updated 12 hours ago by
Ram
43k
•
written 13 hours ago by
carlopecoraro2
★
2.5k
0
votes
0
replies
77
views
0
votes
0
replies
81
views
updated 12 hours ago by
Ram
43k
•
written 15 hours ago by
carlopecoraro2
★
2.5k
0
votes
0
replies
145
views
0
votes
0
replies
123
views
0
votes
0
replies
150
views
4 days ago by
carlopecoraro2
★
2.5k
Recent Locations •
All
United States, just now
United States, 3 minutes ago
United States, 8 minutes ago
South Korea, 10 minutes ago
China, 13 minutes ago
United States, 13 minutes ago
Palau, 16 minutes ago
Recent Awards •
All
Popular Question to
yueli7
▴
250
Popular Question to
Chirag Parsania
★
2.0k
Commentator to
GenoMax
141k
Centurion to
jkbonfield
★
1.2k
Popular Question to
Randy H
▴
110
Recent Replies
Comment: Load a full GFF3 into annotation track using arrow (Apollo)
by
cmdcolin
★
3.8k
Hi there, I let a developer know of this thread and they said they can check it out next week. Feel free to post to the https://github.com/…
Comment: Removing duplicates
by
joe
▴
500
I'd try those OP @samuel recommends
My guess is you're new to ONT, fast5 is the 'raw data' which is current over time...other than generat…
Comment: RNA seq differential expression analysis
by
swbarnes2
14k
No. Find a tutorial, try it, then if you have specific questions, ask of the galaxy help site.
Comment: Downloaded pdb's on rcsb.org
by
Ram
43k
Sure. Or, one could do:
bash try.bash "Homo sapiens" AHR | xargs -I v_pdb curl -s -o v_pdb.pdb https://files.rcsb.org/view/v_pdb.pdb
Comment: Downloaded pdb's on rcsb.org
by
GenoMax
141k
This may be the best option.
Get the PDB ID's
$ ./get.sh "Mus musculus" AHR
4M4X
5NJ8
5V0L
8H77
Then use `curl` to g…
Comment: Downloaded pdb's on rcsb.org
by
Ram
43k
It gives you the first 25 results though. I'll see if I can change that.
EDIT: I've updated that number to 250. I'm hoping you won't need …
Answer: Downloaded pdb's on rcsb.org
by
Ram
43k
I'm going to build off of OP's query and give them a simple script:
```bash
organism=$(echo $1 | sed 's/ /%20/g')
gene=$2
curl -s https:/…
Comment: miRNAs quantification using mirdeep2 tool
by
GenoMax
141k
This question does not make complete sense. If you have your own data files why do you need deep sequencing reads?
Genome (can be download…
Comment: Downloaded pdb's on rcsb.org
by
GenoMax
141k
For a non-programmer using the search builder link included above may be the best option. Even that is not very user friendly.
Comment: Downloaded pdb's on rcsb.org
by
Ram
43k
That's how they seem to have written their query - automating that is a bit of a pain though as it takes a crazy JSON as input.
Comment: Downloaded pdb's on rcsb.org
by
GenoMax
141k
You can use the "Advanced query" builder (https://www.rcsb.org/search/advanced ) to create a query like:
https://www.rcsb.org/search?requ…
Traffic: 2020 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6