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1,000 results • Page 4 of 20
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News: course - GENOME ASSEMBLY USING OXFORD NANOPORE SEQUENCING
Long-reads Assembly Nanopore Genome
9 months ago by carlopecoraro2 ★ 2.3k
0
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0
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269
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News: Online training - VERSION CONTROL FOR RESEARCHERS
Version Control Git Github
9 months ago by carlopecoraro2 ★ 2.3k
0
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1
reply
346
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News: Research Training In NGS Data Analysis
analysis data-analysis
updated 10 months ago by 40k • written 10 months ago by • 0
0
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0
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369
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News: Bayesian regression modeling in R course
RegressionModeling Bayesian R
10 months ago by carlopecoraro2 ★ 2.3k
0
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0
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330
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News: Genome Assembly and Annotation course
Annotation Nanopore GenomeAssembly Pacbio
10 months ago by carlopecoraro2 ★ 2.3k
3
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1.1k
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News: Changes to the default NCBI BLAST nucleotide database (nt). Learn more and provide feedback!
NCBI Databases BLAST
10 months ago by PeterC_NCBI ▴ 330
0
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317
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News: Nextflow online training
Nextflow Workflow Reproducibility
updated 9 months ago by 40k • written 10 months ago by ★ 2.3k
0
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2
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1.1k
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News: :: FINAL CALL :: Next-Generation Sequencing Data Analysis: A Practical Introduction (December 12-14, 2022 in Munich, Germany)
rnaseq dnaseq sequencing ngs workshop
10 months ago by David Langenberger 10k
0
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0
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372
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News: The Association for Single Cell Analysis (ASCA)
genomics singlecell metabolomics sequencing proteomics
10 months ago by dnsv.ev • 0
0
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0
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350
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News: Deep Learning in Population Genomics and Phylogeography
DeepLearning Phylogeography PopulationGenomics
10 months ago by carlopecoraro2 ★ 2.3k
0
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0
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352
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News: Metabarcoding in Microbial Ecology Workshop
Qiime2 R Metabarcoding Microbial-Ecology
10 months ago by carlopecoraro2 ★ 2.3k
1
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2
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504
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News: Gene Set Enrichment Analysis in R/Bioconductor
Gene-Set-Enrichment-Analysis R Cancer-Genomics GSEA
10 months ago by carlopecoraro2 ★ 2.3k
0
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0
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315
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News: Analysis of RNA sequencing data with R/Bioconductor course.
Bioconductor RNAseq R
10 months ago by carlopecoraro2 ★ 2.3k
0
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0
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468
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News: Winter School in Bioinformatics
course workshop
updated 9 months ago by 40k • written 11 months ago by ★ 2.3k
1
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0
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394
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News: Introduction to Nextflow
Nextflow
updated 9 months ago by 40k • written 11 months ago by ★ 2.3k
0
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2
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580
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News: Seascape Genomics in R
Genomics Seascape R
updated 9 months ago by 40k • written 11 months ago by ★ 2.3k
0
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0
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298
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News: Bioinformatics courses in November
Bioconductor Genomics R
updated 9 months ago by 40k • written 11 months ago by ★ 2.3k
0
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0
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691
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News: Flow cytometry analysis with R/Bioconductor course
Bioconductor R Cytometry Flow
11 months ago by carlopecoraro2 ★ 2.3k
0
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0
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307
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News: course: RNA-seq analyses in non-model organisms
differential Bioconductor RNAseq expression non-model organisms analysis R
11 months ago by carlopecoraro2 ★ 2.3k
0
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324
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News: course - Developing R/Bioconductor packages for genomics
developing package Bioconductor Genomics R
11 months ago by carlopecoraro2 ★ 2.3k
2
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0
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357
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News: Four NCBI workshops in October (BLAST, Primer-BLAST, Metagenome analysis, Structures in iCn3D)
metagenomics MagicBLAST BLAST NCBI Primer-BLAST
11 months ago by PeterC_NCBI ▴ 330
0
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0
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480
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News: course - Unix and shell scripting for bioinformatics
bash Shell-scripting Unix
updated 9 months ago by 40k • written 11 months ago by ★ 2.3k
0
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0
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354
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News: course: Data Visualization in Python
Visualisation Python Data
updated 11 months ago by 134k • written 11 months ago by ★ 2.3k
0
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0
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337
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News: Seascape Genomics in R course
Genomics R Seascape Population
12 months ago by carlopecoraro2 ★ 2.3k
0
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0
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348
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News: Cellosaurus release 43 is available
cellosaurus cell-line
updated 9 months ago by 40k • written 12 months ago by ▴ 110
0
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0
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297
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News: Genomics Webinar: Using Mastermind’s New ClinVar Integration to Accelerate Clinical Diagnoses
variant-interpretation genomics database webinar
updated 9 months ago by 40k • written 12 months ago by • 0
0
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0
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359
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News: The NCTR Indel Calling from Oncopanel Sequencing Data Challenge Winners have been announced!
