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News: FINAL CALL - Single-Cell RNA-Seq Data Analysis: A Practical Introduction (May 6-8, 2024 in Berlin)
single-cell sequencing
14 days ago by David Langenberger 11k
12
votes
2
replies
425
views
News: 8th Berlin Summer School in NGS Data Analysis (June 10-14, 2024) - already half booked
Workshop RNA-Seq DNA-Seq Illumina
9 days ago by David Langenberger 11k
3
votes
2
replies
540
views
News: Announcement: Research Topic "Mechanistic, Machine Learning and Hybrid Models of the 'Other' Endocrine Regulatory Systems in Health and Disease", Vol…
mathematical-modelling endocrinology ML systems-biology machine-learning
21 days ago by Johannes W. Dietrich • 0
0
votes
0
replies
151
views
News: Online course: Introduction to GWAS
GWAS Imputation StatisticalPower
26 days ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
163
views
News: Online course: Network Analysis in R
NetworkAnalyis R
5 days ago by carlopecoraro2 ★ 2.5k
2
votes
0
replies
105
views
News: Course Functional Programming with R
Rstats TScourses Rproject KeepLearning Rlang
9 days ago by Transmitting Science communication ▴ 70
0
votes
0
replies
131
views
News: Online course: Food Traceability Using Genomic Tools
Nanopore Genomic-Tools Illumina Food-Traceability
updated 16 days ago by 43k • written 16 days ago by ★ 2.5k
2
votes
0
replies
109
views
News: Online Course Introduction to Network Analysis and Modelling
Python Network-Analysis
updated 8 days ago by 43k • written 8 days ago by ▴ 70
0
votes
0
replies
130
views
News: Deadline Approaching: PETs for Public Health Challenge
privacy public-health-challenge
updated 4 days ago by 43k • written 4 days ago by ▴ 380
0
votes
0
replies
153
views
News: Course - Agent-Based Modelling Using NetLogo - University of Lodz, Poland
Netlogo Individual-Based-Models Agent-Based-Models
updated 1 day ago by 43k • written 1 day ago by ★ 2.5k
1
vote
0
replies
162
views
News: Landscape Genomics course in Switzerland
LFMM Landscape-Genomics Sambada R Local-Adaptation
updated 11 days ago by 43k • written 13 days ago by ★ 2.5k
0
votes
0
replies
137
views
News: Online course: Eukaryotic Metabarcoding
Metabarcoding Biodiversity R eDNA
18 days ago by carlopecoraro2 ★ 2.5k
1
vote
0
replies
120
views
News: Online Live Course: Introduction to Machine Learning in R
Rstats TScourses Rlang Rproject
updated 8 days ago by 43k • written 8 days ago by ▴ 70
0
votes
0
replies
157
views
News: Final Call - Bioinformatics Pipeline Development with Nextflow (May 27-29, 2024)
workshop RNA-seq nextflow DNA-seq
updated 3 days ago by 43k • written 3 days ago by 11k
0
votes
0
replies
173
views
News: Online course: Meta-analysis in R
Meta-Analysis R
updated 8 days ago by 43k • written 8 days ago by ★ 2.5k
0
votes
0
replies
151
views
News: Online course: Meta-analysis in R
Meta-Analysis Statistics R
updated 1 day ago by 43k • written 1 day ago by ★ 2.5k
2
votes
0
replies
113
views
News: Online Course Generalised Additive Mixed Models (GAMM): modelling space-time correlation structures
GAMM Rlang Rstats Rproject
updated 8 days ago by 43k • written 8 days ago by ▴ 70
0
votes
0
replies
188
views
News: Online course: Reproducibility in Bioinformatics
Singularity Version-Control Docker Containers
updated 22 days ago by 43k • written 22 days ago by ★ 2.5k
2
votes
0
replies
106
views
News: Online course: Genome Annotation
Genome-Assembly RNA-seq Genome-Annotation
updated 10 days ago by 43k • written 10 days ago by ★ 2.5k
0
votes
0
replies
107
views
News: Online course: Multivariate Data Analysis with R and vegan
Multivariate-Statistics vegan R
updated 11 days ago by 43k • written 12 days ago by ★ 2.5k
0
votes
0
replies
155
views
News: Online course: Analysis of Prokaryotic Pangenomes (Last call)
Prokaryotic Bacterial-Genomics Pangenomics
updated 22 days ago by 43k • written 22 days ago by ★ 2.5k
21 results • Page 1 of 1
Recent Votes
Answer: MEGA Analysis Issue on High-Performance Computer
Comment: Ciriquant not configuring hisat2 indexed files
bcftools multiple commands
bcftools pipe generated file from first command with second
C: How to setup a Summarized Experiment
A: How to download genome assemblies from NCBI with a list of GCA identifiers?
