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News: Cellosaurus release 32 is available
knowledgebase database cell-line
updated 3 days ago by 39k • written 3.7 years ago by ▴ 110
0
votes
0
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695
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News: FINAL CALL - 'Introduction to NGS Data Analysis' course in Munich, October 23 - 25
NGS RNA-Seq Workshop DNA-Seq
updated 3 days ago by 39k • written 3.8 years ago by 9.9k
0
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0
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837
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News: R Package design and development and reproducible data science for biologists - FREE ACCOMMODATION
R
updated 3 days ago by 39k • written 3.8 years ago by ▴ 110
0
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0
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567
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News: Comparative Genomics Workshop . registration deadline
assembly Pacbio
updated 3 days ago by 39k • written 3.8 years ago by ★ 2.3k
0
votes
0
replies
667
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News: Interested in learning more about CRISPR Genome Editing?
Genome-Editing CRISPR
updated 3 days ago by 39k • written 3.8 years ago by ★ 2.3k
0
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0
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639
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News: Training in Creating Plots, Graphs and Maps using R @ NIH
Biomedical next-gen Data-analysis
updated 3 days ago by 39k • written 3.8 years ago by ▴ 130
0
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0
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634
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News: EMBO | EMBL Symposium: The Four-Dimensional Genome
microscopy genome DNA genomics
updated 3 days ago by 39k • written 3.8 years ago by • 0
2
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0
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785
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News: R/Bioconductor for Mass Spectrometry and Proteomics course in Berlin
R Proteomics Bioconductor
updated 3 days ago by 39k • written 3.8 years ago by ★ 2.3k
2
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0
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509
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News: Introduction to RMarkdown
R
updated 3 days ago by 39k • written 3.8 years ago by ★ 2.3k
0
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0
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595
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News: Coding In The Cloud For Biomedical Researchers - Hands-On Training - Live Cast
next-gen-sequencing rna-seq ChIP-Seq
updated 3 days ago by 39k • written 3.8 years ago by ▴ 130
0
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0
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747
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News: Training in Bioinformatics for Beginners @NIH
omics biomedical
updated 3 days ago by 39k • written 3.8 years ago by ▴ 130
0
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0
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691
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News: EMBL Conference: Expanding the Druggable Proteome with Chemical Biology
pharmacology proteome chemical-biology genetics
updated 3 days ago by 39k • written 3.9 years ago by • 0
0
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0
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655
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News: EMBO | EMBL Symposium: The Organism and its Environment
genotype organisms biological chemical phenotype
updated 3 days ago by 39k • written 3.9 years ago by • 0
0
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0
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649
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News: CFP Special Collection: Parallel Computing in Evolutionary Bioinformatics, SAGE Journal, JCR 2.203 (Q2)
CFP
updated 3 days ago by 39k • written 3.9 years ago by • 0
0
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0
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1.2k
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News: Webinar: Mapping the single-cell atlas of the bone marrow microenvironment
webinar RNA-Seq next-gen single-cell
updated 4 days ago by 39k • written 3.9 years ago by ▴ 450
3
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1
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796
views
News: Do you want to learn how to analyze your genomic data using R and Bioconductor?
Genomics R Bioconductor
updated 4 days ago by 39k • written 3.9 years ago by ★ 2.3k
0
votes
0
replies
536
views
News: Training in Advanced Transcriptomics (RNASeq) Analysis @ NIH, USA
RNA-Seq sequencing
updated 4 days ago by 39k • written 3.9 years ago by ▴ 130
0
votes
0
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684
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News: Bioinformatic Analysis of Next Generation Sequencing Data @NIH
RNA-Seq epigenomics ChIP-Seq
updated 4 days ago by 39k • written 3.9 years ago by ▴ 130
0
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0
replies
543
views
News: Webinar: Gen3 Data Exploration
sequence data-science gene
updated 4 days ago by 39k • written 3.9 years ago by ▴ 10
2
votes
0
replies
720
views
News: Bioinformatic courses in Canada (Quebec City) this September
Unix Genomics GWAS R Python
updated 4 days ago by 39k • written 3.9 years ago by ★ 2.3k
0
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0
replies
506
views
News: Interested Phylogenetic comparative methods?
R SNP next-gen
updated 4 days ago by 39k • written 3.9 years ago by ★ 2.3k
0
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0
replies
613
views
News: BIRCH Release 3.50
transcriptomics linux osx genomics
updated 4 days ago by 39k • written 3.9 years ago by ▴ 450
5
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2
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730
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News: The precisionFDA BioCompute Object App-a-thon has been extended to October 18!