FDA-challenge
updated 9 months ago by 40k • written 12 months ago by ▴ 10
0
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0
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360
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News: Sex Chromosome Evolution course
course Genomics
updated 9 months ago by 40k • written 12 months ago by ★ 2.3k
0
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0
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357
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News: Online training - Cancer Genomics in R
Cancer Genomics R
updated 9 months ago by 40k • written 13 months ago by ★ 2.3k
0
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0
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427
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News: Final Call! Tomorrow (7/8) is the Deadline for Phase 1 submissions of the NCTR Indel Calling from Oncopanel Sequencing Data Challenge!
oncopanel indel-calling
updated 9 months ago by 40k • written 14 months ago by ▴ 10
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3
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1.1k
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News: Less Than One Month Remaining until the Submission Deadline for Phase 1 of the NCTR Indel Calling from Oncopanel Sequencing Data Challenge!
oncopanel indel-calling
updated 9 months ago by 40k • written 15 months ago by ▴ 10
0
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332
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News: Online course- Reproducibility in Bioinformatics - 11-13 July
Docker Reproducibility
updated 9 months ago by 40k • written 15 months ago by ★ 2.3k
0
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0
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362
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News: Online course - Metabarcoding in microbial Ecology
Qiime2 Metabarcoding Microbial-Ecology
updated 9 months ago by 40k • written 16 months ago by ★ 2.3k
3
votes
1
reply
494
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News: Free web seminars related to small non-coding RNA bioinformatics
smallRNA microRNA
updated 9 months ago by 40k • written 16 months ago by ▴ 60
0
votes
0
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346
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News: Online course - Developing R/Bioconductor packages for genomics
Bioconductor R
updated 9 months ago by 40k • written 16 months ago by ★ 2.3k
1
vote
0
replies
486
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News: Phase 1 of the NCTR Indel Calling from Oncopanel Sequencing Data Challenge is now live!
oncopanel indel-calling
updated 9 months ago by 40k • written 17 months ago by ▴ 10
0
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0
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952
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News: Pre-Register for the NCTR Indel Calling from Oncopanel Sequencing Data Challenge with FDA’s National Center for Toxicological Research (NCTR) and pre…
oncopanel indel-calling
updated 9 months ago by 40k • written 17 months ago by ▴ 10
0
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1
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2.2k
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News: Nature Index: Novogene is teaming up with laboratories worldwide for life sciences and human health research
NGS Nature Sequencing
updated 9 months ago by 40k • written 18 months ago by ▴ 350
1
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0
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316
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News: Reproducibility in Bioinformatics Workshop
Reproducibility
updated 9 months ago by 40k • written 18 months ago by ★ 2.3k
0
votes
0
replies
336
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News: Cellosaurus release 41 is available
knowledgebase biocuration cell-line
updated 7 months ago by 40k • written 18 months ago by ▴ 110
1
vote
0
replies
516
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News: :: LAST CALL :: Bioinformatics Pipeline Development with Nextflow (April 4-7, 2022)
NGS Pipeline-Development Nextflow
updated 9 months ago by 40k • written 18 months ago by 10k
0
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0
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468
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News: Cellosaurus release 40 is available
knowledgebase cell-line
updated 7 months ago by 40k • written 21 months ago by ▴ 110
0
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0
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367
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News: Bioinformatics Analysis
Transcriptome genome data-analysis
updated 7 months ago by 40k • written 22 months ago by • 0
0
votes
0
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413
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News: Bioinformatics
metagenomics metatranscriptomics
updated 7 months ago by 40k • written 22 months ago by • 0
0
votes
0
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404
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News: UC Davis Bioinformatics Core Workshops
data-analysis
updated 7 months ago by 40k • written 22 months ago by • 0
0
votes
0
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532
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News: Metagenomics and Metatranscriptomics Workshop!
