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News: 7th International Conference on Artificial Intelligence and Applications (AIAPP 2020)
robot artificial-intelligence machine-learning
updated 2 days ago by 39k • written 3.6 years ago by ▴ 10
1
vote
2
replies
1.5k
views
News: NCBI Datasets - try it out!
Assembly refseq genome ncbi
updated 9 hours ago by 39k • written 3.2 years ago by ★ 3.5k
1
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0
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1.1k
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News: Advanced Sequencing Technologies & Bioinformatics Analysis Course at CSHL: November 3 - 15, 2020
course sequencing workshop
updated 15 hours ago by 39k • written 3.4 years ago by 20k
1
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0
replies
513
views
News: Calling Data Scientists and Bioinformaticians for the NHLBI Big Data Challenge Competition
Big-Data Challenge Competition
updated 11 hours ago by 39k • written 3.2 years ago by ▴ 10
1
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0
replies
608
views
News: Bioinformatics for Precision Oncology 2020 Program
cancer-biology RNA-Seq cancer
updated 14 hours ago by 39k • written 3.4 years ago by ▴ 10
0
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0
replies
507
views
News: Interested Phylogenetic comparative methods?
R SNP next-gen
updated 6 days ago by 39k • written 3.9 years ago by ★ 2.3k
0
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0
replies
544
views
News: Webinar: Gen3 Data Exploration
sequence data-science gene
updated 6 days ago by 39k • written 3.9 years ago by ▴ 10
0
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0
replies
683
views
News: UniProt: Change of line length in UniProtKB text format
uniprot
updated 5 days ago by 39k • written 3.7 years ago by ★ 2.2k
0
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0
replies
547
views
News: EMBL Course: Computing Skills For Reproducible Research: Software Carpentry
Computation
updated 2 days ago by 39k • written 3.6 years ago by • 0
0
votes
0
replies
661
views
News: UniProt: Change of annotation topic 'Interaction'
uniprot xml
updated 5 days ago by 39k • written 3.7 years ago by ★ 2.2k
0
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4
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825
views
News: Pan-Structural Variation hackathon in the Cloud!
SV sequencing
updated 13 hours ago by 39k • written 3.3 years ago by 9.6k
0
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0
replies
757
views
News: Programming with Bash and Python
Unix Bash Programming Python
updated 5 days ago by 39k • written 3.7 years ago by ★ 2.3k
0
votes
0
replies
489
views
News: 2nd National Symposium on Database Development and Biocuration
Biocuration
updated 1 day ago by 39k • written 3.5 years ago by • 0
0
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0
replies
849
views
News: RNA-seq Data Analysis Workshop @ Edinburgh Genomics
Linux R RNA-Seq course
updated 6 days ago by 39k • written 3.9 years ago by ▴ 40
0
votes
0
replies
667
views
News: Interested in learning more about CRISPR Genome Editing?
Genome-Editing CRISPR
updated 5 days ago by 39k • written 3.8 years ago by ★ 2.3k
0
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0
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493
views
News: PrecisionFDA FDA Open Data Challenge Reminder
R
updated 12 hours ago by 39k • written 3.3 years ago by ▴ 150
0
votes
0
replies
993
views
News: 9th Programming for Evolutionary Biology Course - March 2-18 2020 in Berlin, Germany
NGS evolution workshop
updated 5 days ago by 39k • written 3.7 years ago by 9.9k
0
votes
0
replies
571
views
News: Training in Advanced Transcriptomics (RNA-Seq) Analysis
Transcriptome-analysis RNA-Seq Biomedical next-gen
updated 13 hours ago by 39k • written 3.3 years ago by ▴ 130
0
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0
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576
views
News: Training in Creating Plots, Graphs and Maps using R @ NIH
RNA-Seq Biomedical next-gen
updated 13 hours ago by 39k • written 3.3 years ago by ▴ 130
0
votes
0
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767
views
News: EMBO Practical Course: Measuring Translational Dynamics by Ribosome Profiling
Ribosome-profiling Gene-expression
updated 2 days ago by 39k • written 3.6 years ago by • 0
0
votes
0
replies
506
views
News: Deadline extended for the FDA Open Data Adverse Event Anomalies Challenge