BioCompute challenge
updated 4 days ago by 39k • written 3.9 years ago by ▴ 70
2
votes
0
replies
869
views
News: Metagenomics and Metabarcoding Course @ Edinburgh Genomics
metagenomics metabarcoding course workshop
updated 4 days ago by 39k • written 3.9 years ago by ▴ 40
0
votes
0
replies
849
views
News: RNA-seq Data Analysis Workshop @ Edinburgh Genomics
Linux R RNA-Seq course
updated 4 days ago by 39k • written 3.9 years ago by ▴ 40
0
votes
0
replies
740
views
News: Training in Statistical Analysis using R @NIH,September 4-6,2019
Analysis Statistical r-platform
updated 4 days ago by 39k • written 3.9 years ago by ▴ 130
0
votes
0
replies
683
views
News: Do you want to improve your programming skills?
Programming Unix Bash Python
updated 4 days ago by 39k • written 3.9 years ago by ★ 2.3k
3
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0
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1.3k
views
News: Analysis of single cell RNA-seq data - Berlin 23 -27 March 2020
scRNA-seq RNA-Seq
updated 4 days ago by 39k • written 3.9 years ago by ★ 2.3k
0
votes
0
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765
views
News: Training in Molecular Modeling and Molecular Dynamics @NIH, August 27-30,2019
dynamics sequence RNA-Seq
updated 4 days ago by 39k • written 3.9 years ago by ▴ 130
0
votes
0
replies
752
views
News: Cellosaurus release 31 is available
knowledgebase cell-line database
updated 4 days ago by 39k • written 3.9 years ago by ▴ 110
0
votes
0
replies
692
views
News: Data Visualization Course in Berlin
R
updated 4 days ago by 39k • written 3.9 years ago by ★ 2.3k
2
votes
0
replies
776
views
News: Interested in learning more about GWAS? Course in Canada this September
GWAS pipeline
updated 4 days ago by 39k • written 3.9 years ago by ★ 2.3k
0
votes
0
replies
980
views
News: Introduction to Bioinformatics using Linux (IBUL04)
Linux RNA-Seq next-gen
updated 4 days ago by 39k • written 3.9 years ago by ▴ 60
0
votes
0
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1.0k
views
News: 5 PART-FUNDED SCHOLARSHIPS for the course "The Practice of RADseq: Population Genomics Analysis with Stacks (RDSQ01)"
Genomics RAD-Seq Stacks
updated 4 days ago by 39k • written 3.9 years ago by ▴ 60
0
votes
0
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579
views
News: Training in Variant Analysis @NIH,August 20-23
genotype next-gen biomedical
updated 4 days ago by 39k • written 3.9 years ago by ▴ 130
8
votes
0
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1.1k
views
News: Final Call - Hands-On RNA-Seq Data Analysis Workshop - only 2 seats left
data-analysis RNA-Seq workshop
updated 4 days ago by 39k • written 3.9 years ago by 9.9k
2
votes
0
replies
1.6k
views
News: Course - Metabolomics - Berlin, 25-29 November 2019
Metabolomics R Bioconductor
updated 5 days ago by 39k • written 3.9 years ago by ★ 2.3k
1
vote
0
replies
654
views
News: OmicsLogic Genomics Training Program starts July 23
genome dna genomics
updated 5 days ago by 39k • written 3.9 years ago by ▴ 340
0
votes
0
replies
702
views
News: OmicsLogic Genomics Online Program
dna next-gen alignment genomics
updated 5 days ago by 39k • written 3.9 years ago by ▴ 340
3
votes
1
reply
844
views
News: Course - Genomics with R and Bioconductor - Berlin
R Bioconductor
updated 5 days ago by 39k • written 3.9 years ago by ★ 2.3k
2
votes
0
replies
823
views
News: Course: Approaches and Computational tools for CRISPR Genome editing
Genome-Editing CRISPR
updated 5 days ago by 39k • written 3.9 years ago by ★ 2.3k
2
votes
0
replies
609
views
News: Speciation Genomics course in Canada (September 2019)
R SNP next-gen
updated 5 days ago by 39k • written 3.9 years ago by ★ 2.3k
2
votes
0
replies
1.3k
views
News: UCSC Genome Browser JSON API
ucsc json api
updated 5 days ago by 39k • written 3.9 years ago by 154k
0
votes
0
replies
761
views
News: Programming for Biomedical Researchers @NIH, August 13-16,2019
training researchers biomedical
updated 5 days ago by 39k • written 4.0 years ago by ▴ 130
0
votes
0
replies
1.1k
views
News: Brand new bioinformatics courses at Edinburgh Genomics
metagenomics python RNA-Seq training
updated 5 days ago by 39k • written 4.0 years ago by ▴ 40
1
vote
0
replies
624
views
News: Course: Speciation Genomics in Canada - Quebec City, 2-6 September 2019
snp R next-gen
updated 5 days ago by 39k • written 4.0 years ago by ▴ 40
0
votes
0
replies
850
views
News: Registration open (BioSB PhD course): Machine Learning for Bioinformatics and Systems Biology, 7-11 October 2019, Amsterdam/Delft, The Netherlands
machine-learning course
updated 5 days ago by 39k • written 4.0 years ago by ▴ 20
0
votes
0
replies
689
views
News: Single-molecule long-read sequencing reveals the chromatin basis of gene expression
sequencing
updated 5 days ago by 39k • written 4.0 years ago by • 0
2
votes
0
replies
875
views
News: Introduction to GWAS Workshop- Canada 9-13 September 2019
GWAS
updated 5 days ago by 39k • written 4.0 years ago by ★ 2.3k
1
vote
0
replies
883
views
News: BBSRC (UK funding body) Review of data intensive biology in the UK
questionnaire UK
updated 5 days ago by 39k • written 4.0 years ago by 17k
144 results • Page 2 of 3
Recent Votes
ClusterProfiler : What is GeneRatio and BgRatio?