metagenomics metatranscriptomics
updated 7 months ago by 40k • written 22 months ago by • 0
0
votes
0
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745
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News: UC Davis Bioinformatics Core Workshops
Workshops UC-Davis
updated 7 months ago by 40k • written 22 months ago by • 0
1
vote
1
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563
views
News: QC for Next Generation Sequencing
NGS QC
updated 6 months ago by 40k • written 23 months ago by • 0
0
votes
0
replies
552
views
News: Cellosaurus release 39 is available
knowledgebase cell-line
updated 7 months ago by 40k • written 2.0 years ago by ▴ 110
0
votes
0
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653
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News: FINAL CALL :: Online Course - A Practical Introduction to NGS Data Analysis (July 14-16, 2021)
NGS workshop
updated 6 months ago by 40k • written 2.2 years ago by 10k
1,000 results • Page 4 of 20
Recent Votes
Comment: Quantification after transcriptome assembly with Trinity
Snakemake: output folder a as dependency to a different rule
A: Snakemake: output folder a as dependency to a different rule
A: In Seurat, How Do nCount_RNA Differ from nFeature_RNA?
How to identify 16s sequences from binning data(contigs)?
geom_signif() uses t-test to compare between more than 3 groups... Isn't this wrong?
Answer: Filter transcription factors
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Recent Replies
Answer: Gene enrichment analysis of prokaryotes gene by dthorbur ▴ 550
[Here](https://github.com/golden75/prokaryote_RNASeq) is a tutorial on how to use the R package DESeq2 for prokaryotic RNAseq analyses. …
Comment: Read block operation failed with BAM file by John Marshall 3.0k
Indeed, though it is a seek issue when accessing files over HTTP and other network protocols. So, unless there's something you didn't menti…
Comment: geom_signif() uses t-test to compare between more than 3 groups... Isn't this wr by RM123 ▴ 10
Thank you for your help. I am comparing 4 groups, but as I have gene expression data I have a considerable number of boxplots to make. I fo…
Comment: gene correlations in between two groups by ATpoint 76k
And how should I know this? I cannot read minds, nor see your screen, data or anything. Please ask a good question with necessary details. …
Comment: gene correlations in between two groups by edus_bioinfo ▴ 40
Thanks. But they are already analyzed. Afaik it analyzes raw data. In my dataset for each gene there is score. I want to interpret the data…
Answer: GWAS phenotype by dthorbur ▴ 550
Hello again. Yes, you can conduct GWAS using binary trait data, but it comes with a whole suite of complications. See [this](https://ww…
Comment: geom_signif() uses t-test to compare between more than 3 groups... Isn't this wr by RM123 ▴ 10
Hello Dariober, That seems like a good solution, however I'm pretty new to R. Could you tell me how I can do that?
Comment: how to create a loop in R by Nicolas Rosewick 10k
Not really a bioinformatics related question. Start by looking at R tutorial, there is plenty of them online e.g. : https://www.statmethods…
Comment: Violin plot (Monocle 3) - Troubleshooting by fracarb8 ★ 1.2k
You did not add the screenshot.
Answer: BED files by Alex Reynolds 35k
Generically via `bedmap`: ``` bedmap --echo --echo-map --count exome.bed annotations.bed > answer.bed ``` The `annotations.bed` fil…
Comment: geom_signif() uses t-test to compare between more than 3 groups... Isn't this wr by dariober 14k
It seems to me that anova followed by HSD is a more sensible approach than applying independent t-tests. Granted this is the first time I s…
Comment: BED files by barslmn ★ 1.8k
I am guessing you want the annotation files. https://ftp.ncbi.nlm.nih.gov/refseq/H_sapiens/annotation/GRCh38_latest/refseq_identifiers/
Comment: Filter human transcription factors by Alex Reynolds 35k
Curious how redundant these TFs are. Jeff Vierstra has done some analysis on this to simplify model sets: https://www.vierstra.org/resource…
Comment: Read block operation failed with BAM file by Alex Reynolds 35k
https://github.com/samtools/htslib/pull/1676 patches a seek issue in `htslib` (upon which `samtools` and `pysam` depend)
Comment: Merging the filename with tsv files for master file by barslmn ★ 1.8k
Could you add samples from your files and your expected output.
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