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News: FINAL CALL - Single-Cell RNA-Seq Data Analysis: A Practical Introduction (May 6-8, 2024 in Berlin)
single-cell sequencing
11 days ago by David Langenberger 11k
12
votes
2
replies
415
views
News: 8th Berlin Summer School in NGS Data Analysis (June 10-14, 2024) - already half booked
Workshop RNA-Seq DNA-Seq Illumina
6 days ago by David Langenberger 11k
3
votes
2
replies
524
views
News: Announcement: Research Topic "Mechanistic, Machine Learning and Hybrid Models of the 'Other' Endocrine Regulatory Systems in Health and Disease", Vol…
mathematical-modelling endocrinology ML systems-biology machine-learning
17 days ago by Johannes W. Dietrich • 0
0
votes
0
replies
103
views
News: Online course: Multivariate Data Analysis with R and vegan
Multivariate-Statistics vegan R
updated 7 days ago by 43k • written 8 days ago by ★ 2.5k
0
votes
0
replies
151
views
News: Online course: Analysis of Prokaryotic Pangenomes (Last call)
Prokaryotic Bacterial-Genomics Pangenomics
updated 18 days ago by 43k • written 18 days ago by ★ 2.5k
0
votes
0
replies
148
views
News: Online course: Adaptation Genomics
StructuralVariants Selection AdaptationGenomics PopulationStructure
28 days ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
121
views
News: Online course: Food Traceability Using Genomic Tools
Nanopore Genomic-Tools Illumina Food-Traceability
updated 12 days ago by 43k • written 13 days ago by ★ 2.5k
0
votes
0
replies
127
views
News: Online course: Eukaryotic Metabarcoding
Metabarcoding Biodiversity R eDNA
14 days ago by carlopecoraro2 ★ 2.5k
2
votes
0
replies
100
views
News: Online Course Introduction to Network Analysis and Modelling
Python Network-Analysis
updated 4 days ago by 43k • written 5 days ago by ▴ 70
0
votes
0
replies
137
views
News: Online course: Analysis of Prokaryotic Pangenomes
BacterialGenomics Pangenomics
28 days ago by carlopecoraro2 ★ 2.5k
2
votes
0
replies
100
views
News: Online Course Generalised Additive Mixed Models (GAMM): modelling space-time correlation structures
GAMM Rlang Rstats Rproject
updated 4 days ago by 43k • written 5 days ago by ▴ 70
0
votes
0
replies
133
views
News: Online course: Network Analysis in R
NetworkAnalyis R
2 days ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
70
views
News: Deadline Approaching: PETs for Public Health Challenge
privacy public-health-challenge
updated 20 hours ago by 43k • written 21 hours ago by ▴ 380
0
votes
0
replies
164
views
News: Online course: Meta-analysis in R
Meta-Analysis R
updated 4 days ago by 43k • written 4 days ago by ★ 2.5k
1
vote
0
replies
153
views
News: Landscape Genomics course in Switzerland
LFMM Landscape-Genomics Sambada R Local-Adaptation
updated 7 days ago by 43k • written 10 days ago by ★ 2.5k
0
votes
0
replies
182
views
News: Online course: Reproducibility in Bioinformatics
Singularity Version-Control Docker Containers
updated 18 days ago by 43k • written 18 days ago by ★ 2.5k
0
votes
0
replies
145
views
News: Online course: Introduction to GWAS
GWAS Imputation StatisticalPower
23 days ago by carlopecoraro2 ★ 2.5k
2
votes
0
replies
101
views
News: Online course: Genome Annotation
Genome-Assembly RNA-seq Genome-Annotation
updated 6 days ago by 43k • written 6 days ago by ★ 2.5k
2
votes
0
replies
97
views
News: Course Functional Programming with R
Rstats TScourses Rproject KeepLearning Rlang
6 days ago by Transmitting Science communication ▴ 70
1
vote
0
replies
107
views
News: Online Live Course: Introduction to Machine Learning in R
Rstats TScourses Rlang Rproject
updated 4 days ago by 43k • written 5 days ago by ▴ 70
20 results • Page 1 of 1
Recent Votes
Comment: Bioinformatics_where do i start
Answer: Bwa sampe - BGI
Comment: Where to find the homopolymer regions bed file for Hg002 genome?
A: Code golf: detecting homopolymers of length N in the (human) genome
Code golf: detecting homopolymers of length N in the (human) genome
Answer: WGCNA network from Adjacency or TOM matrix
A: What Are The Most Common Stupid Mistakes In Bioinformatics?
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Popular Question to predeus ★ 1.9k
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Recent Replies
Comment: Visualization of PROKKA Annotation Result? by Joe 21k
Colin's answer is essentially the right one I believe, but the more immediate consideration is: *what are you actually trying to show?* Mo…
Comment: Bioinformatics_where do i start by Pierre Lindenbaum 161k
https://www.biostars.org/p/9554614/ ; https://www.biostars.org/p/98983 ; https://www.biostars.org/p/9583727/ :https://www.biostars.org/p/4…
Answer: Bwa sampe - BGI by Pierre Lindenbaum 161k
bwa sampe produces unsorted SAM , not BAM. converting SAM to BAM will reduce the size sorting the BAM will reduce the size (you can …
Comment: Where to find the homopolymer regions bed file for Hg002 genome? by Bikram Kumar • 0
Hi! Should I delete the stack exchange post? I didn't know that cross posting is bad. [https://meta.stackoverflow.com/a/425789/5140632][1] …
Answer: Visualization of PROKKA Annotation Result? by colindaven 6.3k
You need a genome browser and you can probably use GBK or gff3 format. Here are some suggestions - I like JBrowse best, Artemis in its …
Comment: Where to find the homopolymer regions bed file for Hg002 genome? by Pierre Lindenbaum 161k
cross-posted https://bioinformatics.stackexchange.com/questions/22401
Comment: Tumour purity and ploidy estimation by bp22 ▴ 60
Hi Llyod98, This issue is still unresolved and I have not been able to find a tool or solution for purity and ploidy estimation when ther…
Comment: Ensembl gene id conversion by ATpoint 81k
Can you add some examples. It is hard to debug textual descriptions.
Answer: Which experiments generate Position Frequency Matrix? by ATpoint 81k
Yes, ChIP-seq or similar methods that assay the DNA binding of a protein. But for a reliable matrix you don't need one or two but many data…
Comment: Statistical Advice Needed for RNAseq Data Analysis by ATpoint 81k
> ensuring it's not merely a product of random chance If your approach of getting DEGs is a proper and sound one (e.g. DESeq2 or limma) th…
Comment: Can I compare kallisto counts from samples with different amount of reads? by ATpoint 81k
Unequal numbers of reads are normal, that is why normalization is needed. If you want to do simple analysis such as number of detected gene…
Comment: Error in edgeR/Deseq2 Analysis by ATpoint 81k
Please ask at https://help.galaxyproject.org/ which is the Galaxy help forum.
Comment: RNAseq 1 control 2 different treatment by matteo.levorato • 0
yes, this is what I did. However, since my treatments are very similar each other, when I check upregulated genes in one treatment, they ar…
Comment: snakemake output directory by 进 • 0
it is right answer
Comment: I am new to single cell analysis. Can RNA velocity (spliced/unspliced) be calcul by Spring • 0
Thank you for the kind guidance!
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