R
updated 12 hours ago by 39k • written 3.3 years ago by ▴ 150
0
votes
0
replies
531
views
News: Training in NCBI Resources for Biomedical Researchers @NIH
Resources NCBI Biomedical Researchers Programming
updated 12 hours ago by 39k • written 3.3 years ago by ▴ 130
0
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0
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445
views
News: Results are now Available for the precisionFDA, George Washington University, and FDA/CBER HIVE BioCompute Object App-a-thon
R
updated 9 hours ago by 39k • written 3.2 years ago by ▴ 150
0
votes
0
replies
612
views
News: Training in Bioinformatic Analysis of Next Generation Sequencing Data@NIH
Genomics RNA-Seq Biomedical next-gen
updated 13 hours ago by 39k • written 3.3 years ago by ▴ 130
0
votes
0
replies
160
views
News: Generalized Linear Models (GLM) course in R
R GLM statistics
5 days ago by carlopecoraro2 ★ 2.3k
0
votes
0
replies
531
views
News: Reminder for the FDA Open Data Adverse Event Anomalies Challenge
R
updated 11 hours ago by 39k • written 3.3 years ago by ▴ 150
0
votes
0
replies
569
views
News: 5th edition of the POPULATION GENOMICS course in Berlin
R genome next-gen
updated 2 days ago by 39k • written 3.6 years ago by ★ 2.3k
0
votes
0
replies
593
views
News: Cellosaurus release 34 is available
knowledgebase cell-line
updated 11 hours ago by 39k • written 3.2 years ago by ▴ 110
0
votes
0
replies
485
views
News: Deadline extended for the FDA Open Data Adverse Event Anomalies Challenge
R
updated 11 hours ago by 39k • written 3.2 years ago by ▴ 150
0
votes
0
replies
634
views
News: EMBO | EMBL Symposium: The Four-Dimensional Genome
microscopy genome DNA genomics
updated 5 days ago by 39k • written 3.8 years ago by • 0
0
votes
0
replies
1.0k
views
News: EMBL Course: Quantitative Proteomics: Strategies and Tools to Probe Biology
Data-analysis Proteomics
updated 2 days ago by 39k • written 3.6 years ago by • 0
0
votes
0
replies
740
views
News: Training in Statistical Analysis using R @NIH,September 4-6,2019
Analysis Statistical r-platform
updated 6 days ago by 39k • written 3.9 years ago by ▴ 130
0
votes
0
replies
1.2k
views
News: Webinar: Mapping the single-cell atlas of the bone marrow microenvironment
webinar RNA-Seq next-gen single-cell
updated 6 days ago by 39k • written 3.9 years ago by ▴ 450
0
votes
0
replies
673
views
News: EMBL Conference: From Functional Genomics to Systems Biology
Proteomics Genomic Systems-biology Chromatin
updated 2 days ago by 39k • written 3.7 years ago by • 0
0
votes
0
replies
691
views
News: Training in Linux for Biomedical Researchers@NIH, USA,May 13-15,2020
Linux Training Biomedical Researchers Programming
updated 12 hours ago by 39k • written 3.3 years ago by ▴ 130
0
votes
0
replies
690
views
News: Training in Statistical Analysis using R @NIH, February 5-7,2020
statistical-analysis R training
updated 15 hours ago by 39k • written 3.4 years ago by ▴ 130
0
votes
0
replies
654
views
News: Training in Programming for Biomedical Researchers @NIH, USA,March 2-5,2020
Researchers Biomedical Programming
updated 14 hours ago by 39k • written 3.4 years ago by ▴ 130
0
votes
0
replies
441
views
News: Phase 2 Data Now Available for the precisionFDA and Georgetown ICBI Brain Cancer Challenge
gene
updated 12 hours ago by 39k • written 3.3 years ago by ▴ 150
0
votes
0
replies
934
views
News: Physalia courses in February 2020 (Berlin)
assembly R SNP sequencing
updated 1 day ago by 39k • written 3.5 years ago by ★ 2.3k
0
votes
0
replies
838
views
News: R Package design and development and reproducible data science for biologists - FREE ACCOMMODATION
R
updated 5 days ago by 39k • written 3.8 years ago by ▴ 110
0
votes
0
replies
981
views
News: Introduction to Bioinformatics using Linux (IBUL04)
Linux RNA-Seq next-gen
updated 6 days ago by 39k • written 3.9 years ago by ▴ 60
0
votes
0
replies
910
views
News: scRNA-seq data analysis course in Berlin
scRNAseq R RNA-Seq RNA
updated 2 days ago by 39k • written 3.6 years ago by ★ 2.3k
0
votes
1
reply
983
views
News: Course 16S Metabarcoding in Berlin (March 2020)
R Qiime2 Metabarcoding
updated 2 days ago by 39k • written 3.6 years ago by ★ 2.3k
0
votes
0
replies
649
views
News: CFP Special Collection: Parallel Computing in Evolutionary Bioinformatics, SAGE Journal, JCR 2.203 (Q2)
CFP
updated 5 days ago by 39k • written 3.9 years ago by • 0
0
votes
0
replies
672
views
News: 5-day course on Metabolomics in Berlin
Metabolomics R
updated 2 days ago by 39k • written 3.6 years ago by ★ 2.3k
