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updated 1 day ago by
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written 1 day ago by
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Recent Replies
Answer: MEGA Analysis Issue on High-Performance Computer
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> I have ensured that I am using the latest version of MEGA and that other applications are not consuming excessive resources during the an…
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BioinfGuru
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Some of us are still learning and fall foul to knowledge limitation fairly regularly. Luckily we have people to put us in our place.
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> I know that I should be able to collect protein sequences from the blastp results into a file, but I do not know how to do this.
You c…
Comment: how to find genes that are significantly expressed in brain cortex samples
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I got the normalized gene count from gtex portal. they use inverse quantile normalization
Comment: what's the genomic location and name of gene responsible for orange and black pa
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It is not entirely off, but evidently also not correct.
Melanin biosynthesis is a multistep process, that indeed prominently involves the…
Comment: Installing/switching between versions of R/Rstudio/Bioconductor on personal mach
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Ram
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> so a single Rscript could utilise multiple environments and versions
How is that sane, let alone "better"? Also, why use `snap` for curl…
Comment: how to find genes that are significantly expressed in brain cortex samples
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Ram
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Normalized how?
Comment: Duplicate marking, read names, and the SRA
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With public data one has to work with what is there. If the information about position is absent then only thing that could be done is to l…
Comment: Installing/switching between versions of R/Rstudio/Bioconductor on personal mach
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BioinfGuru
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Or better yet. To have an R package that allows access to conda environments via "conda list env" so that environments can be switched with…
Comment: what's the genomic location and name of gene responsible for orange and black pa
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GenoMax
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If GPT is right then it says that:
> The specific gene responsible for the orange and non-orange (black or
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As far as I know the Orange locus hasn't been mapped to a gene. Maybe this paper will help in narrowing the search: https://www.ncbi.nlm.ni…
Comment: Duplicate marking, read names, and the SRA
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Luka
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>Curios if there a reference for this?
[Apparently it's not deprecated yet][1], but will be soon and the SRA intends for it to be at some …
Comment: Installing/switching between versions of R/Rstudio/Bioconductor on personal mach
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Ram
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I prefer RStudio for new projects as well. The moment I need versions though, RStudio becomes a burden. I wish one could launch RStudio fro…
Comment: what's the genomic location and name of gene responsible for orange and black pa
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GenoMax
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According to ChatGPT: The gene responsible for the orange and black patches of fur in calico cats (and tortoiseshell cats) is the X-linked …
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BioinfGuru
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Certainly true. Switching versions is way simpler that way, at the cost of the familiarity of the Rstudio IDE - especially if the code is w…
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