8
genome-browser RNA-seq ChIP-seq
updated 23 days ago by 38k • written 9.4 years ago by ★ 2.3k
6
votes
1
reply
3.4k
views
News: Symposium And Rna-Seq Data Analysis Workshop Charlotte May 13-14
RNA RNA-seq training
updated 17 days ago by 38k • written 9.0 years ago by ★ 2.3k
9
votes
4
replies
3.4k
views
News: Conference Announcement - Camda 2013
conference classification
updated 28 days ago by 38k • written 10.2 years ago by ▴ 240
5
votes
1
reply
3.3k
views
News: Broad Gatk Haplotypecaller Speed Improved 2-4 X By Cooperation With Intel, And Incremental Multi-Sample Calling Made Possible!
gatk variant-calling
updated 18 days ago by 38k • written 9.0 years ago by ★ 5.2k
12
votes
7
replies
3.3k
views
News: Welcome Ensembl REST with more endpoints!
ensembl rest-api
updated 15 days ago by 38k • written 8.4 years ago by ★ 5.2k
2
votes
0
replies
3.3k
views
News: Bioinformatics Open Days 2Nd Edition - 14 And 15 Of March, 2013 At The University Of Minho, Campus Gualtar, Braga, Portugal.
conference
updated 28 days ago by 38k • written 10.2 years ago by ▴ 20
17
votes
9
replies
3.2k
views
News: My Ncbi Curriculum Vitae Web Application: Sciencv
ncbi
updated 23 days ago by 38k • written 9.5 years ago by 153k
5
votes
2
replies
3.2k
views
News: Summary of AGBT 2015
AGBT2015 AGBT
updated 7 days ago by 38k • written 8.1 years ago by ▴ 640
8
votes
1
reply
3.1k
views
News: LAST DAY TO REGISTER - NGS Workshop 2015: A Practical Introduction to NGS Data Analysis (Oxford, UK)
RNA-Seq workshop
updated 15 days ago by 38k • written 8.4 years ago by 9.9k
11
votes
0
replies
3.1k
views
News: BWA 0.7.11 is out, supports ALT contigs
BWA
updated 10 days ago by 38k • written 8.3 years ago by 103k
2
votes
0
replies
3.1k
views
News: Promoter Design Challenge: Design A Plant Promoter And We Will Construct It.
plant-promoter transcription-factor
updated 28 days ago by 38k • written 10.1 years ago by ▴ 20
12
votes
0
replies
3.1k
views
News: Looking For Feedback On The Json Output For Ncbi E-Utilities
ncbi eutils
updated 29 days ago by 38k • written 10.3 years ago by ▴ 360
9
votes
3
replies
3.0k
views
News: New Human Genome Assembly (Grch38) Released
human-genome assembly
updated 22 days ago by 38k • written 9.2 years ago by 153k
0
votes
0
replies
3.0k
views
News: sRNAbench: profiling of small RNAs and its sequence variants in single or multi-species high-throughput experiments
webserver isomiRs microRNA small-RNA
updated 15 days ago by 38k • written 8.4 years ago by 9.9k
2
votes
0
replies
3.0k
views
News: Short Course And Workshop On Rna-Seq Analysis
RNA-seq
updated 21 days ago by 38k • written 9.2 years ago by ▴ 60
3
votes
0
replies
3.0k
views
News: Tumorportal - A Tool For Exploring A Pan-Cancer Dataset
tcga cancer-genomics
updated 21 days ago by 38k • written 9.1 years ago by 19k
12
votes
8
replies
3.0k
views
News: 'Potential Rna-Dna Binding Site In Alu Repeat', Or 'Why Should I Allow Multiple Mapping Positions When Analyzing Chipseq Data?'
