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News: The Biostar Handbook. A bioinformatics e-book for beginners.
training handbook
updated 12 days ago by 1.6k • written 6.3 years ago by 97k
1
vote
0
replies
142
views
News: NCBI's IgBLAST version 1.21.0 is now available
IgBLAST BLAST T-Cell NCBI receptors
updated 2 days ago by 127k • written 2 days ago by ▴ 210
0
votes
0
replies
141
views
News: ISMB-affiliated virtual tutorial on Neo4j/Cypher for life sciences
neo4j cypher graph knowledge
3 days ago by Stephen • 0
0
votes
0
replies
123
views
News: Announcing workshop on Declarative Programming in Biology and Medicine (Seattle, Sept. 2023)
medicine declmed declarative icfp precision
3 days ago by Stephen • 0
0
votes
0
replies
92
views
News: Course live online Introduction to Bayesian Analyses using R, May 8th-12th, 2023
bayesian RProject course online
4 days ago by Sole • 0
0
votes
0
replies
102
views
News: course - Reproducibility in Bioinformatics
Docker Reproducibility
updated 3 days ago by 38k • written 5 days ago by ★ 2.3k
0
votes
2
replies
297
views
News: Course - Metagenomics, metatranscriptomics, and multi'omics for microbial community Studies
Metagenomics Metatranscriptomics Multiomics
updated 9 days ago by 38k • written 9 days ago by ★ 2.3k
10
votes
4
replies
581
views
News: RNA-Seq Data Analysis Workshop - Join us in Berlin, Germany from March 27-30, 2023!
NGS transcriptomics workshop
updated 10 days ago by ▴ 30 • written 6 weeks ago by 9.9k
1
vote
0
replies
144
views
News: Summer School in Bioinformatics
Genomics Docker RNA-seq
updated 10 days ago by 38k • written 10 days ago by ★ 2.3k
1
vote
1
reply
247
views
News: Sign-ups for the St. Jude KIDS23 BioHackathon (May 3-5th) open through March 15th!
stjude hackathon
12 days ago by jared.andrews07 ★ 14k
1
vote
0
replies
159
views
News: Course - BIOINFORMATIC ANALYSIS OF TRANSPOSABLE ELEMENTS
Transposable-Elements TE Genome-Assembly
updated 10 days ago by 38k • written 13 days ago by ★ 2.3k
0
votes
0
replies
113
views
News: Environmental Metagenomics course
Environmental-Metagenomics
updated 18 days ago by 38k • written 18 days ago by ★ 2.3k
0
votes
0
replies
134
views
News: Course - GENERALIZED LINEAR MODELS in R
GLMs R GeneralisedLinearModels
19 days ago by carlopecoraro2 ★ 2.3k
1
vote
0
replies
185
views
News: Virtual Single Cell RNA-seq Workshop
single genomics cell expression rna-seq workshop gene
23 days ago by mia.nahom ▴ 10
1
vote
0
replies
193
views
News: Advanced Bayesian statistics in R course
Statistics RegressionModeling Bayesian R
24 days ago by carlopecoraro2 ★ 2.3k
0
votes
0
replies
120
views
News: Course - INTRODUCTION TO THE ANALYSIS OF LONGITUDINAL DATA WITH R
Genomics LongitudinalData R
26 days ago by carlopecoraro2 ★ 2.3k
1
vote
0
replies
197
views
News: The GDC Legacy Archive is retiring soon.
