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19 results • Page
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11
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News:
Course live online Introduction to Bayesian Analyses using R, May 8th-12th, 2023
bayesian
RProject
course
online
1 hour ago by
Sole
• 0
0
votes
0
replies
90
views
News:
course - Reproducibility in Bioinformatics
Bioinformatics
Docker
Reproducibility
1 day ago by
carlopecoraro2
★ 2.3k
0
votes
2
replies
289
views
News:
Course - Metagenomics, metatranscriptomics, and multi'omics for microbial community Studies
Metagenomics
Metatranscriptomics
Multiomics
updated 5 days ago by
Ram
38k • written 5 days ago by
carlopecoraro2
★ 2.3k
10
votes
4
replies
575
views
News:
RNA-Seq Data Analysis Workshop - Join us in Berlin, Germany from March 27-30, 2023!
NGS
transcriptomics
workshop
updated 6 days ago by
kng
▴ 30 • written 6 weeks ago by
David Langenberger
9.9k
1
vote
0
replies
140
views
News:
Summer School in Bioinformatics
Genomics
Docker
RNA-seq
updated 5 days ago by
Ram
38k • written 6 days ago by
carlopecoraro2
★ 2.3k
1
vote
0
replies
154
views
News:
Course - BIOINFORMATIC ANALYSIS OF TRANSPOSABLE ELEMENTS
Transposable-Elements
TE
Genome-Assembly
updated 5 days ago by
Ram
38k • written 9 days ago by
carlopecoraro2
★ 2.3k
5
votes
3
replies
367
views
News:
March 13-16: Virtual Nextflow and nf-core training event in 5 languages
nf-core
pipeline
Nextflow
updated 2 days ago by
Maxime Garcia
▴ 230 • written 4 weeks ago by
Matthias Zepper
3.4k
0
votes
0
replies
553
views
News:
FINAL CALL :: Online Course - A Practical Introduction to NGS Data Analysis (July 14-16, 2021)
NGS
workshop
updated 5 days ago by
Ram
38k • written 21 months ago by
David Langenberger
9.9k
8
votes
2
replies
653
views
News:
Save time and money through improved onboarding of your NGS data scientists
NGS
data-analysis
updated 5 days ago by
Ram
38k • written 3.2 years ago by
David Langenberger
9.9k
4
votes
0
replies
751
views
News:
The BioCompute Object App-a-thon starts on May 14!
standards
computation
pipeline
updated 1 day ago by
Ram
38k • written 3.9 years ago by
stephens_sarah
▴ 150
0
votes
0
replies
951
views
News:
Bioinfo-Core Conference Call, February 6th, 2018 (11 am EST USA and corresponding local times around the world)
bioinformatics-core
bioinfo-core
updated 1 day ago by
Ram
38k • written 5.1 years ago by
GenoMax
127k
5
votes
3
replies
1.3k
views
News:
Bioinfo-Core Conference Call, October 17, 2017 (11 am EDT USA, local times around world)
bioinfo-core
updated 1 day ago by
Ram
38k • written 5.6 years ago by
GenoMax
127k
0
votes
0
replies
1.3k
views
News:
Webinar: Detailed understanding of NGS quality control and file formats
NGS
fastqc
Quality-control
updated 21 minutes ago by
Ram
38k • written 6.3 years ago by
Persistent LABS
▴ 750
2
votes
2
replies
2.4k
views
News:
ENCODE 2015: Research Applications and Users Meeting
workshop
mouse-encode
encode
updated 23 hours ago by
Ram
38k • written 7.8 years ago by
Alex Reynolds
34k
0
votes
2
replies
1.4k
views
News:
M.Phil Program in Bioinformatics
education
career
updated 4 days ago by
Ram
38k • written 7.4 years ago by
rrojha143
• 0
2
votes
0
replies
2.2k
views
News:
The NAR annual Web Server Issue is here..
web-servers
updated 1 day ago by
Ram
38k • written 7.7 years ago by
Antonio R. Franco
★ 5.0k
6
votes
1
reply
1.7k
views
News:
Are protein domains indivisible?
