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News:
You may need to cleanup duplicate NCBI BLAST nt database volumes on your system
databases
NCBI
BLAST
26 days ago by
PeterC_NCBI
▴ 320
4
votes
2
replies
232
views
News:
Standalone NCBI ClusteredNR database now available for download
ClusteredNR
NCBI
standalone
BLAST
15 days ago by
PeterC_NCBI
▴ 320
3
votes
5
replies
839
views
News:
Ensembl Release 104 and newer GTF files no longer have genes sorted by position
Ensembl
GTF
updated 8 days ago by
alejandrogzi
▴ 30 • written 10 months ago by
dlaehnemann
▴ 30
2
votes
2
replies
283
views
News:
NCBI BLAST+ 2.14.1 Now Available
NCBI
BLAST
26 days ago by
PeterC_NCBI
▴ 320
1
vote
0
replies
135
views
News:
Course - Introduction to CRISPR
CRISPR
Evolution
GenomeEditing
29 days ago by
carlopecoraro2
★ 2.3k
0
votes
0
replies
122
views
News:
Introduction to Nextflow (2 seats left)
Nextflow
Workflow
Reproducibility
updated 2 days ago by
Ram
40k • written 2 days ago by
carlopecoraro2
★ 2.3k
0
votes
0
replies
117
views
News:
Course - Reproducibility Data Analysis with R
R
renv
VersionControl
Reproducibility
16 days ago by
carlopecoraro2
★ 2.3k
0
votes
0
replies
118
views
News:
Genomic Prediction course
Bioinformatics
GWAS
GenomicPrediction
3 days ago by
carlopecoraro2
★ 2.3k
0
votes
0
replies
121
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News:
Course on Phylogenomics
Phylogenetic-Inference
Divergence-Time-Estimation
Genomics
Phylogenomics
updated 20 days ago by
Ram
40k • written 21 days ago by
carlopecoraro2
★ 2.3k
0
votes
2
replies
531
views
News:
The Practice of RADseq: Population Genomics Analysis with Stacks (RADS02) Early bird deadline approaching - 20th September
population-genomics
radseq
stacks
updated 1 day ago by
Dave Carlson
★ 1.4k • written 2 days ago by
oliverhooker
▴ 110
0
votes
0
replies
102
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News:
course - Population Genomics Using Ancient DNA Data
Bioinformatics
PopulationGenomics
Genomics
aDNA
3 days ago by
carlopecoraro2
★ 2.3k
0
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0
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121
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News:
Online Course - A Practical Introduction to NGS Data Analysis - October 23-25, 2023
DNA-seq
RNA-seq
Workshop
updated 1 day ago by
Ram
40k • written 2 days ago by
David Langenberger
10k
0
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0
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12
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News:
Workshop - Single-Cell RNA-Seq Data Analysis: A Practical Introduction (November 8-10, 2023 in Berlin)
single
RNA-Seq
scRNA-Seq
cell
workshop
1 hour ago by
David Langenberger
10k
0
votes
0
replies
118
views
News:
NCBI ClinVar XML update to accomodate somatic variants
SNP
NCBI
XML
ClinVar
8 days ago by
PeterC_NCBI
▴ 320
0
votes
0
replies
151
views
News:
Upcoming Learning Opportunities and Important Updates
R
Programming
aDNA
Paleogenomics
29 days ago by
carlopecoraro2
★ 2.3k
0
votes
0
replies
106
views
News:
RNAseq data analysis with R/Bioconductor
R
RNAseq
Bioconductor
9 days ago by
carlopecoraro2
★ 2.3k
0
votes
0
replies
134
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News:
Course - RNAseq in non-model organisms
R
RNAseq
DifferentialExpressionAnalysis
Bioconductor
11 days ago by
carlopecoraro2
★ 2.3k
0
votes
0
replies
153
views
News:
Course. -Multivariate Data Analysis with R and vegan
R
vegan
MultivariateDataAnalysis
25 days ago by
carlopecoraro2
★ 2.3k
0
votes
0
replies
122
views
News:
Virtual Variant Detection Workshop: September 11-14, 2023
tutorial
detection
genomics
workshop
variant
15 days ago by
mia.nahom
▴ 10
0
votes
0
replies
105
views
News:
Course: Data Manipulation and Visualisation with Python
Python
Data-Visualization
Data-Manipulation
updated 1 day ago by
Ram
40k • written 1 day ago by
carlopecoraro2
★ 2.3k
0
votes
0
replies
122
views
News:
Course - GLMMs in R
GLMM
Mixed-Models
updated 2 days ago by
Ram
40k • written 2 days ago by
carlopecoraro2
★ 2.3k
0
votes
0
replies
231
views
News:
Join Our Online Course: Incorporating Paleogenomes into Evolutionary Genomics Studies
Paleogenomics
Genomics
aDNA
Adaptation-Genomics
updated 20 days ago by
Ram
40k • written 20 days ago by
carlopecoraro2
★ 2.3k
0
votes
0
replies
130
views
News:
Introduction to Deep Learning for Biologists course
Python
Deep-Learning
Machine-Learning
updated 15 days ago by
Ram
40k • written 16 days ago by
carlopecoraro2
★ 2.3k
0
votes
0
replies
99
views
News:
Workshop on Virtual Screening on Drug Discovery from scratch (15-16 September, 2023 : 07.00 - 09.00 PM IST)
bioinformatics
screening
virtual
updated 8 days ago by
GenoMax
134k • written 9 days ago by
sriv.reetesh
• 0
0
votes
0
replies
185
views
News:
Online course: Easily analyze single cell RNA-seq data with Cellenics®, a user-friendly web-based platform
scRNA-seq
training
single-cell-RNA-seq
updated 19 days ago by
Ram
40k • written 20 days ago by
Sara
• 0
0
votes
0
replies
35
views
News:
Research Breakthrough in Identifying Viral Escape Mutations for Improved Therapeutic Design
sars-cov-2
spikePprotein
computationalApproach
escapeMutations
sequenceAanalysis
4 hours ago by
Prem
• 0
26 results • Page
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Recent Votes
C: bowtie2 piped to samtools created many samtools.tmp.bam files, how to get the si
What is the difference between norm --multiallelics -any versus --atomize?