genomic-data-commons tcga gdc
updated 27 days ago by 38k • written 27 days ago by ▴ 750
0
votes
0
replies
197
views
News: course MULTIVARIATE DATA ANALYSIS WITH R AND VEGAN
Vegan MULTIVARIATEDATAANALYSIS Statistics R
4 weeks ago by carlopecoraro2 ★ 2.3k
0
votes
0
replies
159
views
News: course - single-cell RNAseq with R/Bioconductor
Bioconductor single-cell genomics RNAseq
updated 19 days ago by 38k • written 4 weeks ago by ★ 2.3k
0
votes
0
replies
272
views
News: Course - Analysis of PROKARYOTIC PANGENOMES
Genomics Pangenomes
updated 4 weeks ago by 38k • written 5 weeks ago by ★ 2.3k
5
votes
3
replies
386
views
News: March 13-16: Virtual Nextflow and nf-core training event in 5 languages
nf-core pipeline Nextflow
updated 6 days ago by ▴ 230 • written 5 weeks ago by 3.4k
0
votes
1
reply
146
views
News: Courses in March. -still a few seats available
Bioconductor Genomics R
updated 5 weeks ago by 38k • written 5 weeks ago by ★ 2.3k
0
votes
0
replies
162
views
News: course - Next steps in applied Bayesian regression modeling
Statistics RegressionModeling Bayesian R
5 weeks ago by carlopecoraro2 ★ 2.3k
0
votes
0
replies
204
views
News: Introduction to GWAS course in June
GWAS R
updated 19 days ago by 38k • written 6 weeks ago by ★ 2.3k
0
votes
0
replies
206
views
News: Introduction to GWAS course (6th edition) - June, 5th-8th
GWAS R
updated 6 weeks ago by 38k • written 6 weeks ago by ★ 2.3k
0
votes
0
replies
141
views
News: Course - Version Control for Researchers
VersionControl GIT Github
6 weeks ago by carlopecoraro2 ★ 2.3k
0
votes
0
replies
271
views
News: Course - INTRODUCTION TO PYTHON PROGRAMMING FOR BIOLOGISTS
Programming Python
updated 6 weeks ago by 38k • written 7 weeks ago by ★ 2.3k
0
votes
0
replies
175
views
News: Eukaryotic Metabarcoding course
eDNA Metabarcoding
updated 7 weeks ago by 38k • written 7 weeks ago by ★ 2.3k
0
votes
3
replies
338
views
News: NCBI update complete. Aspera users please update your client.
NCBI Submissions GenBank
6 weeks ago by PeterC_NCBI ▴ 210
0
votes
0
replies
163
views
News: Course - Mass Spectrometry and Proteomics in R/Bioconductor
Bioconductor MassSpectrometry R Proteomics
7 weeks ago by carlopecoraro2 ★ 2.3k
0
votes
0
replies
311
views
News: Course - Machine Learning in R (for omics data)
Genomics omics MachineLearning R
8 weeks ago by carlopecoraro2 ★ 2.3k
2
votes
0
replies
207
views
News: Course - Reproducibility in Bioinformatics
Reproducibility
updated 7 weeks ago by 38k • written 8 weeks ago by ★ 2.3k
0
votes
0
replies
159
views
News: course - Multivariate data analysis with R and vegan
Statistics MultivariateAnalysis R vegan
8 weeks ago by carlopecoraro2 ★ 2.3k
0
votes
2
replies
668
views
News: Online Course - A Practical Introduction to NGS Data Analysis (February 01-03, 2023)
NGS DNAseq variant-calling RNAseq
8 weeks ago by David Langenberger 9.9k
0
votes
0
replies
233
views
News: Bioinformatics courses in February
Genomics BioinformaticsTraining
8 weeks ago by carlopecoraro2 ★ 2.3k
0
votes
0
replies
538
views
News: Reminder: NCBI Aspera access, update Aspera Connect by Feb 1, 2023
Aspera NCBI SRA GenBank
8 weeks ago by PeterC_NCBI ▴ 210
1
vote
2
replies
367
views
News: Course: Network Analysis in R
NetworkAnalyis R
8 weeks ago by carlopecoraro2 ★ 2.3k
0
votes
0
replies
222
views
News: de novo RNA-seq Analysis Workshop
virtual workshop rna transcriptome
9 weeks ago by mia.nahom ▴ 10
0
votes
0
replies
267
views
News: Genomic Prediction course
Selective-Breeding Genomic-Prediction
updated 7 weeks ago by 38k • written 9 weeks ago by ★ 2.3k
1
vote
0
replies
335
views
News: course: Meta-analysis in R
Statistics MetaAnalysis R
10 weeks ago by carlopecoraro2 ★ 2.3k
0
votes
0
replies
309
views
News: GSEA in R/Bioconductor course
Bioconductor R GSEA GeneSetEnrichmentAnalysis
10 weeks ago by carlopecoraro2 ★ 2.3k
0
votes
0
replies
547
views
News: For NCBI Aspera access, update Aspera Connect by Feb 1, 2023
Aspera NCBI GenBank
10 weeks ago by PeterC_NCBI ▴ 210
0
votes
0
replies
248
views
News: Metabarcoding in Microbial Ecology
Metabarcoding Qiime2 16S MicrobialEcology R
10 weeks ago by carlopecoraro2 ★ 2.3k
0
votes
0
replies
241
views