chipseq rna
updated 24 days ago by 38k • written 9.7 years ago by 9.9k
7
votes
1
reply
2.9k
views
News: A Multi-Split Mapping Algorithm For Circular Rna, Splicing, Trans-Splicing, And Fusion Detection
ngs mapping
updated 21 days ago by 38k • written 9.1 years ago by 9.9k
10
votes
1
reply
2.9k
views
News: Ucsc: Dna Sequences In Web Pages Indexed By Bing.Com / Microsoft Research (All Phenotype And Literature Tracks)
web ucsc
updated 21 days ago by 38k • written 9.2 years ago by 153k
5
votes
0
replies
2.8k
views
News: Penn State now offers an Online Graduate Certificate: Applied Bioinformatics
bioinformatics-education
updated 15 days ago by 38k • written 8.6 years ago by 97k
3
votes
2
replies
2.8k
views
News: Bioinformatics On Windows And Windows Cloud
windows cloud
updated 29 days ago by 38k • written 10.4 years ago by ▴ 20
2
votes
3
replies
2.8k
views
News: Summer Course On Analyzing Next-Generation Sequencing Data, June 10-20, Kellog Biological Station, Michigan State University
education
updated 28 days ago by 38k • written 10.1 years ago by 97k
10
votes
0
replies
2.8k
views
News: Cfp: Camda 2013 Challenge: Big Data In Life Sciences
ngs conference
updated 28 days ago by 38k • written 10.0 years ago by ▴ 240
4
votes
0
replies
2.7k
views
News: Wed 9/25 On-Line, Live Tutorial For Integrated Genome Browser
visualization ChIP-seq RNA-seq igv genome-browser
updated 24 days ago by 38k • written 9.5 years ago by ★ 2.3k
22
votes
3
replies
2.7k
views
News: Biostar: 10,000 Question Milestone
meta
updated 27 days ago by 38k • written 9.8 years ago by 97k
159 results • Page 1 of 4
Recent Votes
A: What Makes One Probability Distribution Better For Rna-Seq Than Another?
Answer: How to demultiplex single end - dual index run - NextSeq 500
How to calculate Exon-Intron junction perbase coverage?
Comment: how to get to a VCF from bam files
Answer: Snakemake error to build synteny from BUSCO .tsv
How to find promoter sequence of a gene?
Answer: How to demultiplex single end - dual index run - NextSeq 500
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Recent Replies
Comment: Python formatting when visualizing Primer3-py dimers by Wayne ★ 1.6k
Starting to understand what you want and why. How do you want the name, like 'test1' stuff, handled in this or no names? More importantly…
Comment: Python formatting when visualizing Primer3-py dimers by bhumm ▴ 30
Hi Wayne, Thanks for the response. I have updated the code to be more representative of the toy example I have provided - apologies for an…
Comment: chloroplast genome gaps by Pierre Lindenbaum 153k
> , but the alignment results show different size gaps. what does it mean ?
Comment: lncTar by Ram 38k
I see that you added an answer to a 2 year old post. Don't do that - what you added was "I have this problem too" comment, not an answer. I…
Comment: LncTar error by Ram 38k
Do not add answers unless you're answering the top level question. Given that you've opened a new question, I'm deleting this post.
Comment: Samtools fixmate: whta's wrong with the terminal? by Ram 38k
Lol I started writing first, then discovered each issue as I was writing. All I saw was the `-0` but then oh my goodness, so many problems!
Comment: SKAT in R by Pierre Lindenbaum 153k
cross-posted: https://bioinformatics.stackexchange.com/questions/20772
Comment: Samtools fixmate: whta's wrong with the terminal? by Pierre Lindenbaum 153k
oh , Ram was too fast ! :-D
Answer: Samtools fixmate: whta's wrong with the terminal? by Pierre Lindenbaum 153k
1) your [standard][1] output is redirected to the terminal instead of a [file][2]. 2) there is no such option `-0` (zero) . your want …
Answer: multiallelic variants by raphael.B ▴ 290
you can use bcftools norm on your vcf to split multiallelic records prior to merging
Answer: Samtools fixmate: whta's wrong with the terminal? by Ram 38k
The output format parameter is `-O`, not `-0`. Also, there's a `-` before the `path/` which makes samtools thing `ath/file_fixmated.bam` is…
Comment: lncTar by Ram 38k
> Zea maize Is that a typo or a pun on *Zea mays* being maize?
Comment: How to demultiplex single end - dual index run - NextSeq 500 by Apex92 ▴ 260
Thank you for your input it was helpful.
Comment: normalized score for SpatialFeaturePlot by jv ★ 1.0k
not sure that this is the issue, but are you sure that `SpatialFeaturePlot` is pulling from the SCT assay in each case? Another way to ask …
Comment: Python formatting when visualizing Primer3-py dimers by Wayne ★ 1.6k
You should include all your code to produce your toy example so that others can pick up with what you have worked. And then more likely you…
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