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12 results • Page
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News:
New version of ElasticBLAST (1.2.0) available from NCBI
ElasticBLAST
NCBI
BLAST
2 days ago by
PeterC_NCBI
▴ 370
0
votes
0
replies
87
views
News:
Course. - Gene Set Enrichment Analysis in R/Bioconductor - ONLINE, 22-25 January
R
GeneSetEnrichmentAnalysis
GSEA
Bioconductor
2 days ago by
carlopecoraro2
★ 2.4k
0
votes
1
reply
345
views
News:
RNA-Seq Data Analysis Workshop (March 11 - 14, 2024 in Berlin, Germany)
NGS
RNA-Seq
Workshop
2 days ago by
David Langenberger
10k
0
votes
0
replies
121
views
News:
University of Connecticut Single Cell RNA-seq Workshop December 12-15, 2023
expression
singlecell
rnaseq
3 days ago by
mia.nahom
▴ 10
0
votes
0
replies
72
views
News:
Online course: Introduction to Python, February 12th-March 11th, 2024
python
courses
5 days ago by
Sole
• 0
0
votes
1
reply
145
views
News:
Course: Genome Assembly and Annotation
Biodiversity
Genome-Assembly
Genome-Annotation
Long-reads
updated 5 days ago by
Ram
41k • written 9 days ago by
carlopecoraro2
★ 2.4k
0
votes
0
replies
190
views
News:
GWAS course
R
GWAS
updated 5 days ago by
Ram
41k • written 16 days ago by
carlopecoraro2
★ 2.4k
0
votes
0
replies
135
views
News:
Course - Introduction to R Shiny
R
Data-Visualisation
Shiny
updated 5 days ago by
Ram
41k • written 18 days ago by
carlopecoraro2
★ 2.4k
0
votes
0
replies
141
views
News:
Course - RNAseq in non-model organisms
Pacbio
RNA-seq
Nanopore
updated 5 days ago by
Ram
41k • written 19 days ago by
carlopecoraro2
★ 2.4k
0
votes
0
replies
175
views
News:
Course - Computational Tumor Evolution
Tumor-Evolution
Cancer-Genomics
updated 5 days ago by
Ram
41k • written 22 days ago by
carlopecoraro2
★ 2.4k
0
votes
0
replies
169
views
News:
Course: Genome Assembly using Oxford Nanopore Sequencing
Genome-Assembly
Nanopore
updated 5 days ago by
Ram
41k • written 27 days ago by
carlopecoraro2
★ 2.4k
0
votes
0
replies
165
views
News:
Course - Introduction to Bayesian Data Analysis
R
Statistics
Bayesian
Regression-Modeling
updated 5 days ago by
Ram
41k • written 4 weeks ago by
carlopecoraro2
★ 2.4k
12 results • Page
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Recent Votes
Answer: Can't install hisat2 with miniconda
Answer: Can't install hisat2 with miniconda
Answer: Can't install hisat2 with miniconda
Answer: iqtree vs raxml
Comment: which statistical test and which package for comapre datasets?
Answer: Bowtie 2 alignment
Answer: GO, KEGG, GSEA analysis with ~5 DEGs
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Comment: What apps can read large FASTQ files on Windows?
by
dsull
★ 5.1k
Why do you want to open up such a large file in a text editor? You're not really going to learn anything new from manually looking at milli…
Comment: Can't install hisat2 with miniconda
by
Ozymandeus
▴ 30
Thank you! This fixed the issue.
Comment: Tutorials for Spatial Transcriptomics
by
CTLong
▴ 50
Although I'm not that into ST, but personally, when I learn a new technology, I usually play around with the data that had already been gen…
Comment: Is interleaved Fastq files the same as interlaced fastq
by
GenoMax
136k
> SPAdes wants interlaced fastq and BWA-MEM wants interleaved fastq Both programs will accept separate paired-end files. The reads in the …
Comment: which statistical test and which package for comapre datasets?
by
LauferVA
3.8k
@414fa591 this question is in need of clarification, as @rpolicastro has already said. However, based on what you've written, ***the resea…
Comment: Bowtie 2 alignment
by
Elizabeth
▴ 30
Thank you so much. I'm getting comparable results now. Appreciate the quick response.
Comment: which statistical test and which package for comapre datasets?
by
rpolicastro
12k
You should explain your experiment in more detail, such as the hypothesis you are testing and the samples you have to test this.
Comment: which statistical test and which package for comapre datasets?
by
satva72
• 0
thanks for you comment. I think its possible if we compare the different dataset?! to show that distribution is different between datasets.
Comment: How to display a VCF/BCF file or stream as a paginated table in a python web fra
by
Jeremy Leipzig
22k
seqr now supports Hail but with a layer of elasticsearch. It does not support TileDB but in theory it could.
Comment: which statistical test and which package for comapre datasets?
by
Jeremy
▴ 860
I think you will need at least three replicates to be able to do statistics.
Comment: GetPileupSummaries intervals-list with Targeted Sequencing?
by
Pierre Lindenbaum
158k
> Asking for bed file is not a suitable option in the current scenario. ???????
Comment: GetPileupSummaries intervals-list with Targeted Sequencing?
by
Manuel Sokolov Ravasqueira
▴ 100
they only provided me the sorted.bam files aligned with hg19. I converted bam into fastq and started variant calling from there. Asking for…
Comment: GetPileupSummaries intervals-list with Targeted Sequencing?
by
Pierre Lindenbaum
158k
> kit is proprietary I can't imagine you get a targeted sequencing without having a BED file....
Comment: GetPileupSummaries intervals-list with Targeted Sequencing?
by
Manuel Sokolov Ravasqueira
▴ 100
thanks for the suggestion. how can i obtain the bedfile of my targets (kit is proprietary - can I obtain bed from fasta? if yes how?)
Comment: Is interleaved Fastq files the same as interlaced fastq
by
rpolicastro
12k
This may indicate that your R1 and R2 reads were processed in a way that didn't maintain the 1:1 order of matching forward and reverse read…
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