ClusterProfiler : What is GeneRatio and BgRatio?
A: ClusterProfiler : What is GeneRatio and BgRatio?
A: ClusterProfiler : What is GeneRatio and BgRatio?
Get relationships and hierarchies for GO terms
Answer: Get relationships and hierarchies for GO terms
Answer: Getting Pairwise Sequence Alignment Score With Biopython
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Recent Awards • All
Popular Question to v.berriosfarias ▴ 90
Teacher to Charles Plessy ★ 2.9k
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Recent Replies
Comment: Get relationships and hierarchies for GO terms by Alexander ▴ 70
For R-users might be interesting to look at notebook "CAFA5: train set GO terms" https://www.kaggle.com/code/antoninadolgorukova/cafa5-trai…
Comment: Getting Pairwise Sequence Alignment Score With Biopython by Alexander ▴ 70
Thanks for sharing ! Just these days I am trying to wrap my mind on protein alignments. I wonder: 1) "PID" in your post is "percentage o…
Answer: What kind of statistical test does Cellranger count use? by fracarb8 ▴ 950
You should read the [cellranger documentation][1] to understand how the analysis are performed. For example, it uses `graphclust` for clust…
Answer: Gene prediction software by alexandru.bologa.marian ▴ 40
Hi, I don't know if there are tools designed to predict pseudogenes, but If i understand correctly from your post you could predict all th…
Answer: Getting Pairwise Sequence Alignment Score With Biopython by Jonathan Lefebre ▴ 60
Maybe quite late, but in case other people are looking for this. Pairwise sequence identity can be easily calculated using basic python fun…
Comment: Getting same value for start and end position, "DNA methylation" by ATpoint 72k
Yes, that is what methylkit is for. See my answer.
Comment: Italicise annotations with pheatmap by ATpoint 72k
Inkscape you learn in a day, for basic image and figure manipulation it's really simple and a good skill to have. Highly recommended.
Comment: Installation of PPFinder by subashini.fbtpb106 • 0
Can you suggest me any software that does gene prediction by masking pseudogenes?
Comment: variant allelic fraction by Pierre Lindenbaum 154k
IMHO this is like asking for the cow when you only have a steak :-)
Comment: Getting same value for start and end position, "DNA methylation" by Pankaj • 0
yes I am working on Bisulphate sequenced data.
Answer: Get relationships and hierarchies for GO terms by rfran010 ▴ 140
Maybe stringdb? seems to have an option to do what you describe. https://string-db.org/cgi/input?sessionId=bmYwdg48WePq&input_page_activ…
Comment: How to calculate TPM from featureCounts output by rfran010 ▴ 140
This file is your counts file, isn't it?
Comment: Help with running ATAC using Encode pipeline by rfran010 ▴ 140
Curious, can you give specific examples of what you refer to as "input file" and "json file"? In the screenshot you shared, input files re…
Comment: RNASeq gene labeling and mRNA filter from bulkRNA data. by rfran010 ▴ 140
What version are you running? I use v2.0.3 on the command line. It looks like this option may be added in a later version, with `GTF.attrT…
Answer: Get relationships and hierarchies for GO terms by Vincent Laufer ★ 2.9k
Hey Daniel, **First, one potential caveat.** Above, you say "I have obtained several GO terms (indicating function and biological proc…
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