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Recent Replies
Comment: Is it possible to get a list of representative genomes from a past RefSeq releas
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GenoMax
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At this point you should email NCBI help desk and ask them this question. If you get an answer then please post it back in this thread.
Comment: Figures are disappeared from html report of SnpEff
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Pierre Lindenbaum
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the javascript in your html is deprecated or your firefox is just tool old.
Comment: Why gatk VariantAnnotator required bam and coverage files
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Pierre Lindenbaum
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> I would like to ask why they may require the bam file for this function?
hum.. if you want to add the coverage, where do you think gatk …
Comment: Figures are disappeared from html report of SnpEff
by
analyst
▴
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By following above approach I got this
![enter image description here][1]
[1]: /media/images/b47490eb-d4c4-4f39-a7b2-f5b7b6b8
Comment: Highest variable features in single cell data
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Kazo
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I apologize for the confusion. What I meant to say is that, for example, the Trbv17 gene appears among the variable genes. However, when I …
Answer: why renaming Idents in Seurat object doesn't work?
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I manage to find a workwround, but I don't understand what I did wrong here.
my solution was to extract the cluster column as vector and…
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Adrian Altenhoff
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Hi,
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Comment: Fetch table from clinvar database according to a list of rsid
by
ashaneev07
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so which one should i prefer? i don't need the entire results i need the condition-Germline table only. (for eg:-from, https://www.ncbi.nlm…
Comment: To get p-values for the TPM
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dsull
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OK, not sure why your intention is to use RSEM p-values for, but at least tell us the commands you ran then otherwise how are we supposed t…
Comment: Fetch table from clinvar database according to a list of rsid
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> Don't forget to follow up on your threads. If an answer was helpful, you should upvote it; if the answer resolved your question, you shou…
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Sure, I'll inquire about the version of Rsubread. I'll keep you posted if it works :) Thanks
Comment: different FeatureCounts output for the same data
by
sehriban.buyukkilic
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Yeah, let me show you my featureCounts result, it looks like this. It's too low.
[1]: /media/images/eb8293fe-e6ae-4b02-92e2-0ba2075b
Comment: Adding CB tag to bam file
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Pierre Lindenbaum
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samtools addreplacerg is for read groups. This is not what OP asked.
Comment: Adding CB tag to bam file
by
Maria
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When I try ``` samtools addreplacerg -r "@CB\tID:$cell" -o $cell.bam $LINE``` the CB tag gets add to the header, but the tag in every line …
Answer: Figures are disappeared from html report of SnpEff
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Pierre Lindenbaum
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the remote website providing the javascript or/and the images is down or you're now behind a proxy. Check the firefox console: https://fire…
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