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did you see my updated post? once we get past that, id be willing to tackle this.
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@genomax the funny thing is, I couldn't agree more with literally everything in your post. I sat there nodding my head for the duration of …
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I know GRCh37 is synonymous (with minor differences) with hg19. However, I'm wondering if NCBI37 is synonymous with GRCh37 and hg19. Maybe …
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If you go to the GRCh37 page at NCBI you will see that `hg19` is a synonym (mostly used by UCSC as I recall): https://www.ncbi.nlm.nih.gov/…
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So do we have redundant in this case when we specify the path to fastq.gz files in both input file and json file? json file is .json, how a…
Comment: Is a human genome file with reference as NCBI37 the same as hg19?
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Note: I've also asked this [here][1]
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featureCounts can extract this information and output a column for you during counting, presuming you input a GTF file.
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Trying to do so ))
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The "Input files" section is details on how you can specify your fastqs in the JSON. (You specify all pipeline parameters in the JSON.)
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does this mean you understand pident now and are moving forward?
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Not only is this not surprising, it is the basis for an entire class of statistical techniques referred to as permutation bas…
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> This generated multiple Trinity.fa files in the index folder
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