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Ram
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Deepak Tanwar
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written 7.7 years ago by
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News:
FINAL CALL :: Online Course - A Practical Introduction to NGS Data Analysis (July 14-16, 2021)
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Ram
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written 21 months ago by
David Langenberger
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updated 6 days ago by
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updated 1 day ago by
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written 6.3 years ago by
Persistent LABS
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News:
MAY 10 DEADLINE: Apply to Penn State’s Grad Certificate in Applied Bioinformatics – 100% ONLINE
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Recent Replies
Comment: how to get to a VCF from bam files
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Ram
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Read my script - change your bcftools to output VCF, not BCF. File size (as long as it's >0) is not an indicator of anything significant.
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Thanks a lot GenoMax and Ram!
After a short look into that manual https://samtools.github.io/bcftools/howtos/variant-calling.html I went w…
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bcftools does not differentiate. It calls variant loci. I don't think there's a single variant caller that calls both germline and somatic …
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Please format your code properly the next time. I've seen people use wrong formatting options to a reasonable extent, but your formatting w…
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1. Don't use people's names as tags.
2. Format your post properly. I've done what I can for now.
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lieven.sterck
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et mon français est assez bien pour comprendre ce que tu as écrit la ;-)
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Constanza
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Thanks for answering so fast, it was very helpful.
I shouldn't pay much attention to if COGs are separated by a comma or not then. As long…
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well, because this is not you guys' private forum, there are other people participating (not native french speaking) , just to give a reaso…
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what you likely will need to do:
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The meaning of individual letters is described in a well-known COG functional code:
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You may try to check what happened with DEGs obtained using the 300 fragments assembly by getting the sequences of these genes and comparin…
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Thanks, that did work.
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No idea, I don't use databricks. I'd read the docs, find a local expert to help you out, or contact their support, likely in that order.
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