Answer: What is the difference between norm --multiallelics -any versus --atomize?
A: How To Extract A Sequence From A Big (6Gb) Multifasta File ?
A: How to extract a sequence below a fasta header (">") from a fasta file ?
A: How to extract a sequence below a fasta header (">") from a fasta file ?
A: How To Extract A Sequence From A Big (6Gb) Multifasta File ?
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Comment: Uniprot Database for download
by
Elisabeth Gasteiger
★ 2.2k
> This is the entry for your example accession: https://www.uniprot.org/uniprotkb?query=proteome%3AUP000005640+AND+C9J7I0 I would recommen…
Answer: Identifying common DEGs among multiple datasets
by
Barry Digby
★ 1.2k
Return a vector of common DEGs ```R dataset1 <- read.csv("dataset1.csv", header=T) dataset2 <- read.csv("dataset2.csv", header=T) h…
Comment: Dealing with transcriptome sequences that are smaller than their respective gene
by
langziv
▴ 50
If it's difficult to tell from RNA-seq data, what other approaches I should use?
Comment: Dealing with transcriptome sequences that are smaller than their respective gene
by
langziv
▴ 50
I modified the question so that instead of genes the question refers to CDSs.
Comment: Dealing with transcriptome sequences that are smaller than their respective gene
by
langziv
▴ 50
Thanks. Is there an approach or a guideline to filter such sequences?
Answer: Assistance with Fungal Genome Annotation Using Maker and BLAST
by
Juke34
8.2k
There are tools to combine output from blast in tabulated format like in the example here [enter link description here][1](see functional …
Answer: Importance of Data Structures for Bioinformatics?
by
xiaoguang
▴ 120
Bioinformatics is a cross-disciplinary research subject and learning anything is a plus for future participation in related jobs. But right…
Answer: How to find positions with higher depth relative to their surroundings
by
xiaoguang
▴ 120
I saw you want to get regions that have significantly higher depth than their surroundings; you must get a p-value to show significant as w…
Comment: how to calculate BAF and LRR from VCF or BCF files?
by
xiaoguang
▴ 120
Hi, The ASCAT new version has introduced a new function called `ascat.prepareHTS`, which can be used to prepare all files that are required…
Comment: GERP++ (gerpcol) error on a test data
by
Diana
• 0
I solved the problem in the end. I was under the impression that the reference sequence had to be provided in a separate fasta file: c…
Answer: How to find positions with higher depth relative to their surroundings
by
d-cameron
★ 2.9k
The usual way of doing this is to use one of the many existing copy number variant caller. Doing this yourself is both a) complicated to do…
Answer: How to retrieve LoF and missense variants in WES data?
by
luffy
▴ 30
@ _quantum_girl_, as Pierre mentioned, you can annotate your VCF with [snpEff][1] or [ensembl vep][2] once you annotated you could filter n…
Comment: Adding a control sample to bulk RNA-seq
by
Chris
▴ 180
Thank you so much! It is from the same lab but from another project. Would you please explain about combining the counts together a little …
Answer: Importance of Data Structures for Bioinformatics?
by
d-cameron
★ 2.9k
> how important are Data Structures to multi-omic / bioinformatic analysis Generally speaking, they're not critical if you are using an …
Answer: Recommended order of operations for identifying the genomic location and copy-nu
by
dk0319
▴ 70
Update: The above workflow was successful, in that contig_1719 does contain approximately 4 copies of my insert based on searching pieces o…
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