News: Metagenomics tools recommeder system
NGS Metagenomics Recommender-system
updated 10 weeks ago by 38k • written 10 weeks ago by • 0
0
votes
0
replies
332
views
News: Hands-On NGS Data Analysis Workshops 2023
NGS Workshop RNA-Seq DNA-Seq
10 weeks ago by David Langenberger 9.9k
1
vote
5
replies
666
views
News: Cancer Genomics course - 2 seats left
Genomics Cancer-Genomics R
updated 7 weeks ago by 38k • written 11 weeks ago by ★ 2.3k
0
votes
0
replies
230
views
News: Course on Generalised Additive Models In R
Statistics GAMs R
11 weeks ago by carlopecoraro2 ★ 2.3k
0
votes
1
reply
403
views
News: Sex Chromosome Evolution course
Genomics Sex-Chromosome-Evolution
updated 7 weeks ago by 38k • written 11 weeks ago by ★ 2.3k
1
vote
2
replies
554
views
News: New chat server (Discord) for bioinformatics
community
10 weeks ago by Samuel Lampa ★ 1.3k
0
votes
0
replies
285
views
News: Online course - Genome Assembly and Annotation
Long-reads Genome-Annotation Biodiversity Genome-Assembly
updated 7 weeks ago by 38k • written 11 weeks ago by ★ 2.3k
460 results • Page 1 of 10
Recent Votes
Answer: multiallelic variants
Answer: LIMMA calculates identical adj.P.Val for different proteins from proteomics
Comment: Hard clip fastq
Answer: Hard clip fastq
Answer: Hard clip fastq
Answer: Hard clip fastq
Comment: Protein name in GenBank
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Recent Replies
Answer: MapSplice2 gives error if the thread count (-p value) is greater than 2 by vishal.koparde ▴ 10
Any updates??
Comment: how to know what adapter sequences to trim for RNA-seq? by lunarskye222 • 0
Do you happen to know if the middle part of this udi barcode (GATCGGAAGAGCACACGTCTGAACTCCAGTCACGTCTACATATCTCG) is also part of the TruSeq a…
Comment: Hard clip fastq by GenoMax 127k
If you simply want the reads to be compatible in length then do not adapter trim.
Comment: Hard clip fastq by samuel ▴ 180
@ATpoint, so no adapter trimming first? Just trim the raw fastq?
Answer: Confused on strandedness, what are antisense transcripts? by dsull ★ 4.0k
RNA pol always transcribes 5' -> 3'. This has nothing to do with +/-. Think of it on the DNA level: If the mRNA made is the same sequenc…
Comment: Protein name in GenBank by GenoMax 127k
If you must do this programmatically then collect all cases where things differ in order of words (or number of words) like the example abo…
Answer: Hard clip fastq by GenoMax 127k
You can also use `reformat.sh` from [**BBMap suite**][1] as follows reformat.sh -Xmx2g in1=R1.fq.gz in2=R2.fq.gz out1=R1_trim.fq.gz …
Answer: Hard clip fastq by ATpoint 70k
Use `seqtk trimfq`. It makes sense to trim first to your desired length and then run identical downstream processing for a fair comparison.…
Comment: Protein name in GenBank by Mensur Dlakic ★ 23k
I think you either take time to do it properly, or you will end up missing some proteins. BLAST sequence search, even on 1500 genomes, can …
Comment: Log2 FC Threshold by ATpoint 70k
Since OP is using GEO2R which uses limma the appropriate function (need to run manually, GEO2R does not support) is `limma::treat()` rather…
Answer: Adding median value to VlnPlot in Seurat by Ming Tommy Tang ★ 2.9k
If you know ggplot2, you can `get_expression_data` function in here https://divingintogeneticsandgenomics.rbind.io/post/how-to-do-gene-corr…
Answer: how to know what adapter sequences to trim for RNA-seq? by Ming Tommy Tang ★ 2.9k
You may use fastp which detect adaptors by itself https://github.com/OpenGene/fastp#adapters
Answer: Variant Calling with Multiple Individuals in Freebayes by Ming Tommy Tang ★ 2.9k
It looks like you can provide multiple bam files and output a gVCF file https://github.com/freebayes/freebayes#usage
Answer: Log2 FC Threshold by Ming Tommy Tang ★ 2.9k
This is hard to say. Some genes could play a very different role, even with little change. You want to focus on the large FC genes initiall…
Answer: Log2 FC Threshold by Mensur Dlakic ★ 23k
There is no prescribed logFC that everyone follows. The point is to convince yourself and others - those reviewing your papers and grants -…
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