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16 results • Page
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News:
Online course: Introduction to GWAS
GWAS
Imputation
StatisticalPower
4 days ago by
carlopecoraro2
★ 2.4k
0
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0
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118
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News:
Online course: Adaptation Genomics
StructuralVariants
Selection
AdaptationGenomics
PopulationStructure
9 days ago by
carlopecoraro2
★ 2.4k
0
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0
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110
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News:
Online course: Analysis of Prokaryotic Pangenomes
BacterialGenomics
Pangenomics
9 days ago by
carlopecoraro2
★ 2.4k
0
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0
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191
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News:
Online course on Genome Assembly and Annotation (1 seat left)
Galaxy
GenomeAssembly
GenomeAnnotation
13 days ago by
carlopecoraro2
★ 2.4k
1
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133
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News:
NCBI's ClinVar now accepting somatic variation data
variation
NCBI
somatic-variants
ClinVar
13 days ago by
PeterC_NCBI
▴ 410
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231
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News:
EMBL Course Hands-on course for sample preparation and data analysis in proteomics
EMBLProteomics
updated 14 days ago by
dr.eldeib89
• 0 • written 7 weeks ago by
EMBL Events
▴ 10
1
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146
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News:
Learn how to create robust bioinformatics pipelines for reproducible and comparable NGS analyses
nextflow
pipeline
workshop
16 days ago by
David Langenberger
11k
8
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1
reply
241
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News:
Registration OPEN: 8th Berlin Summer School in NGS Data Analysis (June 10-14, 2024)
Workshop
DNA-Seq
RNA-Seq
Illumina
updated 16 days ago by
JohnBlue81
▴ 500 • written 21 days ago by
David Langenberger
11k
0
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0
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119
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News:
Online course: Genome Assembly and Annotation - 3 seats left
Genome-Assembly
Galaxy
Genome-Annotation
updated 16 days ago by
Ram
43k • written 17 days ago by
carlopecoraro2
★ 2.4k
0
votes
0
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115
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News:
Call for abstract: Quest for Orthologs meeting in Montreal
conference
phylogeny
comparativegenomics
orthology
evolution
18 days ago by
sina.majidian
▴ 20
8
votes
2
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559
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News:
LAST CALL - Single-Cell RNA-Seq Data Analysis: A Practical Introduction (May 6-8, 2024 in Berlin)
single-cell
sequencing
22 days ago by
David Langenberger
11k
1
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0
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130
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News:
shournal: A Tool for Bioinformaticians to Boost Research Reproducibility
reproducability
terminal
bash
23 days ago by
David Langenberger
11k
1
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1
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159
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News:
Integrated Genome Browser (IGB) Office Hours
Integrated-Genome-Browser
IGB
updated 23 days ago by
Ram
43k • written 23 days ago by
IGB Helper
• 0
0
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0
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152
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News:
Online course: Network Analysis in Systems Biology with R/Bioconductor
R
RNA-seq
Network-Analysis
Bioconductor
Systems-Biology
updated 23 days ago by
Ram
43k • written 24 days ago by
carlopecoraro2
★ 2.4k
0
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0
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188
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News:
The 2024 Canadian Bioinformatics Workshops are here!
CBW
workshop
training
27 days ago by
bioinformatics.ca
• 0
0
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0
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148
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News:
Live online course Data Manipulation with R Tidyverse, 3 and 5 of April
R
manipulation
tidyverse
data
29 days ago by
Sole
• 0
16 results • Page
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Recent Votes
Trouble with bedtools getfasta
Gnu Parallel - Parallelize Serial Command Line Programs Without Changing Them
Answer: Hybrid assembly Pacbio- Nanopore
C: Why is 0/0 homozygous reference call in VCF useful information?
Answer: snippy error
Answer: TSS of protein coding genes
TSS of protein coding genes
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Recent Replies
Comment: Volcano Plot Output Inquiry: Graphs Facing Down
by
ATpoint
81k
It's `-log10(pvalue)`, you miss the minus. Some people use indeed pvalue, but since you're filtering on padj, I would show `-log10(padj)` r…
Comment: calculate mismatch rate from VCF file
by
Dora
▴ 10
Thank you for your reply!! My bad. I didn't mention that I want to get the mismatch rate for each site. Is this error rate for each site?
Comment: Interproscan taking so much time
by
dthorbur
★ 1.7k
Parallelize. Chunk your transcriptome into groups of something like 5000 (or less if you want it to go faster), and run an array across you…
Comment: Nanopore data filtering using fastp
by
dthorbur
★ 1.7k
Ah, sorry, I was thinking of the wrong command. You can either use `seqtk sample` or `seqkit sample`. I would recommend the former if your …
Comment: Variant calling of GBS data
by
analyst
▴ 10
It does not output warning when I skip flags for MQRankSum and ReadPosRankSum **java -jar -Xmx30G gatk.jar VariantFiltration -R reference…
Comment: Merging featureCounts output for different species
by
andrebolerbarros
• 0
Is there any list of homology you could use for this merging? Maybe this would be helpful
Comment: Variant calling of GBS data
by
Pierre Lindenbaum
160k
again, remove the spaces " "SOR > 10." -> " "SOR>10"
Comment: Variant calling of GBS data
by
analyst
▴ 10
It is still giving same warning java -jar -Xmx30G gatk.jar VariantFiltration -R reference.fa -V A_raw_snps.vcf -O A_filtered_snps.vcf --fi…
Comment: Nextflow ERROR : Timeout waiting for connection from pool
by
dzisis1986
▴ 70
It doesn't make sense how to change the threads and in my case it is not working! What kind of problem is that ? is it related to Amazon to…
Comment: STAR aligner options
by
theophile
• 0
I have finally found out the reason behind this behavior. As [pointed out by dsull][1], the beginning of the alignment of read1 to the rat…
Comment: Variant calling of GBS data
by
analyst
▴ 10
Right Pierre, thanks.
Comment: Variant calling of GBS data
by
Pierre Lindenbaum
160k
remove spaces in expressions. 'MQRankSum<0.4'
Comment: Variant calling of GBS data
by
analyst
▴ 10
![enter image description here][1] [1]: /media/images/710829f2-e4af-4743-a31d-822520b4
Comment: Variant calling of GBS data
by
analyst
▴ 10
Vcf file contains this information ![enter image description here][1] [1]: /media/images/b3f699e5-2dd9-4e08-8f5b-2a716544
Comment: Variant calling of GBS data
by
analyst
▴ 10
Command used : **java -jar -Xmx30G gatk.jar VariantFiltration -R reference.fa -V A_raw_snps.vcf -O A_filtered_snps.vcf --filter-name "QD_f…
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