what's the genomic location and name of gene responsible for orange and black patches in calico cats
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Comment: Ciriquant not configuring hisat2 indexed files by Atul K. • 0
Thank you. Decreased the threads to 2 (changed the threads: 2 in the config file; but it was somehow using 4). It did run for sometime but …
Answer: GTF file from Stringtie to R Studio for either Ballgown or DESeq2 by Ram 43k
See this section on how to use tximport to import StringTie output for DESeq2 processing: https://bioconductor.org/packages/devel/bioc/vign…
Comment: how to find genes that are significantly expressed in brain cortex samples by Ram 43k
Can you explain the normalization or give me a link that describes it, please? Comparison across samples will always be caveated as RNA-seq…
Comment: Installing/switching between versions of R/Rstudio/Bioconductor on personal mach by Ram 43k
Sorry, I see how harsh I come across. It's not good practice to use multiple versions of R in the same project. I can understand legacy pro…
Answer: MEGA Analysis Issue on High-Performance Computer by Mensur Dlakic ★ 27k
> I have ensured that I am using the latest version of MEGA and that other applications are not consuming excessive resources during the an…
Comment: Installing/switching between versions of R/Rstudio/Bioconductor on personal mach by BioinfGuru ★ 1.7k
Some of us are still learning and fall foul to knowledge limitation fairly regularly. Luckily we have people to put us in our place.
Answer: Running blastp with BLAST+ 2.15.0 against custom database; need to identify hits by GenoMax 141k
> I know that I should be able to collect protein sequences from the blastp results into a file, but I do not know how to do this. You c…
Comment: how to find genes that are significantly expressed in brain cortex samples by rheab1230 ▴ 140
I got the normalized gene count from gtex portal. they use inverse quantile normalization
Comment: what's the genomic location and name of gene responsible for orange and black pa by Matthias Zepper 4.5k
It is not entirely off, but evidently also not correct. Melanin biosynthesis is a multistep process, that indeed prominently involves the…
Comment: Installing/switching between versions of R/Rstudio/Bioconductor on personal mach by Ram 43k
> so a single Rscript could utilise multiple environments and versions How is that sane, let alone "better"? Also, why use `snap` for curl…
Comment: how to find genes that are significantly expressed in brain cortex samples by Ram 43k
Normalized how?
Comment: Duplicate marking, read names, and the SRA by GenoMax 141k
With public data one has to work with what is there. If the information about position is absent then only thing that could be done is to l…
Comment: Installing/switching between versions of R/Rstudio/Bioconductor on personal mach by BioinfGuru ★ 1.7k
Or better yet. To have an R package that allows access to conda environments via "conda list env" so that environments can be switched with…
Comment: what's the genomic location and name of gene responsible for orange and black pa by GenoMax 141k
If GPT is right then it says that: > The specific gene responsible for the orange and non-orange (black or > gray) fur colors in cats is t…
Comment: what's the genomic location and name of gene responsible for orange and black pa by Jean-Karim Heriche 27k
As far as I know the Orange locus hasn't been mapped to a gene. Maybe this paper will help in narrowing the search: https://www.ncbi.nlm.ni…
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