Athropy
Domains
Proteins
updated 23 hours ago by
Ram
38k • written 7.8 years ago by
Deepak Tanwar
★ 4.2k
0
votes
0
replies
1.9k
views
News:
MAY 10 DEADLINE: Apply to Penn State’s Grad Certificate in Applied Bioinformatics – 100% ONLINE
graduate-certificate
updated 1 day ago by
Ram
38k • written 8.0 years ago by
fiochettal
▴ 10
5
votes
2
replies
3.2k
views
News:
Summary of AGBT 2015
AGBT2015
AGBT
updated 5 days ago by
Ram
38k • written 8.1 years ago by
support
▴ 640
19 results • Page
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Recent Votes
Comment: Manta and alignment name collision
Comment: Is there a site that takes a list of uniprot IDs/gene IDs as input and create ph
How is allelle frequency calculated ?
Comment: Can I use abundance from Tximport to compare the expression level of transcript
Get Amino Acid Changes From Snp Calls
Answer: Splitting a Nebulosa (Seurat wrapper) visualization by treatment group
Answer: API REST ALINGMENT
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Popular Question
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jms2520
▴ 20
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MAPK2
▴ 40
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Maxine
• 0
Scholar
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Trivas
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Mensur Dlakic
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Recent Replies
Comment: Manta and alignment name collision
by
German.M.Demidov
★ 2.9k
Thanks a lot! Will try both!
Comment: how to get to a VCF from bam files
by
GenoMax
127k
See: https://samtools.github.io/bcftools/howtos/variant-calling.html The `-O` option controls what kind of file you get. If you want regul…
Answer: List of cloud genomics companies
by
Simon
• 0
[Basepair][1] is a point & click way of analyzing and visualizing a variety of genetic, transcriptomic and epigenetic NGS data types. …
Answer: Multiple samples and species with kallisto bus(tools)
by
dsull
★ 4.0k
Hello! There are two questions here: 1) Mixed species, and 2) Multiple samples Let's start with question 1: You don't really know what c…
Comment: What is exactly meant by "GENCODE TSS"?
by
ConvolutedGenome
▴ 10
I dont think im confusing the two, is what I meant: I originally said that the “start” coordinate of every entry termed “transcript” under…
Comment: getting coding exon information from Ensembl API
by
Ram
38k
Your account has been suspended for bad behavior. I've re-opened the posts that you deleted because those posts belong to the community, no…
Comment: Can I use abundance from Tximport to compare the expression level of transcript
by
Ram
38k
No. I think you can compare average TPMs as long as you explicitly mention that anywhere you report metrics but don't average counts.
Comment: Manta and alignment name collision
by
Pierre Lindenbaum
153k
I wrote https://jvarkit.readthedocs.io/en/latest/SamRemoveDuplicatedNames/ to remove this kind of reads, but I'm not sure it's what you're …
Comment: getting coding exon information from Ensembl API
by
Nobody
▴ 30
can you delete my account please, because i can't do it by myself. Thank you
Comment: Java -xmx option does not limit memory usage in the ImputePipelinePlugin?
by
twrl8
• 0
Thank you very much! I will try using the singularity options. Thank you for that aswell. I will keep an eye on the docker hub for newer v…
Comment: Is there a site that takes a list of uniprot IDs/gene IDs as input and create ph
by
Pierre Lindenbaum
153k
ncbi blast a sequence accession vs the other ? then select the multiple sequence alignment view ?
Comment: Can I use abundance from Tximport to compare the expression level of transcript
by
aimanbarki
▴ 20
So can I average 6 replicates??
Comment: How can I easily remove overlapping transcripts, keeping only longest transcript
by
Juke34
7.7k
Don't use `--merge_loci` in your command line this was for AGAT version <1.0.0 (and only few scripts), now this is handled via the config.y…
Comment: getting coding exon information from Ensembl API
by
Ram
38k
> Because you just answer No we don't. I think you're confusing this professional forum contributed to by volunteers with a customer suppo…
Comment: Can I use abundance from Tximport to compare the expression level of transcript
by
Ram
38k
Oh, you can just use TPM to do that. Within sample comparison is a completely different (and much easier) game.
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