0
votes
1
reply
1.7k
views
News: Course: Introduction to GWAS (BERLIN)
GWAS R Python Snakemake
updated 2 days ago by 39k • written 3.6 years ago by ★ 2.3k
0
votes
0
replies
683
views
News: EMBL Course: Analysis and Integration of Transcriptome and Proteome Data
Data-analysis Proteomics Transcriptomics
updated 2 days ago by 39k • written 3.6 years ago by • 0
0
votes
0
replies
601
views
News: 3rd edition of single cell RNAseq course in Berlin
next-gen-sequencing R RNA-Seq
updated 1 day ago by 39k • written 3.5 years ago by ★ 2.3k
0
votes
0
replies
889
views
News: Discovering the world of the Long-read nanopore Sequencing
assembly Pacbio nanopore sequencing
updated 1 day ago by 39k • written 3.5 years ago by ★ 2.3k
0
votes
0
replies
537
views
News: Training in Advanced Transcriptomics (RNASeq) Analysis @ NIH, USA
RNA-Seq sequencing
updated 6 days ago by 39k • written 3.9 years ago by ▴ 130
155 results • Page 2 of 4
Recent Votes
Comment: Differential protein expression analysis
Comment: Convert SAM to BAM
A: How Can I Get The Human Chromosome Centromere Position And Chromosome Length In
Comment: Differences in GTF files hg19 and hg38
Answer: plyranges:: summarise() not recognizing previous summarized column (counts)
NM_transcript ID gene identification
Converting Genome Coordinates From One Genome Version To Another (Ucsc Liftover, Ncbi Remap, Ensembl Api)
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Recent Awards • All
Popular Question to A_heath ▴ 140
Scholar to Gordon Smyth ★ 6.1k
Scholar to GenoMax 130k
Popular Question to Payal ▴ 140
Scholar to nux ▴ 20
Scholar to Rory Stark ★ 1.8k
Supporter to Sasha ▴ 280
Recent Replies
Comment: Plotting GO enrichment DATA by Pierre Lindenbaum 154k
how about your previous questions ? comment/validate them please. https://www.biostars.org/p/9561671/ https://www.biostars.org/p/9562339/
Comment: Visualizing several genomes/plasmids in a single figure by blur ▴ 270
Thank you, I was not aware of the bot It solved my problem :)
Comment: UCSC genome browser by Pierre Lindenbaum 154k
I can see a screenshot. What is the problem ? What should you see ? What is the content of the track config ?
Comment: Limma returned only positive logFC values by Gordon Smyth ★ 6.1k
No, the updated code is no more correct than your original code. Before you undertake any differential expression analysis, you need to ha…
Comment: Differences in GTF files hg19 and hg38 by heureuse • 0
Thank you. Noted
Answer: Adjusting for batch effect and covariates with ComBat by zahra.elahi • 0
For your first question that is "Shouldn't PCA analysis of combat_tpm look more homogenous than the original dataset?", NO, because you inc…
Answer: plyranges:: summarise() not recognizing previous summarized column (counts) by Alewa ▴ 120
solved, thanks! ``` #calculate the proportions of cpgs per chrom counts_cpgr <- cpgr %>% group_by(seqnames) %>% summarise(cnts = n()) count…
Comment: Limma returned only positive logFC values by melissachua90 ▴ 40
Thank you for your comments. I've updated my code: group <- factor(type, levels=c("1a", "1b", "1c", "2a", "2b", "2c")) design <- m…
Comment: Creating a local version of Clustered NR database by GenoMax 130k
> One idea is to provide just the representative sequences as a first > pass. This seems reasonable since it should capture significant pa…
Comment: pal2nal -nogap -nomismatch options not working by Marie • 0
Hi, did you end up solving this? I am running into the same issue. Marie
Comment: How to get information about promoter from bulk-RNAseq? by camillab. ▴ 130
and what about enhancer? is it possible to do it from a bulk-RNAseq?
Comment: How to get information about promoter from bulk-RNAseq? by camillab. ▴ 130
yes! clearly the terminology on my side needs to improved!
Comment: How to get information about promoter from bulk-RNAseq? by rpolicastro 12k
Generally speaking, most promoters only initiate transcription for a single gene, with a single gene potentially having multiple promoters …
Answer: How to get information about promoter from bulk-RNAseq? by Trivas ★ 1.2k
I'd probably select the genes of interest from your bulk RNA-seq results then use the UCSC table browser to get the sequence upstream of th…
Comment: How to add annotation columns with specific colors to the heatmap? by Ram 39k
Show us your exact code - it is quite easy to tweak colors in ComplexHeatmap with the `col=` argument.
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